Wall clock time and date at job start Tue Mar 31 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47499 * 300.00270 * 3 2 1 6 6 H 1.48504 * 109.47039 * 60.00712 * 3 2 1 7 7 C 1.38657 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00187 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99453 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99646 * 174.96294 * 9 7 2 11 11 C 1.38957 * 120.03323 * 5.37162 * 10 9 7 12 12 C 1.38119 * 120.06627 * 179.97438 * 11 10 9 13 13 C 1.38201 * 120.13878 * 359.78329 * 12 11 10 14 14 C 1.38912 * 120.06748 * 0.46906 * 13 12 11 15 15 N 1.39948 * 120.03215 * 179.78997 * 14 13 12 16 16 C 1.34783 * 119.99865 * 214.84673 * 15 14 13 17 17 O 1.21589 * 119.99895 * 355.49054 * 16 15 14 18 18 N 1.34770 * 120.00191 * 175.49239 * 16 15 14 19 19 C 1.46501 * 120.00130 * 179.72488 * 18 16 15 20 20 C 1.53000 * 109.47317 * 180.27710 * 19 18 16 21 21 N 1.46901 * 109.47105 * 179.97438 * 20 19 18 22 22 C 1.47849 * 111.00056 * 290.84074 * 21 20 19 23 23 C 1.54898 * 104.79393 * 213.63898 * 22 21 20 24 24 C 1.55135 * 101.65754 * 37.06867 * 23 22 21 25 25 H 1.09010 * 110.70586 * 82.73131 * 24 23 22 26 26 O 1.42898 * 110.71048 * 205.96234 * 24 23 22 27 27 C 1.47448 * 110.99827 * 169.99889 * 21 20 19 28 28 C 1.38730 * 120.03368 * 185.34079 * 10 9 7 29 29 H 0.97001 * 120.00115 * 359.97438 * 1 2 3 30 30 H 1.07994 * 119.96024 * 359.97089 * 11 10 9 31 31 H 1.08005 * 119.92998 * 180.02562 * 12 11 10 32 32 H 1.08000 * 119.96616 * 180.23342 * 13 12 11 33 33 H 0.96995 * 120.00722 * 34.85068 * 15 14 13 34 34 H 0.97003 * 120.00169 * 0.02562 * 18 16 15 35 35 H 1.09004 * 109.46908 * 300.27426 * 19 18 16 36 36 H 1.08996 * 109.47470 * 60.27344 * 19 18 16 37 37 H 1.08996 * 109.47059 * 300.00003 * 20 19 18 38 38 H 1.09004 * 109.47005 * 59.99713 * 20 19 18 39 39 H 1.09004 * 110.37290 * 332.46557 * 22 21 20 40 40 H 1.08997 * 110.37256 * 94.80648 * 22 21 20 41 41 H 1.09000 * 110.99133 * 278.97161 * 23 22 21 42 42 H 1.09010 * 111.02249 * 155.17557 * 23 22 21 43 43 H 0.96700 * 113.99870 * 293.60342 * 26 24 23 44 44 H 1.09000 * 109.88591 * 242.66144 * 27 21 20 45 45 H 1.09000 * 109.88680 * 3.84982 * 27 21 20 46 46 H 1.07998 * 120.06899 * 0.02562 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1073 11 6 3.4578 -3.4382 -0.0978 12 6 4.2066 -4.5938 -0.2058 13 6 3.5785 -5.8196 -0.3191 14 6 2.1913 -5.8920 -0.3345 15 7 1.5560 -7.1333 -0.4538 16 6 0.4007 -7.2358 -1.1403 17 8 -0.1322 -6.2380 -1.5861 18 7 -0.1638 -8.4444 -1.3328 19 6 -1.4227 -8.5552 -2.0739 20 6 -1.8466 -10.0237 -2.1424 21 7 -3.1093 -10.1347 -2.8850 22 6 -4.2288 -9.5490 -2.1172 23 6 -5.4569 -10.4196 -2.4821 24 6 -4.8217 -11.8314 -2.5819 25 1 -4.7326 -12.2847 -1.5945 26 8 -5.5827 -12.6673 -3.4561 27 6 -3.4277 -11.5442 -3.1782 28 6 1.4364 -4.7331 -0.2253 29 1 -0.4850 0.8400 0.0004 30 1 3.9514 -2.4821 -0.0059 31 1 5.2853 -4.5398 -0.1977 32 1 4.1667 -6.7218 -0.3996 33 1 1.9470 -7.9198 -0.0423 34 1 0.2611 -9.2404 -0.9768 35 1 -2.1952 -7.9774 -1.5663 36 1 -1.2850 -8.1692 -3.0839 37 1 -1.0742 -10.6015 -2.6499 38 1 -1.9844 -10.4096 -1.1324 39 1 -4.0268 -9.6071 -1.0476 40 1 -4.3944 -8.5143 -2.4173 41 1 -5.8819 -10.1142 -3.4382 42 1 -6.2091 -10.3847 -1.6939 43 1 -6.4674 -12.8779 -3.1275 44 1 -3.4455 -11.7038 -4.2563 45 1 -2.6855 -12.1957 -2.7168 46 1 0.3578 -4.7873 -0.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860462211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:50 Heat of formation + Delta-G solvation = -91.816778 kcal Electronic energy + Delta-G solvation = -27598.226972 eV Core-core repulsion = 23487.791764 eV Total energy + Delta-G solvation = -4110.435208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71104 -40.54685 -40.24599 -38.38813 -37.32448 -35.88504 -35.53600 -34.24649 -32.52800 -31.11672 -30.27843 -29.63571 -28.05785 -27.28500 -24.46610 -23.58352 -23.03706 -22.17980 -22.05983 -21.64663 -19.97036 -19.67484 -18.88053 -18.62227 -17.51120 -17.09011 -16.90230 -16.70349 -16.23088 -16.13678 -15.96975 -15.81186 -15.49267 -15.30417 -15.24770 -14.96663 -14.63739 -14.26968 -14.19029 -13.99200 -13.68677 -13.57141 -13.16967 -12.93516 -12.73874 -12.71736 -12.65583 -12.41395 -12.35065 -12.12690 -12.07625 -11.73659 -11.58303 -11.30877 -10.94805 -10.93359 -10.76579 -10.23111 -9.41106 -9.28510 -8.83170 -8.45243 -6.14774 0.49346 0.73660 1.34696 1.44137 1.46259 1.55022 2.03879 2.19219 2.74006 2.85590 3.20110 3.20328 3.25846 3.60305 3.64672 3.70752 3.85980 4.00547 4.10337 4.17898 4.27237 4.39360 4.42675 4.45681 4.51023 4.54832 4.71810 4.77816 4.79108 4.85614 4.85896 4.92110 5.03167 5.07645 5.13384 5.13735 5.32745 5.41701 5.49951 5.66722 5.77222 5.84999 5.94725 5.99071 6.05739 6.24586 6.83609 6.98340 7.00433 7.48773 7.82374 8.79017 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.001926 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.370407 B =14533.820617 C =16020.487306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.030 4.030 3 Si 1.025 2.975 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.237 6.237 10 C 0.125 3.875 11 C -0.256 4.256 12 C -0.048 4.048 13 C -0.203 4.203 14 C 0.201 3.799 15 N -0.663 5.663 16 C 0.693 3.307 17 O -0.619 6.619 18 N -0.719 5.719 19 C 0.145 3.855 20 C 0.053 3.947 21 N -0.540 5.540 22 C 0.035 3.965 23 C -0.158 4.158 24 C 0.086 3.914 25 H 0.082 0.918 26 O -0.577 6.577 27 C 0.049 3.951 28 C -0.214 4.214 29 H 0.272 0.728 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.429 0.571 34 H 0.418 0.582 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.398 0.602 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -28.888 -1.065 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.227 4.227 3 Si 0.844 3.156 4 H -0.169 1.169 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.144 6.144 10 C 0.074 3.926 11 C -0.276 4.276 12 C -0.067 4.067 13 C -0.224 4.224 14 C 0.105 3.895 15 N -0.313 5.313 16 C 0.393 3.607 17 O -0.498 6.498 18 N -0.377 5.377 19 C 0.020 3.980 20 C -0.076 4.076 21 N -0.266 5.266 22 C -0.092 4.092 23 C -0.196 4.196 24 C 0.026 3.974 25 H 0.100 0.900 26 O -0.385 6.385 27 C -0.079 4.079 28 C -0.236 4.236 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.268 0.732 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.248 0.752 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.426 -27.619 -2.302 27.820 hybrid contribution -0.611 0.199 1.290 1.441 sum -3.037 -27.420 -1.012 27.606 Atomic orbital electron populations 1.70237 1.08303 1.28669 1.49204 1.26743 0.96902 1.03095 0.95939 0.84450 0.78378 0.74359 0.78447 1.16900 1.19597 1.19235 1.21965 0.92712 0.81266 1.52875 0.87539 1.83962 1.36279 1.12735 1.81407 1.19695 0.91782 0.87377 0.93740 1.21325 0.92400 1.00819 1.13041 1.21034 1.00572 0.90339 0.94710 1.20868 0.90775 0.99513 1.11208 1.17086 0.91480 0.83307 0.97610 1.42180 1.23764 1.09716 1.55627 1.16208 0.80946 0.84293 0.79212 1.91031 1.64689 1.37536 1.56555 1.44657 1.26244 1.06629 1.60135 1.21021 0.83820 0.97533 0.95654 1.22383 0.92718 0.94201 0.98259 1.63372 1.02590 1.16027 1.44592 1.23080 0.90079 0.99409 0.96651 1.23397 0.97770 0.95283 1.03150 1.23037 0.91567 0.89611 0.93206 0.89983 1.86461 1.32520 1.70327 1.49233 1.22717 0.95282 0.87688 1.02164 1.20204 0.99631 0.90752 1.13021 0.91949 0.85930 0.82133 0.81668 0.73155 0.74443 0.93318 0.92829 0.88151 0.91802 0.92110 0.91050 0.90815 0.88720 0.75189 0.90611 0.90138 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.32 13.67 21.61 0.30 -60.03 16 2 C -0.03 -1.81 5.49 84.83 0.47 -1.34 16 3 Si 1.03 44.73 29.55 68.60 2.03 46.76 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.41 -25.31 9.49 67.92 0.64 -24.67 16 8 H 0.11 5.90 5.20 -2.91 -0.02 5.88 16 9 O -0.24 -15.52 9.76 -22.81 -0.22 -15.74 16 10 C 0.12 6.80 6.64 22.56 0.15 6.95 16 11 C -0.26 -11.46 9.17 22.41 0.21 -11.25 16 12 C -0.05 -1.59 10.03 22.23 0.22 -1.36 16 13 C -0.20 -6.03 9.96 22.42 0.22 -5.81 16 14 C 0.20 7.34 6.30 38.13 0.24 7.58 16 15 N -0.66 -17.91 5.34 -317.23 -1.70 -19.60 16 16 C 0.69 21.99 8.41 179.05 1.51 23.49 16 17 O -0.62 -28.35 13.78 -4.00 -0.06 -28.40 16 18 N -0.72 -14.33 5.56 -478.53 -2.66 -16.99 16 19 C 0.14 3.04 5.72 86.38 0.49 3.54 16 20 C 0.05 0.67 4.68 86.30 0.40 1.08 16 21 N -0.54 -8.46 5.16 -885.54 -4.57 -13.03 16 22 C 0.04 0.53 5.78 86.77 0.50 1.03 16 23 C -0.16 -1.83 6.80 31.97 0.22 -1.61 16 24 C 0.09 0.91 4.32 31.77 0.14 1.05 16 25 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 26 O -0.58 -6.85 13.39 -148.98 -1.99 -8.84 16 27 C 0.05 0.64 6.64 86.64 0.58 1.21 16 28 C -0.21 -10.67 8.64 22.51 0.19 -10.47 16 29 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 30 H 0.12 5.49 5.63 -2.91 -0.02 5.48 16 31 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.43 6.65 8.84 -92.71 -0.82 5.83 16 34 H 0.42 4.25 8.49 -92.71 -0.79 3.46 16 35 H 0.05 1.23 7.49 -2.38 -0.02 1.21 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.10 0.97 8.03 -2.39 -0.02 0.95 16 38 H 0.06 0.59 7.85 -2.38 -0.02 0.57 16 39 H 0.06 0.80 7.62 -2.38 -0.02 0.78 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.40 1.31 9.12 -74.06 -0.68 0.63 16 44 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 45 H 0.08 0.75 7.55 -2.39 -0.02 0.73 16 46 H 0.10 5.59 6.23 -2.91 -0.02 5.57 16 Total: -1.00 -93.03 380.83 -3.93 -96.96 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -1.24 Total: 29.50 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 6.18 Total: -10.59 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -8.63 Total: -109.64 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -2.27 Total: -52.99 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -93.03 -3.93 -96.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860462211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.146 kcal (2) G-P(sol) polarization free energy of solvation -93.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds