Wall clock time and date at job start Tue Mar 31 2020 18:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 120.00252 * 2 1 4 4 H 1.48506 * 109.47055 * 269.99905 * 3 2 1 5 5 H 1.48499 * 109.47294 * 29.99992 * 3 2 1 6 6 H 1.48503 * 109.47330 * 150.00394 * 3 2 1 7 7 C 1.40028 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.41335 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.40614 * 119.78687 * 180.02562 * 9 7 2 11 11 C 1.38308 * 119.12850 * 180.02562 * 10 9 7 12 12 C 1.38694 * 118.67171 * 359.72570 * 11 10 9 13 13 C 1.39645 * 119.49494 * 0.52085 * 12 11 10 14 14 N 1.39247 * 119.57372 * 179.74675 * 13 12 11 15 15 C 1.34773 * 119.99640 * 185.40601 * 14 13 12 16 16 O 1.21573 * 120.00236 * 354.85685 * 15 14 13 17 17 N 1.34781 * 119.99991 * 174.85961 * 15 14 13 18 18 C 1.46494 * 120.00287 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47058 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.47168 * 65.00445 * 19 18 17 21 21 C 1.42897 * 113.99900 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.48276 * 54.96916 * 21 20 19 23 23 C 1.53091 * 109.48341 * 174.99638 * 21 20 19 24 24 C 1.53174 * 109.21879 * 177.56896 * 23 21 20 25 25 C 1.53181 * 109.03112 * 303.11246 * 24 23 21 26 26 C 1.53092 * 109.21377 * 56.88879 * 25 24 23 27 27 O 1.42904 * 109.41243 * 302.42008 * 26 25 24 28 28 N 1.31928 * 120.84798 * 359.47176 * 13 12 11 29 29 H 0.97008 * 119.99772 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43370 * 359.97438 * 10 9 7 31 31 H 1.08000 * 120.66628 * 180.02562 * 11 10 9 32 32 H 1.08001 * 120.25092 * 180.26608 * 12 11 10 33 33 H 0.96999 * 120.00385 * 5.40495 * 14 13 12 34 34 H 0.97005 * 119.99492 * 359.97438 * 17 15 14 35 35 H 1.08999 * 109.47073 * 60.00073 * 18 17 15 36 36 H 1.09001 * 109.47354 * 299.99891 * 18 17 15 37 37 H 1.08994 * 109.47172 * 304.99759 * 19 18 17 38 38 H 1.09002 * 109.46964 * 185.00045 * 19 18 17 39 39 H 1.09000 * 109.52088 * 297.50659 * 23 21 20 40 40 H 1.08998 * 109.52108 * 57.62910 * 23 21 20 41 41 H 1.09002 * 109.54282 * 62.91660 * 24 23 21 42 42 H 1.08999 * 109.54331 * 183.18115 * 24 23 21 43 43 H 1.09000 * 109.47558 * 296.98353 * 25 24 23 44 44 H 1.09001 * 109.57891 * 176.84977 * 25 24 23 45 45 H 1.08999 * 109.48280 * 182.44481 * 26 25 24 46 46 H 1.09000 * 109.49493 * 62.41147 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0464 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3008 -2.4366 -0.0005 10 6 2.0083 -3.6518 -0.0005 11 6 1.3030 -4.8415 -0.0011 12 6 -0.0831 -4.7934 0.0042 13 6 -0.7281 -3.5548 -0.0011 14 7 -2.1196 -3.5046 -0.0012 15 6 -2.7511 -2.3195 -0.1162 16 8 -2.1092 -1.2871 -0.1259 17 7 -4.0943 -2.2789 -0.2206 18 6 -4.7807 -0.9908 -0.3451 19 6 -6.2893 -1.2247 -0.4473 20 8 -6.7674 -1.7912 0.7744 21 6 -8.1725 -2.0507 0.7841 22 1 -8.4316 -2.6808 -0.0668 23 6 -8.5506 -2.7666 2.0834 24 6 -10.0660 -2.9876 2.1147 25 6 -10.7711 -1.6356 1.9681 26 6 -10.3073 -0.9634 0.6731 27 8 -8.8862 -0.8157 0.6973 28 7 -0.0359 -2.4317 -0.0007 29 1 -0.4850 0.8401 0.0004 30 1 3.0883 -3.6560 -0.0010 31 1 1.8212 -5.7891 -0.0007 32 1 -0.6593 -5.7069 0.0083 33 1 -2.6345 -4.3225 0.0816 34 1 -4.6063 -3.1028 -0.2132 35 1 -4.4314 -0.4781 -1.2413 36 1 -4.5661 -0.3785 0.5308 37 1 -6.4961 -1.9086 -1.2703 38 1 -6.7927 -0.2750 -0.6288 39 1 -8.0411 -3.7291 2.1305 40 1 -8.2539 -2.1554 2.9357 41 1 -10.3564 -3.6405 1.2916 42 1 -10.3481 -3.4462 3.0625 43 1 -10.5203 -1.0009 2.8180 44 1 -11.8498 -1.7881 1.9331 45 1 -10.7733 0.0181 0.5860 46 1 -10.5944 -1.5791 -0.1793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881146032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:21 Heat of formation + Delta-G solvation = -89.979517 kcal Electronic energy + Delta-G solvation = -28578.348107 eV Core-core repulsion = 24467.992568 eV Total energy + Delta-G solvation = -4110.355539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.12165 -40.64076 -39.52377 -38.19395 -36.01013 -35.32348 -34.80092 -34.67086 -32.19898 -31.76951 -30.92208 -29.55985 -27.39198 -25.72643 -24.33821 -24.19087 -23.32008 -22.82947 -21.43657 -21.23785 -19.78888 -18.78381 -18.55871 -18.07534 -17.68559 -16.95203 -16.57328 -16.28838 -16.21238 -16.01084 -15.78262 -15.56494 -15.33604 -14.87914 -14.81067 -14.57228 -14.38613 -14.23384 -13.83747 -13.70305 -13.64825 -13.33394 -12.86736 -12.70222 -12.59347 -12.52820 -12.29015 -12.24662 -12.16072 -11.86551 -11.74632 -11.52220 -11.47478 -10.92554 -10.84395 -10.78779 -10.47051 -9.90039 -9.80100 -9.07835 -8.75274 -7.99173 -6.38429 0.99422 1.31260 1.40428 1.53097 1.55528 1.84270 2.27874 2.28575 2.60019 2.94940 3.06932 3.42933 3.80037 3.81419 3.90591 3.99868 4.06255 4.10278 4.13455 4.18030 4.38710 4.44300 4.53645 4.61043 4.70720 4.73963 4.78081 4.84008 4.85501 4.94072 4.99300 5.02040 5.09490 5.09849 5.11653 5.30204 5.33847 5.67200 5.71389 5.89110 5.94995 6.02160 6.06515 6.27844 6.34465 6.45419 6.85049 7.10307 7.29260 8.04548 8.41579 8.61432 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016016 B = 0.002419 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.870200 B =11574.608544 C =12973.545125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.685 5.685 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.235 3.765 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.364 3.636 14 N -0.661 5.661 15 C 0.656 3.344 16 O -0.518 6.518 17 N -0.732 5.732 18 C 0.150 3.850 19 C 0.066 3.934 20 O -0.384 6.384 21 C 0.250 3.750 22 H 0.072 0.928 23 C -0.142 4.142 24 C -0.116 4.116 25 C -0.159 4.159 26 C 0.064 3.936 27 O -0.432 6.432 28 N -0.507 5.507 29 H 0.268 0.732 30 H 0.104 0.896 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.417 0.583 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.895 -5.683 0.210 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.304 5.304 2 C -0.218 4.218 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.104 0.896 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.124 3.876 14 N -0.312 5.312 15 C 0.355 3.645 16 O -0.386 6.386 17 N -0.393 5.393 18 C 0.026 3.974 19 C -0.010 4.010 20 O -0.304 6.304 21 C 0.155 3.845 22 H 0.089 0.911 23 C -0.180 4.180 24 C -0.154 4.154 25 C -0.196 4.196 26 C -0.012 4.012 27 O -0.354 6.354 28 N -0.226 5.226 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.254 0.746 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.769 -3.578 0.334 25.028 hybrid contribution 0.317 -0.867 0.009 0.923 sum -24.452 -4.444 0.343 24.855 Atomic orbital electron populations 1.70571 1.07161 1.27792 1.24850 1.27077 0.96043 1.04049 0.94632 0.85330 0.79083 0.76888 0.79103 1.19053 1.19997 1.17905 1.19888 0.94397 0.90452 1.44964 0.89617 1.18915 0.87959 0.93470 0.88688 1.21803 0.99193 0.93826 1.20533 1.21024 0.93464 0.97332 0.93954 1.20916 0.95162 0.95504 1.25538 1.18866 0.84190 0.91129 0.93436 1.42385 1.03908 1.08985 1.75892 1.16732 0.82730 0.84926 0.80151 1.91374 1.64045 1.31656 1.51493 1.44919 1.03841 1.09919 1.80639 1.21066 0.89880 0.84984 1.01495 1.22683 0.91873 0.99857 0.86604 1.88076 1.21445 1.82488 1.38349 1.23175 0.78521 0.84713 0.98078 0.91123 1.22055 0.98083 1.01269 0.96593 1.21602 0.92205 0.97571 1.03992 1.22247 1.02014 0.96926 0.98445 1.22750 0.78251 1.02723 0.97462 1.87789 1.20367 1.32508 1.94772 1.68658 1.07230 1.25383 1.21366 0.92106 0.87744 0.84407 0.85002 0.74609 0.76002 0.90810 0.93684 0.90267 0.90270 0.89498 0.92083 0.90121 0.89767 0.92016 0.88348 0.87734 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -41.23 8.99 21.84 0.20 -41.03 16 2 C 0.01 0.43 5.50 85.29 0.47 0.90 16 3 Si 0.97 42.30 29.56 68.60 2.03 44.33 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.47 -27.46 9.14 23.47 0.21 -27.25 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.69 16 9 C 0.24 14.09 6.55 40.21 0.26 14.35 16 10 C -0.33 -17.20 9.83 22.87 0.22 -16.97 16 11 C -0.03 -1.50 10.15 22.40 0.23 -1.27 16 12 C -0.35 -15.19 9.95 22.72 0.23 -14.97 16 13 C 0.36 18.37 7.43 133.24 0.99 19.35 16 14 N -0.66 -27.01 5.39 -322.14 -1.74 -28.75 16 15 C 0.66 28.59 8.52 179.05 1.53 30.12 16 16 O -0.52 -28.64 12.11 -3.94 -0.05 -28.68 16 17 N -0.73 -22.92 5.51 -478.56 -2.64 -25.56 16 18 C 0.15 4.41 6.06 86.38 0.52 4.94 16 19 C 0.07 1.41 5.94 71.98 0.43 1.84 16 20 O -0.38 -9.07 10.21 -126.21 -1.29 -10.36 16 21 C 0.25 4.54 3.20 72.01 0.23 4.77 16 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 23 C -0.14 -2.19 5.78 30.68 0.18 -2.02 16 24 C -0.12 -1.13 6.03 30.71 0.19 -0.95 16 25 C -0.16 -1.53 6.13 30.69 0.19 -1.34 16 26 C 0.06 0.75 6.84 72.01 0.49 1.24 16 27 O -0.43 -8.53 10.03 -126.21 -1.27 -9.80 16 28 N -0.51 -30.36 5.74 -186.37 -1.07 -31.43 16 29 H 0.27 15.30 8.29 -92.70 -0.77 14.53 16 30 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 31 H 0.14 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 33 H 0.42 12.53 8.71 -92.71 -0.81 11.72 16 34 H 0.40 9.62 8.49 -92.70 -0.79 8.83 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.63 7.75 -2.39 -0.02 1.61 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -81.38 378.88 -0.04 -81.43 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.59 Total: 37.11 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 6.37 Total: 12.75 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -5.24 Total: -126.77 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -2.60 Total: -48.84 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -81.38 -0.04 -81.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.552 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds