Wall clock time and date at job start Tue Mar 31 2020 18:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00038 * 2 1 4 4 H 1.48502 * 109.47406 * 270.00279 * 3 2 1 5 5 H 1.48507 * 109.47136 * 30.00445 * 3 2 1 6 6 H 1.48501 * 109.46955 * 149.99913 * 3 2 1 7 7 C 1.37876 * 119.99443 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99192 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00423 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47222 * 184.06176 * 9 7 2 11 11 C 1.46906 * 111.00486 * 285.60294 * 10 9 7 12 12 N 1.46490 * 109.47456 * 154.99768 * 11 10 9 13 13 C 1.47206 * 125.41808 * 90.00080 * 12 11 10 14 14 C 1.53706 * 103.81115 * 182.14166 * 13 12 11 15 15 H 1.08994 * 111.44167 * 113.94854 * 14 13 12 16 16 C 1.53150 * 110.56551 * 238.37901 * 14 13 12 17 17 C 1.53165 * 108.75341 * 166.60697 * 16 14 13 18 18 C 1.52891 * 110.41421 * 296.88150 * 17 16 14 19 19 C 1.53562 * 109.72533 * 62.28917 * 18 17 16 20 20 N 1.46954 * 107.46735 * 308.36628 * 19 18 17 21 21 C 1.34180 * 125.42102 * 269.97557 * 12 11 10 22 22 O 1.21595 * 123.18025 * 4.29675 * 21 12 11 23 23 C 1.46903 * 111.00230 * 161.64682 * 10 9 7 24 24 C 1.52997 * 109.47293 * 286.20815 * 23 10 9 25 25 F 1.39895 * 109.47346 * 66.51591 * 24 23 10 26 26 F 1.39900 * 109.46859 * 186.51771 * 24 23 10 27 27 F 1.39902 * 109.46683 * 306.51569 * 24 23 10 28 28 H 0.97006 * 119.99877 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47040 * 64.06434 * 9 7 2 30 30 H 1.08998 * 109.47745 * 304.06097 * 9 7 2 31 31 H 1.09010 * 109.46596 * 34.99642 * 11 10 9 32 32 H 1.09001 * 109.46771 * 275.00823 * 11 10 9 33 33 H 1.09003 * 110.55383 * 63.56480 * 13 12 11 34 34 H 1.08993 * 110.68482 * 300.78826 * 13 12 11 35 35 H 1.09007 * 109.59124 * 46.82535 * 16 14 13 36 36 H 1.09000 * 109.58622 * 286.38935 * 16 14 13 37 37 H 1.08995 * 109.31440 * 176.59362 * 17 16 14 38 38 H 1.09000 * 109.15633 * 57.06984 * 17 16 14 39 39 H 1.08997 * 109.42878 * 302.21037 * 18 17 16 40 40 H 1.08998 * 109.42554 * 182.36382 * 18 17 16 41 41 H 1.09004 * 109.87309 * 67.87855 * 19 18 17 42 42 H 1.09002 * 109.87186 * 188.85450 * 19 18 17 43 43 H 1.09002 * 109.46739 * 46.21081 * 23 10 9 44 44 H 1.09005 * 109.47268 * 166.20402 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2025 -3.6140 0.0969 11 6 2.9043 -3.8203 -1.1771 12 7 4.1939 -4.4678 -0.9251 13 6 4.4263 -5.9210 -0.8897 14 6 5.9171 -6.0456 -0.5368 15 1 6.0578 -6.5007 0.4436 16 6 6.6645 -6.8222 -1.6248 17 6 8.1705 -6.6382 -1.4149 18 6 8.5559 -5.1676 -1.5775 19 6 7.8468 -4.3246 -0.5076 20 7 6.4155 -4.6525 -0.5647 21 6 5.3512 -3.8308 -0.6902 22 8 5.4366 -2.6223 -0.5868 23 6 1.5288 -4.8448 0.5321 24 6 1.1957 -4.7444 2.0220 25 9 0.2376 -3.7443 2.2193 26 9 0.6902 -5.9694 2.4703 27 9 2.3548 -4.4278 2.7386 28 1 -0.4850 0.8401 0.0004 29 1 0.6797 -2.5888 -0.9245 30 1 0.5711 -2.5263 0.8510 31 1 3.0695 -2.8575 -1.6609 32 1 2.3000 -4.4540 -1.8262 33 1 4.2255 -6.3645 -1.8650 34 1 3.8108 -6.3908 -0.1227 35 1 6.3828 -6.4395 -2.6059 36 1 6.4126 -7.8805 -1.5569 37 1 8.7123 -7.2360 -2.1477 38 1 8.4350 -6.9713 -0.4113 39 1 8.2581 -4.8221 -2.5675 40 1 9.6350 -5.0612 -1.4666 41 1 8.2435 -4.5672 0.4783 42 1 7.9926 -3.2644 -0.7146 43 1 0.6090 -4.9764 -0.0379 44 1 2.1860 -5.6979 0.3633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872587324.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:22 Heat of formation + Delta-G solvation = -174.177226 kcal Electronic energy + Delta-G solvation = -31299.975122 eV Core-core repulsion = 26644.111757 eV Total energy + Delta-G solvation = -4655.863366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.99531 -48.56110 -48.43051 -42.09857 -38.84692 -38.10064 -36.39268 -34.70760 -33.29169 -32.35632 -30.78653 -28.71474 -28.04416 -26.46633 -24.57825 -24.15851 -23.26725 -22.58229 -21.65213 -20.34445 -19.45071 -19.39246 -18.56358 -18.27717 -17.78884 -17.64314 -16.92734 -16.64015 -15.85258 -15.82185 -15.56267 -15.45399 -15.42709 -15.19659 -14.99170 -14.88628 -14.76846 -14.66326 -14.59349 -14.43014 -14.32120 -14.07645 -13.72250 -13.59765 -13.36154 -13.00537 -12.88134 -12.64755 -12.53721 -12.49845 -12.19700 -11.96088 -11.80313 -11.54923 -11.52971 -11.32270 -11.06723 -10.59061 -10.06438 -9.38930 -9.19723 -8.20415 -6.24925 1.34037 1.34925 1.43019 1.49635 1.83151 2.17420 2.39443 2.75920 2.90357 3.05529 3.13722 3.15108 3.50597 3.66166 3.69336 3.90215 3.97762 4.03270 4.12848 4.22869 4.26771 4.32226 4.48671 4.53164 4.58031 4.70820 4.79278 4.98732 4.99943 5.05020 5.06743 5.16231 5.19485 5.24756 5.37186 5.50698 5.60806 5.79797 5.95808 6.03103 6.15373 6.40451 6.72563 6.89578 7.42256 7.66277 8.89687 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.004790 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.922665 B = 5844.652160 C = 7809.009658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.514 4.514 8 H 0.045 0.955 9 C 0.190 3.810 10 N -0.562 5.562 11 C 0.332 3.668 12 N -0.622 5.622 13 C 0.090 3.910 14 C 0.115 3.885 15 H 0.103 0.897 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.128 4.128 19 C 0.148 3.852 20 N -0.640 5.640 21 C 0.689 3.311 22 O -0.633 6.633 23 C 0.014 3.986 24 C 0.453 3.547 25 F -0.192 7.192 26 F -0.181 7.181 27 F -0.189 7.189 28 H 0.264 0.736 29 H -0.014 1.014 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 -22.473 -4.077 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.065 3.935 10 N -0.289 5.289 11 C 0.121 3.879 12 N -0.361 5.361 13 C -0.032 4.032 14 C 0.012 3.988 15 H 0.121 0.879 16 C -0.157 4.157 17 C -0.152 4.152 18 C -0.167 4.167 19 C 0.027 3.973 20 N -0.380 5.380 21 C 0.391 3.609 22 O -0.513 6.513 23 C -0.116 4.116 24 C 0.398 3.602 25 F -0.174 7.174 26 F -0.162 7.162 27 F -0.170 7.170 28 H 0.073 0.927 29 H 0.004 0.996 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.113 0.887 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.522 -21.469 -3.655 25.121 hybrid contribution -0.509 1.482 0.041 1.567 sum 12.012 -19.988 -3.614 23.598 Atomic orbital electron populations 1.70027 1.06816 1.27577 1.52176 1.25580 0.95610 1.02040 0.95309 0.85658 0.78241 0.79946 0.78365 1.19762 1.19950 1.21170 1.21376 0.93073 0.91593 1.49226 0.93680 1.19857 0.90090 0.87148 0.96414 1.61549 1.30380 1.03821 1.33176 1.21406 0.80561 0.97633 0.88311 1.47480 1.06568 1.07639 1.74378 1.22804 0.95672 0.80254 1.04483 1.22469 0.92123 0.82748 1.01438 0.87883 1.22008 0.95353 1.01268 0.97029 1.21455 0.95461 0.95008 1.03303 1.21962 1.00870 0.96102 0.97733 1.21558 0.75973 0.99575 1.00236 1.47978 1.05041 1.07219 1.77740 1.16579 0.82279 0.84595 0.77403 1.90920 1.85912 1.15105 1.59396 1.23342 1.03010 0.96688 0.88517 1.20886 0.73829 0.72805 0.92690 1.93116 1.65769 1.62380 1.96102 1.93151 1.87785 1.43963 1.91331 1.93154 1.49840 1.92889 1.81145 0.92699 0.99611 0.93582 0.91415 0.88543 0.87174 0.88807 0.91930 0.87516 0.89766 0.90776 0.92813 0.88748 0.90302 0.92331 0.88691 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.01 0.78 5.46 84.65 0.46 1.25 16 3 Si 0.95 49.07 29.54 68.60 2.03 51.10 16 4 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 7 C -0.51 -31.12 8.45 25.60 0.22 -30.91 16 8 H 0.04 2.96 7.78 -2.91 -0.02 2.94 16 9 C 0.19 9.90 4.53 85.56 0.39 10.29 16 10 N -0.56 -23.23 4.29 -913.15 -3.92 -27.15 16 11 C 0.33 11.99 5.55 170.81 0.95 12.94 16 12 N -0.62 -19.64 3.15 -848.44 -2.67 -22.32 16 13 C 0.09 1.60 6.90 86.48 0.60 2.20 16 14 C 0.12 1.95 3.89 44.99 0.18 2.13 16 15 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 16 C -0.12 -1.23 5.30 30.70 0.16 -1.06 16 17 C -0.11 -1.12 5.78 30.61 0.18 -0.94 16 18 C -0.13 -1.85 6.07 30.75 0.19 -1.67 16 19 C 0.15 3.31 6.98 86.48 0.60 3.92 16 20 N -0.64 -17.40 3.07 -808.47 -2.48 -19.88 16 21 C 0.69 26.53 8.37 179.16 1.50 28.03 16 22 O -0.63 -32.94 17.30 -4.02 -0.07 -33.01 16 23 C 0.01 0.43 4.95 86.30 0.43 0.86 16 24 C 0.45 15.76 3.25 71.98 0.23 16.00 16 25 F -0.19 -8.15 14.45 44.97 0.65 -7.50 16 26 F -0.18 -5.24 17.32 44.97 0.78 -4.46 16 27 F -0.19 -7.45 17.12 44.97 0.77 -6.68 16 28 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 29 H -0.01 -0.73 8.02 -2.39 -0.02 -0.75 16 30 H 0.05 2.57 4.97 -2.39 -0.01 2.56 16 31 H 0.07 3.10 6.99 -2.38 -0.02 3.08 16 32 H 0.10 2.61 7.92 -2.39 -0.02 2.59 16 33 H 0.11 1.31 7.66 -2.39 -0.02 1.29 16 34 H 0.09 1.35 6.28 -2.39 -0.02 1.34 16 35 H 0.06 0.79 8.02 -2.38 -0.02 0.77 16 36 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.63 7.97 -2.39 -0.02 1.61 16 43 H 0.10 2.53 8.03 -2.39 -0.02 2.51 16 44 H 0.14 3.02 5.55 -2.38 -0.01 3.01 16 Total: -1.00 -83.91 360.83 2.46 -81.44 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.02 Total: 1.84 kcal Atomic # 6 Polarization: 36.95 SS G_CDS: 6.08 Total: 43.02 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -8.79 Total: -125.76 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.07 Total: -33.01 kcal Atomic # 9 Polarization: -20.84 SS G_CDS: 2.20 Total: -18.64 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.03 Total: 51.10 kcal Total: -83.91 2.46 -81.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872587324.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.733 kcal (2) G-P(sol) polarization free energy of solvation -83.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds