Wall clock time and date at job start Tue Mar 31 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48504 * 109.46952 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47529 * 119.99869 * 3 2 1 7 7 C 1.38654 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00229 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99867 * 185.04415 * 9 7 2 11 11 C 1.38878 * 120.06926 * 354.17477 * 10 9 7 12 12 C 1.38100 * 119.93217 * 180.25352 * 11 10 9 13 13 C 1.38299 * 120.06758 * 0.04254 * 12 11 10 14 14 C 1.50702 * 119.93125 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47029 * 269.98253 * 14 13 12 16 16 C 1.34776 * 119.99995 * 179.97438 * 15 14 13 17 17 O 1.21592 * 119.99772 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00373 * 179.97438 * 16 15 14 19 19 C 1.46492 * 119.99998 * 179.97438 * 18 16 15 20 20 C 1.53010 * 109.47007 * 180.02562 * 19 18 16 21 21 H 1.08997 * 109.50506 * 64.91139 * 20 19 18 22 22 C 1.53096 * 109.50541 * 185.00182 * 20 19 18 23 23 O 1.43018 * 109.25818 * 176.77991 * 22 20 19 24 24 C 1.43017 * 113.73945 * 301.32933 * 23 22 20 25 25 C 1.53102 * 109.25621 * 58.66838 * 24 23 22 26 26 N 1.47013 * 109.26022 * 303.15102 * 25 24 23 27 27 C 1.38311 * 120.13959 * 359.96269 * 13 12 11 28 28 C 1.38096 * 120.06782 * 0.02562 * 27 13 12 29 29 H 0.97002 * 120.00599 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.03391 * 0.26049 * 11 10 9 31 31 H 1.08001 * 119.96661 * 180.02562 * 12 11 10 32 32 H 1.08992 * 109.46957 * 29.98274 * 14 13 12 33 33 H 1.08999 * 109.46847 * 149.98663 * 14 13 12 34 34 H 0.97004 * 120.00501 * 0.02562 * 15 14 13 35 35 H 0.96997 * 119.99735 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.47557 * 300.00271 * 19 18 16 37 37 H 1.09002 * 109.47173 * 60.00426 * 19 18 16 38 38 H 1.08997 * 109.51023 * 296.71626 * 22 20 19 39 39 H 1.09002 * 109.50505 * 56.84646 * 22 20 19 40 40 H 1.08999 * 109.51075 * 178.59952 * 24 23 22 41 41 H 1.08999 * 109.50652 * 298.69507 * 24 23 22 42 42 H 1.08998 * 109.50880 * 63.08359 * 25 24 23 43 43 H 1.09006 * 109.50697 * 183.21665 * 25 24 23 44 44 H 1.00900 * 111.00072 * 294.84527 * 26 25 24 45 45 H 1.08001 * 119.96634 * 180.02562 * 27 13 12 46 46 H 1.07991 * 120.03444 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0016 10 6 2.0699 -3.5046 0.1084 11 6 3.4571 -3.4401 0.0886 12 6 4.2023 -4.5981 0.1922 13 6 3.5686 -5.8213 0.3147 14 6 4.3848 -7.0831 0.4270 15 7 4.6357 -7.6231 -0.9115 16 6 5.3514 -8.7557 -1.0580 17 8 5.7893 -9.3290 -0.0792 18 7 5.5819 -9.2528 -2.2894 19 6 6.3603 -10.4836 -2.4486 20 6 6.4740 -10.8264 -3.9354 21 1 7.0487 -10.0526 -4.4444 22 6 7.1788 -12.1759 -4.0964 23 8 7.2154 -12.5266 -5.4825 24 6 5.9229 -12.6157 -6.0882 25 6 5.2054 -11.2706 -5.9473 26 7 5.1295 -10.9081 -4.5246 27 6 2.1873 -5.8889 0.3347 28 6 1.4365 -4.7344 0.2317 29 1 -0.4851 0.8400 0.0004 30 1 3.9525 -2.4852 -0.0077 31 1 5.2811 -4.5486 0.1772 32 1 5.3347 -6.8594 0.9124 33 1 3.8385 -7.8177 1.0186 34 1 4.2874 -7.1651 -1.6925 35 1 5.2329 -8.7953 -3.0702 36 1 7.3571 -10.3395 -2.0320 37 1 5.8618 -11.2991 -1.9245 38 1 8.1962 -12.1034 -3.7123 39 1 6.6334 -12.9397 -3.5420 40 1 6.0320 -12.8611 -7.1446 41 1 5.3413 -13.3928 -5.5922 42 1 5.7594 -10.5040 -6.4891 43 1 4.1983 -11.3506 -6.3567 44 1 4.5508 -11.5596 -4.0158 45 1 1.6953 -6.8455 0.4309 46 1 0.3581 -4.7877 0.2478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861572108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:59 Heat of formation + Delta-G solvation = -73.169550 kcal Electronic energy + Delta-G solvation = -27415.221357 eV Core-core repulsion = 23305.594753 eV Total energy + Delta-G solvation = -4109.626604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41689 -39.71180 -39.04006 -36.94083 -35.99572 -34.32401 -34.10963 -32.39299 -31.99367 -30.27059 -29.78509 -27.45382 -26.21939 -25.57196 -24.44455 -22.98623 -22.03900 -21.56107 -20.82253 -20.59547 -18.46043 -18.05244 -17.18453 -16.90269 -16.71024 -16.18157 -16.08129 -15.75412 -15.25950 -15.20073 -14.75412 -14.63447 -14.41716 -14.13493 -13.83477 -13.64627 -13.54370 -13.37154 -12.98960 -12.83315 -12.76915 -12.52864 -12.05584 -11.86291 -11.76242 -11.66774 -11.58124 -11.37896 -10.94059 -10.77593 -10.73551 -10.68881 -10.49500 -10.16940 -9.42301 -9.27313 -8.90357 -8.84739 -8.70011 -8.27044 -7.31910 -6.52157 -4.11146 2.04382 2.14446 2.82675 3.09364 3.10824 3.13361 3.25984 3.28816 3.53825 3.91084 4.09912 4.31754 4.39158 4.42482 4.53099 4.59148 4.66877 4.80240 4.99209 5.02369 5.06698 5.17325 5.18010 5.26120 5.33283 5.42496 5.46670 5.51073 5.68760 5.84089 5.95947 6.13415 6.23160 6.36824 6.40964 6.51087 6.60287 6.65033 6.71210 6.81809 6.93617 7.03584 7.17557 7.29372 7.36202 7.72863 7.92418 8.11367 8.67842 8.93067 9.61338 10.65282 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.001736 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.374542 B =16120.864452 C =16664.846961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.213 4.213 14 C 0.198 3.802 15 N -0.737 5.737 16 C 0.700 3.300 17 O -0.602 6.602 18 N -0.740 5.740 19 C 0.150 3.850 20 C 0.039 3.961 21 H 0.099 0.901 22 C 0.030 3.970 23 O -0.378 6.378 24 C 0.018 3.982 25 C 0.022 3.978 26 N -0.677 5.677 27 C -0.053 4.053 28 C -0.196 4.196 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.344 0.656 45 H 0.112 0.888 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -21.588 -10.326 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.075 3.925 15 N -0.392 5.392 16 C 0.400 3.600 17 O -0.481 6.481 18 N -0.397 5.397 19 C 0.025 3.975 20 C -0.072 4.072 21 H 0.117 0.883 22 C -0.049 4.049 23 O -0.296 6.296 24 C -0.060 4.060 25 C -0.108 4.108 26 N -0.307 5.307 27 C -0.072 4.072 28 C -0.215 4.215 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.239 0.761 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.122 0.878 39 H 0.074 0.926 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.163 0.837 45 H 0.130 0.870 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.186 -21.222 -9.640 25.854 hybrid contribution 0.118 0.371 -0.582 0.700 sum 11.304 -20.851 -10.222 25.827 Atomic orbital electron populations 1.70024 1.05996 1.27960 1.45419 1.25313 0.95862 0.98922 0.96364 0.85765 0.78719 0.79630 0.79251 1.19452 1.20223 1.19424 1.21306 0.91834 0.80741 1.53086 0.88980 1.83979 1.34490 1.11555 1.77603 1.19441 0.90323 0.88049 0.91620 1.21160 0.93776 0.98953 1.11791 1.20650 0.98395 0.91670 0.96186 1.19232 0.93560 0.93532 1.15148 1.19811 0.98321 0.92173 0.82154 1.45480 1.57390 1.26010 1.10318 1.16029 0.79425 0.81102 0.83434 1.90904 1.57195 1.62017 1.38021 1.44888 1.59302 1.28220 1.07256 1.21008 0.96508 0.86846 0.93188 1.22519 0.90906 0.98139 0.95633 0.88258 1.23191 1.03058 0.95509 0.83131 1.88099 1.27924 1.90237 1.23342 1.23335 0.85413 0.97652 0.99597 1.22686 1.01870 0.96230 0.90016 1.60827 1.11612 1.55359 1.02898 1.20540 0.92786 0.96804 0.97105 1.20213 0.99663 0.90280 1.11346 0.91842 0.85451 0.87388 0.91837 0.91800 0.76847 0.76116 0.90875 0.91772 0.87759 0.92601 0.88184 0.93040 0.89650 0.89220 0.83707 0.86951 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.17 -4.81 9.76 0.03 0.00 -4.81 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.24 -4.91 9.17 -39.39 -0.36 -5.28 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.42 5.25 -104.57 -0.55 -3.97 16 14 C 0.20 2.82 5.80 -5.19 -0.03 2.79 16 15 N -0.74 -9.34 5.55 -66.42 -0.37 -9.70 16 16 C 0.70 9.37 8.57 -86.92 -0.74 8.63 16 17 O -0.60 -10.36 16.34 5.28 0.09 -10.27 16 18 N -0.74 -7.10 5.39 -65.22 -0.35 -7.45 16 19 C 0.15 1.19 5.30 -4.04 -0.02 1.17 16 20 C 0.04 0.23 2.79 -67.59 -0.19 0.05 16 21 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 22 C 0.03 0.18 6.29 37.21 0.23 0.41 16 23 O -0.38 -2.89 10.83 -35.23 -0.38 -3.27 16 24 C 0.02 0.10 7.01 37.21 0.26 0.36 16 25 C 0.02 0.11 6.76 -3.71 -0.03 0.08 16 26 N -0.68 -3.94 6.04 -106.44 -0.64 -4.58 16 27 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 28 C -0.20 -3.94 9.99 -39.39 -0.39 -4.33 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.40 4.48 8.48 -40.82 -0.35 4.14 16 35 H 0.40 3.33 8.16 -40.82 -0.33 3.00 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.34 1.90 8.79 -39.29 -0.35 1.55 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -32.55 384.59 -9.42 -41.96 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.64 Total: 9.83 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.65 Total: -8.59 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.60 Total: -45.65 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.29 Total: -18.36 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.55 -9.42 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861572108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.206 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds