Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86794 * 120.00097 * 2 1 4 4 H 1.48504 * 109.46952 * 239.99955 * 3 2 1 5 5 H 1.48502 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47529 * 119.99869 * 3 2 1 7 7 C 1.38654 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00229 * 180.02562 * 7 2 1 9 9 O 1.34835 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99867 * 185.04415 * 9 7 2 11 11 C 1.38878 * 120.06926 * 354.17477 * 10 9 7 12 12 C 1.38100 * 119.93217 * 180.25352 * 11 10 9 13 13 C 1.38299 * 120.06758 * 0.04254 * 12 11 10 14 14 C 1.50702 * 119.93125 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.47029 * 269.98253 * 14 13 12 16 16 C 1.34776 * 119.99995 * 179.97438 * 15 14 13 17 17 O 1.21592 * 119.99772 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00373 * 179.97438 * 16 15 14 19 19 C 1.46492 * 119.99998 * 179.97438 * 18 16 15 20 20 C 1.53010 * 109.47007 * 180.02562 * 19 18 16 21 21 H 1.08997 * 109.50506 * 64.91139 * 20 19 18 22 22 C 1.53096 * 109.50541 * 185.00182 * 20 19 18 23 23 O 1.43018 * 109.25818 * 176.77991 * 22 20 19 24 24 C 1.43017 * 113.73945 * 301.32933 * 23 22 20 25 25 C 1.53102 * 109.25621 * 58.66838 * 24 23 22 26 26 N 1.47013 * 109.26022 * 303.15102 * 25 24 23 27 27 C 1.38311 * 120.13959 * 359.96269 * 13 12 11 28 28 C 1.38096 * 120.06782 * 0.02562 * 27 13 12 29 29 H 0.97002 * 120.00599 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.03391 * 0.26049 * 11 10 9 31 31 H 1.08001 * 119.96661 * 180.02562 * 12 11 10 32 32 H 1.08992 * 109.46957 * 29.98274 * 14 13 12 33 33 H 1.08999 * 109.46847 * 149.98663 * 14 13 12 34 34 H 0.97004 * 120.00501 * 0.02562 * 15 14 13 35 35 H 0.96997 * 119.99735 * 0.02562 * 18 16 15 36 36 H 1.08997 * 109.47557 * 300.00271 * 19 18 16 37 37 H 1.09002 * 109.47173 * 60.00426 * 19 18 16 38 38 H 1.08997 * 109.51023 * 296.71626 * 22 20 19 39 39 H 1.09002 * 109.50505 * 56.84646 * 22 20 19 40 40 H 1.08999 * 109.51075 * 178.59952 * 24 23 22 41 41 H 1.08999 * 109.50652 * 298.69507 * 24 23 22 42 42 H 1.08998 * 109.50880 * 63.08359 * 25 24 23 43 43 H 1.09006 * 109.50697 * 183.21665 * 25 24 23 44 44 H 1.00900 * 111.00072 * 294.84527 * 26 25 24 45 45 H 1.08001 * 119.96634 * 180.02562 * 27 13 12 46 46 H 1.07991 * 120.03444 * 180.02562 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1033 1.6964 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3685 0.0016 10 6 2.0699 -3.5046 0.1084 11 6 3.4571 -3.4401 0.0886 12 6 4.2023 -4.5981 0.1922 13 6 3.5686 -5.8213 0.3147 14 6 4.3848 -7.0831 0.4270 15 7 4.6357 -7.6231 -0.9115 16 6 5.3514 -8.7557 -1.0580 17 8 5.7893 -9.3290 -0.0792 18 7 5.5819 -9.2528 -2.2894 19 6 6.3603 -10.4836 -2.4486 20 6 6.4740 -10.8264 -3.9354 21 1 7.0487 -10.0526 -4.4444 22 6 7.1788 -12.1759 -4.0964 23 8 7.2154 -12.5266 -5.4825 24 6 5.9229 -12.6157 -6.0882 25 6 5.2054 -11.2706 -5.9473 26 7 5.1295 -10.9081 -4.5246 27 6 2.1873 -5.8889 0.3347 28 6 1.4365 -4.7344 0.2317 29 1 -0.4851 0.8400 0.0004 30 1 3.9525 -2.4852 -0.0077 31 1 5.2811 -4.5486 0.1772 32 1 5.3347 -6.8594 0.9124 33 1 3.8385 -7.8177 1.0186 34 1 4.2874 -7.1651 -1.6925 35 1 5.2329 -8.7953 -3.0702 36 1 7.3571 -10.3395 -2.0320 37 1 5.8618 -11.2991 -1.9245 38 1 8.1962 -12.1034 -3.7123 39 1 6.6334 -12.9397 -3.5420 40 1 6.0320 -12.8611 -7.1446 41 1 5.3413 -13.3928 -5.5922 42 1 5.7594 -10.5040 -6.4891 43 1 4.1983 -11.3506 -6.3567 44 1 4.5508 -11.5596 -4.0158 45 1 1.6953 -6.8455 0.4309 46 1 0.3581 -4.7877 0.2478 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861572108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = -99.076873 kcal Electronic energy + Delta-G solvation = -27416.344783 eV Core-core repulsion = 23305.594753 eV Total energy + Delta-G solvation = -4110.750030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21119 -40.79018 -40.37027 -38.52695 -36.72320 -35.54872 -34.79465 -34.25705 -32.67353 -31.81738 -31.14084 -28.14783 -27.55117 -26.69833 -25.64691 -23.62782 -23.53419 -22.16121 -22.07093 -21.76406 -19.87387 -19.42940 -18.81071 -17.77564 -17.21586 -16.89988 -16.81686 -16.46012 -16.40560 -16.24122 -15.99405 -15.85801 -15.70367 -15.53317 -15.22298 -14.89620 -14.74448 -14.36136 -14.31642 -14.01787 -13.65089 -13.44608 -13.31566 -13.07764 -12.99944 -12.51621 -12.36552 -12.32158 -12.24184 -12.21026 -12.12486 -12.08847 -11.35694 -11.19134 -11.17849 -10.78914 -10.30121 -9.80091 -9.65852 -9.29603 -9.00146 -8.47201 -6.15442 0.54946 0.59574 1.36406 1.45941 1.52186 1.86612 2.18064 2.24061 2.79025 2.84327 3.04883 3.15977 3.46834 3.51057 3.76973 3.82631 3.91760 3.96569 4.05703 4.13897 4.19373 4.20095 4.38531 4.47324 4.50134 4.58810 4.65562 4.70553 4.78701 4.80270 4.83060 4.92995 5.03892 5.06252 5.15636 5.28608 5.50973 5.54419 5.57620 5.70558 5.77856 5.83049 6.02406 6.06035 6.11352 6.18530 6.28185 6.97486 7.17561 7.66169 7.76879 8.75317 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.001736 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.374542 B =16120.864452 C =16664.846961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.180 4.180 14 C 0.205 3.795 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.640 6.640 18 N -0.724 5.724 19 C 0.152 3.848 20 C 0.052 3.948 21 H 0.095 0.905 22 C 0.030 3.970 23 O -0.400 6.400 24 C 0.016 3.984 25 C 0.025 3.975 26 N -0.682 5.682 27 C -0.043 4.043 28 C -0.205 4.205 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.139 0.861 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.407 0.593 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.347 0.653 45 H 0.147 0.853 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 -23.449 -10.947 29.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.081 3.919 15 N -0.387 5.387 16 C 0.399 3.601 17 O -0.522 6.522 18 N -0.381 5.381 19 C 0.026 3.974 20 C -0.058 4.058 21 H 0.113 0.887 22 C -0.049 4.049 23 O -0.319 6.319 24 C -0.062 4.062 25 C -0.104 4.104 26 N -0.313 5.313 27 C -0.061 4.061 28 C -0.224 4.224 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.156 0.844 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.249 0.751 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.121 0.879 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.222 -23.141 -10.307 28.576 hybrid contribution -0.374 0.531 -0.403 0.764 sum 12.848 -22.610 -10.710 28.125 Atomic orbital electron populations 1.70171 1.07999 1.28902 1.48563 1.26576 0.96833 1.02745 0.95820 0.84663 0.77403 0.74345 0.79933 1.18076 1.19753 1.18263 1.21790 0.92560 0.81353 1.53285 0.87927 1.83948 1.36046 1.12662 1.80881 1.19995 0.91630 0.87953 0.93291 1.21248 0.93016 1.00066 1.12016 1.20942 0.99805 0.90772 0.94849 1.19502 0.93453 0.94066 1.11129 1.19690 0.98088 0.91023 0.83096 1.45222 1.57424 1.26011 1.09998 1.16116 0.79174 0.80922 0.83880 1.90887 1.58731 1.63082 1.39523 1.44796 1.58559 1.28371 1.06346 1.21070 0.95972 0.85917 0.94403 1.22325 0.91160 0.98161 0.94194 0.88688 1.23230 1.03562 0.95398 0.82690 1.88072 1.29373 1.90351 1.24078 1.23456 0.84664 0.97936 1.00145 1.22680 1.02483 0.95863 0.89385 1.60830 1.11358 1.55648 1.03415 1.20881 0.93070 0.96957 0.95190 1.20448 1.00084 0.90419 1.11447 0.91819 0.86188 0.84354 0.91533 0.91261 0.75792 0.75071 0.91174 0.92019 0.87170 0.91991 0.87242 0.92379 0.90330 0.87926 0.83384 0.83513 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.41 -23.49 9.49 67.92 0.64 -22.85 16 8 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 9 O -0.23 -13.41 9.76 -22.81 -0.22 -13.64 16 10 C 0.12 5.82 6.65 22.58 0.15 5.97 16 11 C -0.24 -10.04 9.17 22.39 0.21 -9.84 16 12 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 13 C -0.18 -5.18 5.25 -19.83 -0.10 -5.29 16 14 C 0.20 5.04 5.80 85.63 0.50 5.54 16 15 N -0.73 -15.98 5.55 -482.30 -2.68 -18.66 16 16 C 0.70 16.77 8.57 179.05 1.53 18.30 16 17 O -0.64 -20.55 16.34 -4.01 -0.07 -20.61 16 18 N -0.72 -12.05 5.39 -478.53 -2.58 -14.63 16 19 C 0.15 2.09 5.30 86.38 0.46 2.55 16 20 C 0.05 0.53 2.79 44.93 0.13 0.66 16 21 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 22 C 0.03 0.30 6.29 72.01 0.45 0.76 16 23 O -0.40 -5.49 10.83 -148.98 -1.61 -7.11 16 24 C 0.02 0.14 7.01 72.02 0.50 0.64 16 25 C 0.03 0.20 6.76 86.32 0.58 0.78 16 26 N -0.68 -6.44 6.04 -490.67 -2.96 -9.41 16 27 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 28 C -0.20 -8.21 9.99 22.39 0.22 -7.98 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 31 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 32 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 33 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 34 H 0.41 7.66 8.48 -92.71 -0.79 6.87 16 35 H 0.41 5.62 8.16 -92.71 -0.76 4.86 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.35 3.03 8.79 -89.69 -0.79 2.24 16 45 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 46 H 0.12 4.59 8.06 -2.92 -0.02 4.57 16 Total: -1.00 -74.25 384.59 -2.93 -77.18 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -1.30 Total: 31.89 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 6.17 Total: -13.84 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -7.93 Total: -97.86 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.90 Total: -41.36 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -74.25 -2.93 -77.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861572108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.895 kcal (2) G-P(sol) polarization free energy of solvation -74.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds