Wall clock time and date at job start Tue Mar 31 2020 18:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47406 * 270.00279 * 3 2 1 5 5 H 1.48507 * 109.47136 * 30.00445 * 3 2 1 6 6 H 1.48501 * 109.46955 * 149.99913 * 3 2 1 7 7 C 1.37876 * 119.99443 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99192 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00423 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47222 * 184.06176 * 9 7 2 11 11 C 1.46906 * 111.00486 * 285.60294 * 10 9 7 12 12 N 1.46490 * 109.47456 * 154.99768 * 11 10 9 13 13 C 1.47206 * 125.41808 * 90.00080 * 12 11 10 14 14 C 1.53706 * 103.81115 * 182.14166 * 13 12 11 15 15 H 1.08994 * 111.44167 * 113.94854 * 14 13 12 16 16 C 1.53150 * 110.56551 * 238.37901 * 14 13 12 17 17 C 1.53165 * 108.75341 * 166.60697 * 16 14 13 18 18 C 1.52891 * 110.41421 * 296.88150 * 17 16 14 19 19 C 1.53562 * 109.72533 * 62.28917 * 18 17 16 20 20 N 1.46954 * 107.46735 * 308.36628 * 19 18 17 21 21 C 1.34180 * 125.42102 * 269.97557 * 12 11 10 22 22 O 1.21595 * 123.18025 * 4.29675 * 21 12 11 23 23 C 1.46903 * 111.00230 * 161.64682 * 10 9 7 24 24 C 1.52997 * 109.47293 * 286.20815 * 23 10 9 25 25 F 1.39895 * 109.47346 * 66.51591 * 24 23 10 26 26 F 1.39900 * 109.46859 * 186.51771 * 24 23 10 27 27 F 1.39902 * 109.46683 * 306.51569 * 24 23 10 28 28 H 0.97006 * 119.99877 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47040 * 64.06434 * 9 7 2 30 30 H 1.08998 * 109.47745 * 304.06097 * 9 7 2 31 31 H 1.09010 * 109.46596 * 34.99642 * 11 10 9 32 32 H 1.09001 * 109.46771 * 275.00823 * 11 10 9 33 33 H 1.09003 * 110.55383 * 63.56480 * 13 12 11 34 34 H 1.08993 * 110.68482 * 300.78826 * 13 12 11 35 35 H 1.09007 * 109.59124 * 46.82535 * 16 14 13 36 36 H 1.09000 * 109.58622 * 286.38935 * 16 14 13 37 37 H 1.08995 * 109.31440 * 176.59362 * 17 16 14 38 38 H 1.09000 * 109.15633 * 57.06984 * 17 16 14 39 39 H 1.08997 * 109.42878 * 302.21037 * 18 17 16 40 40 H 1.08998 * 109.42554 * 182.36382 * 18 17 16 41 41 H 1.09004 * 109.87309 * 67.87855 * 19 18 17 42 42 H 1.09002 * 109.87186 * 188.85450 * 19 18 17 43 43 H 1.09002 * 109.46739 * 46.21081 * 23 10 9 44 44 H 1.09005 * 109.47268 * 166.20402 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2025 -3.6140 0.0969 11 6 2.9043 -3.8203 -1.1771 12 7 4.1939 -4.4678 -0.9251 13 6 4.4263 -5.9210 -0.8897 14 6 5.9171 -6.0456 -0.5368 15 1 6.0578 -6.5007 0.4436 16 6 6.6645 -6.8222 -1.6248 17 6 8.1705 -6.6382 -1.4149 18 6 8.5559 -5.1676 -1.5775 19 6 7.8468 -4.3246 -0.5076 20 7 6.4155 -4.6525 -0.5647 21 6 5.3512 -3.8308 -0.6902 22 8 5.4366 -2.6223 -0.5868 23 6 1.5288 -4.8448 0.5321 24 6 1.1957 -4.7444 2.0220 25 9 0.2376 -3.7443 2.2193 26 9 0.6902 -5.9694 2.4703 27 9 2.3548 -4.4278 2.7386 28 1 -0.4850 0.8401 0.0004 29 1 0.6797 -2.5888 -0.9245 30 1 0.5711 -2.5263 0.8510 31 1 3.0695 -2.8575 -1.6609 32 1 2.3000 -4.4540 -1.8262 33 1 4.2255 -6.3645 -1.8650 34 1 3.8108 -6.3908 -0.1227 35 1 6.3828 -6.4395 -2.6059 36 1 6.4126 -7.8805 -1.5569 37 1 8.7123 -7.2360 -2.1477 38 1 8.4350 -6.9713 -0.4113 39 1 8.2581 -4.8221 -2.5675 40 1 9.6350 -5.0612 -1.4666 41 1 8.2435 -4.5672 0.4783 42 1 7.9926 -3.2644 -0.7146 43 1 0.6090 -4.9764 -0.0379 44 1 2.1860 -5.6979 0.3633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872587324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:23 Heat of formation + Delta-G solvation = -149.939166 kcal Electronic energy + Delta-G solvation = -31298.924081 eV Core-core repulsion = 26644.111757 eV Total energy + Delta-G solvation = -4654.812325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.53307 -47.12020 -46.90880 -40.97463 -37.56783 -36.68553 -35.17729 -32.61382 -32.27723 -31.36334 -29.19121 -27.19473 -26.92583 -24.97800 -23.23281 -22.82152 -22.32497 -21.10491 -20.59522 -19.25862 -17.96821 -17.95808 -16.90098 -16.58843 -16.50526 -16.38317 -15.60317 -14.90318 -14.75248 -14.65313 -14.36173 -14.07520 -13.99384 -13.94335 -13.71080 -13.55131 -13.44129 -13.28651 -13.13091 -13.12376 -13.05798 -12.77516 -12.59057 -12.23720 -11.93065 -11.64395 -11.48728 -11.21879 -11.06754 -11.00754 -10.83917 -10.80290 -10.59856 -10.52853 -9.89148 -9.58572 -9.18977 -8.70432 -8.36620 -8.26044 -7.63814 -5.94745 -3.93968 2.59968 3.23797 3.42988 3.47935 3.54020 3.59436 3.90110 4.23984 4.31075 4.40574 4.48512 4.51762 4.59599 4.63012 4.76623 4.87806 5.05993 5.07973 5.12331 5.23192 5.30975 5.35805 5.42109 5.47786 5.55244 5.58393 5.63806 5.67882 5.71425 5.79933 5.84838 6.07984 6.10874 6.34068 6.87161 6.90820 7.07784 7.21810 7.76530 7.86682 7.94765 8.12433 8.45703 9.00632 9.19527 9.70370 11.16066 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.004790 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.922665 B = 5844.652160 C = 7809.009658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.173 3.827 10 N -0.541 5.541 11 C 0.326 3.674 12 N -0.621 5.621 13 C 0.095 3.905 14 C 0.119 3.881 15 H 0.088 0.912 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.137 4.137 19 C 0.157 3.843 20 N -0.642 5.642 21 C 0.706 3.294 22 O -0.559 6.559 23 C 0.009 3.991 24 C 0.456 3.544 25 F -0.170 7.170 26 F -0.198 7.198 27 F -0.174 7.174 28 H 0.260 0.740 29 H -0.004 1.004 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.405 -18.925 -3.452 22.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.196 1.196 7 C -0.542 4.542 8 H 0.092 0.908 9 C 0.049 3.951 10 N -0.268 5.268 11 C 0.116 3.884 12 N -0.361 5.361 13 C -0.030 4.030 14 C 0.014 3.986 15 H 0.106 0.894 16 C -0.164 4.164 17 C -0.155 4.155 18 C -0.176 4.176 19 C 0.035 3.965 20 N -0.383 5.383 21 C 0.408 3.592 22 O -0.433 6.433 23 C -0.122 4.122 24 C 0.401 3.599 25 F -0.151 7.151 26 F -0.180 7.180 27 F -0.155 7.155 28 H 0.069 0.931 29 H 0.014 0.986 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.630 -17.826 -3.017 21.498 hybrid contribution -0.308 0.475 -0.190 0.597 sum 11.322 -17.351 -3.207 20.965 Atomic orbital electron populations 1.69966 1.06002 1.26729 1.51420 1.24926 0.94786 0.99260 0.95411 0.86476 0.80005 0.82881 0.78016 1.20827 1.21488 1.19592 1.21224 0.94256 0.89200 1.49484 0.90772 1.20302 0.90166 0.86686 0.97900 1.61852 1.30725 1.02895 1.31363 1.21623 0.79445 0.98349 0.89000 1.47536 1.08082 1.05226 1.75261 1.22369 0.94842 0.83833 1.01907 1.22098 0.92361 0.84765 0.99370 0.89433 1.22013 0.95535 1.00062 0.98816 1.21434 0.95581 0.96388 1.02048 1.22016 1.00177 0.95452 0.99945 1.21329 0.76686 1.00300 0.98146 1.47830 1.05215 1.05980 1.79307 1.16063 0.80597 0.85012 0.77531 1.90986 1.84614 1.11640 1.56064 1.23196 1.01316 0.97687 0.89973 1.20574 0.74681 0.72856 0.91793 1.93160 1.64917 1.61094 1.95931 1.93122 1.88078 1.45405 1.91389 1.93183 1.49044 1.92669 1.80629 0.93051 0.98620 0.91878 0.86654 0.92965 0.90437 0.90690 0.91129 0.90760 0.91716 0.91788 0.91487 0.90760 0.91736 0.89376 0.90950 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 23.16 29.54 -169.99 -5.02 18.14 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.27 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.50 -14.57 8.45 -34.44 -0.29 -14.86 16 8 H 0.07 2.28 7.78 -52.48 -0.41 1.88 16 9 C 0.17 4.38 4.53 -4.98 -0.02 4.36 16 10 N -0.54 -11.18 4.29 -239.98 -1.03 -12.20 16 11 C 0.33 5.91 5.55 -63.32 -0.35 5.56 16 12 N -0.62 -10.06 3.15 -182.04 -0.57 -10.64 16 13 C 0.09 1.02 6.90 -3.29 -0.02 1.00 16 14 C 0.12 1.20 3.89 -66.67 -0.26 0.94 16 15 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.13 -0.93 5.30 -26.57 -0.14 -1.07 16 17 C -0.12 -0.80 5.78 -26.70 -0.15 -0.96 16 18 C -0.14 -1.12 6.07 -26.50 -0.16 -1.29 16 19 C 0.16 1.77 6.98 -3.50 -0.02 1.75 16 20 N -0.64 -8.92 3.07 -169.56 -0.52 -9.44 16 21 C 0.71 13.20 8.37 -87.21 -0.73 12.47 16 22 O -0.56 -13.52 17.30 5.28 0.09 -13.43 16 23 C 0.01 0.15 4.95 -3.82 -0.02 0.13 16 24 C 0.46 8.22 3.25 37.16 0.12 8.34 16 25 F -0.17 -3.58 14.45 2.25 0.03 -3.54 16 26 F -0.20 -3.11 17.32 2.25 0.04 -3.08 16 27 F -0.17 -3.47 17.12 2.25 0.04 -3.43 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.00 -0.10 8.02 -51.93 -0.42 -0.52 16 30 H 0.06 1.71 4.97 -51.93 -0.26 1.45 16 31 H 0.12 2.49 6.99 -51.92 -0.36 2.13 16 32 H 0.05 0.77 7.92 -51.93 -0.41 0.36 16 33 H 0.08 0.66 7.66 -51.93 -0.40 0.26 16 34 H 0.07 0.73 6.28 -51.93 -0.33 0.41 16 35 H 0.07 0.58 8.02 -51.92 -0.42 0.17 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.13 7.97 -51.93 -0.41 0.72 16 43 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 44 H 0.10 1.28 5.55 -51.93 -0.29 0.99 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -35.43 360.83 -9.13 -44.56 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -6.21 Total: -3.97 kcal Atomic # 6 Polarization: 20.11 SS G_CDS: -2.15 Total: 17.95 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -1.39 Total: -58.64 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 0.11 Total: -10.05 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.43 -9.13 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872587324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.377 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds