Wall clock time and date at job start Tue Mar 31 2020 18:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 120.00252 * 2 1 4 4 H 1.48506 * 109.47055 * 269.99905 * 3 2 1 5 5 H 1.48499 * 109.47294 * 29.99992 * 3 2 1 6 6 H 1.48503 * 109.47330 * 150.00394 * 3 2 1 7 7 C 1.40028 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.41335 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.40614 * 119.78687 * 180.02562 * 9 7 2 11 11 C 1.38308 * 119.12850 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.67171 * 359.72570 * 11 10 9 13 13 C 1.39645 * 119.49494 * 0.52085 * 12 11 10 14 14 N 1.39247 * 119.57372 * 179.74675 * 13 12 11 15 15 C 1.34773 * 119.99640 * 185.40601 * 14 13 12 16 16 O 1.21573 * 120.00236 * 354.85685 * 15 14 13 17 17 N 1.34781 * 119.99991 * 174.85961 * 15 14 13 18 18 C 1.46494 * 120.00287 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47058 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.47168 * 65.00445 * 19 18 17 21 21 C 1.42897 * 113.99900 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.48276 * 54.96916 * 21 20 19 23 23 C 1.53091 * 109.48341 * 174.99638 * 21 20 19 24 24 C 1.53174 * 109.21879 * 177.56896 * 23 21 20 25 25 C 1.53181 * 109.03112 * 303.11246 * 24 23 21 26 26 C 1.53092 * 109.21377 * 56.88879 * 25 24 23 27 27 O 1.42904 * 109.41243 * 302.42008 * 26 25 24 28 28 N 1.31928 * 120.84798 * 359.47176 * 13 12 11 29 29 H 0.97008 * 119.99772 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43370 * 359.97438 * 10 9 7 31 31 H 1.08000 * 120.66628 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.25092 * 180.26608 * 12 11 10 33 33 H 0.96999 * 120.00385 * 5.40495 * 14 13 12 34 34 H 0.97005 * 119.99492 * 359.97438 * 17 15 14 35 35 H 1.08999 * 109.47073 * 60.00073 * 18 17 15 36 36 H 1.09001 * 109.47354 * 299.99891 * 18 17 15 37 37 H 1.08994 * 109.47172 * 304.99759 * 19 18 17 38 38 H 1.09002 * 109.46964 * 185.00045 * 19 18 17 39 39 H 1.09000 * 109.52088 * 297.50659 * 23 21 20 40 40 H 1.08998 * 109.52108 * 57.62910 * 23 21 20 41 41 H 1.09002 * 109.54282 * 62.91660 * 24 23 21 42 42 H 1.08999 * 109.54331 * 183.18115 * 24 23 21 43 43 H 1.09000 * 109.47558 * 296.98353 * 25 24 23 44 44 H 1.09001 * 109.57891 * 176.84977 * 25 24 23 45 45 H 1.08999 * 109.48280 * 182.44481 * 26 25 24 46 46 H 1.09000 * 109.49493 * 62.41147 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6518 -0.0005 11 6 1.3030 -4.8415 -0.0011 12 6 -0.0831 -4.7934 0.0042 13 6 -0.7281 -3.5548 -0.0011 14 7 -2.1196 -3.5046 -0.0012 15 6 -2.7511 -2.3195 -0.1162 16 8 -2.1092 -1.2871 -0.1259 17 7 -4.0943 -2.2789 -0.2206 18 6 -4.7807 -0.9908 -0.3451 19 6 -6.2893 -1.2247 -0.4473 20 8 -6.7674 -1.7912 0.7744 21 6 -8.1725 -2.0507 0.7841 22 1 -8.4316 -2.6808 -0.0668 23 6 -8.5506 -2.7666 2.0834 24 6 -10.0660 -2.9876 2.1147 25 6 -10.7711 -1.6356 1.9681 26 6 -10.3073 -0.9634 0.6731 27 8 -8.8862 -0.8157 0.6973 28 7 -0.0359 -2.4317 -0.0007 29 1 -0.4850 0.8401 0.0004 30 1 3.0883 -3.6560 -0.0010 31 1 1.8212 -5.7891 -0.0007 32 1 -0.6593 -5.7069 0.0083 33 1 -2.6345 -4.3225 0.0816 34 1 -4.6063 -3.1028 -0.2132 35 1 -4.4314 -0.4781 -1.2413 36 1 -4.5661 -0.3785 0.5308 37 1 -6.4961 -1.9086 -1.2703 38 1 -6.7927 -0.2750 -0.6288 39 1 -8.0411 -3.7291 2.1305 40 1 -8.2539 -2.1554 2.9357 41 1 -10.3564 -3.6405 1.2916 42 1 -10.3481 -3.4462 3.0625 43 1 -10.5203 -1.0009 2.8180 44 1 -11.8498 -1.7881 1.9331 45 1 -10.7733 0.0181 0.5860 46 1 -10.5944 -1.5791 -0.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881146032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:22 Heat of formation + Delta-G solvation = -66.019198 kcal Electronic energy + Delta-G solvation = -28577.309110 eV Core-core repulsion = 24467.992568 eV Total energy + Delta-G solvation = -4109.316541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.01091 -39.34561 -37.82300 -37.16416 -34.35778 -34.09129 -33.70062 -32.89000 -30.94442 -30.20972 -29.40964 -28.16865 -25.45236 -25.08587 -23.61850 -22.87253 -21.66507 -21.06397 -20.66578 -19.74059 -17.97542 -17.76634 -17.11786 -16.99604 -16.30122 -16.01598 -15.19819 -15.11016 -14.85995 -14.56895 -14.46837 -14.35295 -13.96276 -13.64828 -13.55783 -13.27479 -13.12676 -12.91256 -12.72400 -12.58241 -11.91966 -11.86366 -11.69505 -11.57852 -11.53088 -11.21791 -11.08466 -10.94011 -10.87550 -10.57138 -10.38441 -10.08515 -9.85203 -9.84551 -9.60541 -9.01579 -8.94179 -8.35034 -7.86852 -7.11906 -6.84961 -6.02239 -4.30916 2.92339 3.00127 3.20919 3.23359 3.25814 3.34554 3.38415 3.63063 4.14033 4.33629 4.34775 4.38450 4.48969 4.58725 4.64779 4.86585 4.94208 4.98814 5.04183 5.12392 5.15532 5.27470 5.33064 5.42315 5.49252 5.56070 5.64264 5.84450 5.89651 6.07688 6.14334 6.18221 6.55959 6.70315 6.75102 6.88418 6.92713 6.95706 7.09672 7.32668 7.46401 7.70646 7.83984 7.89575 8.25959 8.38890 8.76911 8.89566 9.14744 9.71097 10.36428 10.58515 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.002419 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.870200 B =11574.608544 C =12973.545125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.307 4.307 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.388 3.612 14 N -0.673 5.673 15 C 0.664 3.336 16 O -0.464 6.464 17 N -0.756 5.756 18 C 0.149 3.851 19 C 0.052 3.948 20 O -0.359 6.359 21 C 0.256 3.744 22 H 0.052 0.948 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.161 4.161 26 C 0.072 3.928 27 O -0.406 6.406 28 N -0.471 5.471 29 H 0.272 0.728 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.385 0.615 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.151 -3.895 0.629 23.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.265 5.265 2 C -0.174 4.174 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.331 4.331 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.148 3.852 14 N -0.322 5.322 15 C 0.362 3.638 16 O -0.329 6.329 17 N -0.417 5.417 18 C 0.024 3.976 19 C -0.024 4.024 20 O -0.278 6.278 21 C 0.160 3.840 22 H 0.069 0.931 23 C -0.180 4.180 24 C -0.158 4.158 25 C -0.198 4.198 26 C -0.004 4.004 27 O -0.327 6.327 28 N -0.190 5.190 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.227 0.773 34 H 0.218 0.782 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.945 -1.716 0.751 23.022 hybrid contribution -0.095 -1.230 -0.135 1.241 sum -23.040 -2.945 0.616 23.236 Atomic orbital electron populations 1.70353 1.05548 1.27278 1.23365 1.26199 0.95144 1.00495 0.95548 0.86548 0.80536 0.82114 0.78914 1.19754 1.20373 1.18842 1.19561 0.93983 0.89389 1.42678 0.90045 1.18407 0.87205 0.91943 0.87899 1.21613 0.98483 0.93563 1.19413 1.20534 0.93129 0.96471 0.95902 1.20434 0.94741 0.94799 1.28562 1.18350 0.82508 0.90860 0.93503 1.42555 1.05182 1.07973 1.76476 1.16428 0.81357 0.85459 0.80589 1.91382 1.62398 1.29862 1.49218 1.45199 1.05713 1.08406 1.82377 1.21040 0.87507 0.86057 1.02970 1.22845 0.94785 0.98778 0.86024 1.88119 1.19490 1.82347 1.37885 1.22931 0.79824 0.84536 0.96720 0.93084 1.22017 0.96180 1.01724 0.98036 1.21586 0.94137 0.97166 1.02861 1.22253 1.00725 0.97386 0.99487 1.22495 0.79964 1.01633 0.96350 1.87827 1.18433 1.31921 1.94533 1.68704 1.06807 1.23138 1.20315 0.91650 0.88657 0.88707 0.89224 0.77306 0.78248 0.90293 0.90991 0.92805 0.90841 0.89931 0.89972 0.91625 0.90661 0.90674 0.90556 0.88543 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.56 8.99 55.55 0.50 -18.06 16 2 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 3 Si 0.89 19.83 29.56 -169.99 -5.02 14.80 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.43 -12.05 9.14 -37.73 -0.34 -12.40 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.27 7.85 6.55 -84.99 -0.56 7.29 16 10 C -0.31 -7.98 9.83 -38.66 -0.38 -8.36 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.34 9.95 -38.89 -0.39 -8.73 16 13 C 0.39 9.84 7.43 -154.99 -1.15 8.68 16 14 N -0.67 -13.99 5.39 -15.79 -0.09 -14.08 16 15 C 0.66 14.26 8.52 -86.92 -0.74 13.52 16 16 O -0.46 -12.31 12.11 5.30 0.06 -12.25 16 17 N -0.76 -11.99 5.51 -65.23 -0.36 -12.35 16 18 C 0.15 2.16 6.06 -4.04 -0.02 2.13 16 19 C 0.05 0.58 5.94 37.16 0.22 0.80 16 20 O -0.36 -4.40 10.21 -59.04 -0.60 -5.01 16 21 C 0.26 2.51 3.20 37.20 0.12 2.63 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 C -0.14 -1.17 5.78 -26.59 -0.15 -1.33 16 24 C -0.12 -0.71 6.03 -26.55 -0.16 -0.87 16 25 C -0.16 -0.93 6.13 -26.59 -0.16 -1.09 16 26 C 0.07 0.49 6.84 37.21 0.25 0.74 16 27 O -0.41 -4.23 10.03 -59.04 -0.59 -4.82 16 28 N -0.47 -13.71 5.74 -10.26 -0.06 -13.76 16 29 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 30 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.39 6.36 8.71 -40.82 -0.36 6.00 16 34 H 0.39 4.93 8.49 -40.82 -0.35 4.58 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -35.40 378.88 -11.41 -46.80 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.99 Total: 9.80 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -3.96 Total: 3.21 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.00 Total: -58.25 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.13 Total: -22.08 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.40 -11.41 -46.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.217 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds