Wall clock time and date at job start Tue Mar 31 2020 18:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48506 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46845 * 299.99626 * 3 2 1 6 6 H 1.48493 * 109.47325 * 59.99874 * 3 2 1 7 7 C 1.40033 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.41333 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78721 * 179.97438 * 9 7 2 11 11 C 1.38312 * 119.13083 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67026 * 359.75441 * 11 10 9 13 13 C 1.39643 * 119.49414 * 0.49403 * 12 11 10 14 14 N 1.39249 * 119.57403 * 179.77683 * 13 12 11 15 15 C 1.34782 * 119.99842 * 185.40010 * 14 13 12 16 16 O 1.21574 * 120.00167 * 5.39171 * 15 14 13 17 17 N 1.34778 * 119.99542 * 185.38888 * 15 14 13 18 18 C 1.46922 * 120.63362 * 354.94904 * 17 15 14 19 19 C 1.53198 * 108.77340 * 126.39134 * 18 17 15 20 20 C 1.53042 * 109.31224 * 54.63616 * 19 18 17 21 21 C 1.53046 * 109.53907 * 298.63633 * 20 19 18 22 22 H 1.08992 * 109.49272 * 301.41701 * 21 20 19 23 23 O 1.42894 * 109.49706 * 181.34492 * 21 20 19 24 24 C 1.42899 * 114.00083 * 150.06259 * 23 21 20 25 25 C 1.52995 * 109.47380 * 180.02562 * 24 23 21 26 26 O 1.42894 * 109.47155 * 65.00140 * 25 24 23 27 27 C 1.46932 * 120.62707 * 174.95564 * 17 15 14 28 28 N 1.31930 * 120.84992 * 359.49214 * 13 12 11 29 29 H 0.96995 * 120.00316 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43526 * 0.02562 * 10 9 7 31 31 H 1.07996 * 120.66358 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.25303 * 180.24552 * 12 11 10 33 33 H 0.97000 * 119.99897 * 5.39242 * 14 13 12 34 34 H 1.08999 * 109.58602 * 6.60628 * 18 17 15 35 35 H 1.08992 * 109.59059 * 246.17732 * 18 17 15 36 36 H 1.09004 * 109.49874 * 294.68983 * 19 18 17 37 37 H 1.08998 * 109.52432 * 174.60436 * 19 18 17 38 38 H 1.08993 * 109.45907 * 178.61179 * 20 19 18 39 39 H 1.09001 * 109.45920 * 58.65261 * 20 19 18 40 40 H 1.09003 * 109.47365 * 300.00922 * 24 23 21 41 41 H 1.09003 * 109.46794 * 59.99752 * 24 23 21 42 42 H 1.09002 * 109.46824 * 185.00200 * 25 24 23 43 43 H 1.08995 * 109.47316 * 304.99673 * 25 24 23 44 44 H 0.96706 * 113.99907 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.58873 * 113.82154 * 27 17 15 46 46 H 1.09000 * 109.58573 * 353.39494 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4367 0.0016 10 6 2.0085 -3.6517 0.0016 11 6 1.3033 -4.8416 0.0022 12 6 -0.0828 -4.7935 0.0079 13 6 -0.7278 -3.5550 0.0025 14 7 -2.1194 -3.5048 0.0035 15 6 -2.7511 -2.3198 -0.1115 16 8 -2.1105 -1.3066 -0.3144 17 7 -4.0929 -2.2581 -0.0017 18 6 -4.8903 -3.4848 0.1329 19 6 -5.7790 -3.3614 1.3747 20 6 -6.6094 -2.0795 1.2774 21 6 -5.6761 -0.8675 1.2290 22 1 -5.0522 -0.8529 2.1226 23 8 -6.4528 0.3305 1.1697 24 6 -5.8235 1.4617 1.7751 25 6 -6.7402 2.6806 1.6542 26 8 -7.9302 2.4588 2.4135 27 6 -4.7862 -0.9627 -0.0144 28 7 -0.0357 -2.4318 0.0020 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6559 0.0012 31 1 1.8216 -5.7890 0.0026 32 1 -0.6589 -5.7070 0.0125 33 1 -2.6341 -4.3228 0.0869 34 1 -4.2261 -4.3420 0.2427 35 1 -5.5141 -3.6140 -0.7514 36 1 -5.1541 -3.3231 2.2670 37 1 -6.4447 -4.2225 1.4332 38 1 -7.2606 -2.0018 2.1479 39 1 -7.2156 -2.1073 0.3719 40 1 -5.6348 1.2523 2.8280 41 1 -4.8791 1.6653 1.2704 42 1 -6.2248 3.5621 2.0357 43 1 -7.0009 2.8368 0.6075 44 1 -8.5590 3.1930 2.3828 45 1 -5.4016 -0.8863 -0.9109 46 1 -4.0534 -0.1559 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:58 Heat of formation + Delta-G solvation = -54.019980 kcal Electronic energy + Delta-G solvation = -29679.007219 eV Core-core repulsion = 25570.211003 eV Total energy + Delta-G solvation = -4108.796216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.10799 -38.74585 -37.79427 -36.87676 -35.83571 -34.16765 -33.04722 -32.24417 -30.69146 -30.26728 -29.25172 -28.53639 -25.71091 -24.97797 -23.20247 -22.42309 -21.98203 -21.26706 -20.49784 -18.91951 -18.22360 -17.81227 -17.15341 -16.62584 -16.24860 -15.57643 -15.26309 -14.85912 -14.74133 -14.57131 -14.39484 -14.21653 -13.94602 -13.65402 -13.57360 -13.09953 -12.92358 -12.79097 -12.78641 -12.51969 -11.93698 -11.92342 -11.53679 -11.31776 -11.17675 -11.06336 -10.93504 -10.91905 -10.61908 -10.56846 -10.44226 -10.24520 -9.89074 -9.73882 -9.63726 -9.10253 -9.01121 -8.14173 -7.93327 -7.22337 -6.91646 -6.10691 -4.37540 2.83847 3.00780 3.13861 3.17782 3.21416 3.28059 3.60079 4.04971 4.07591 4.15427 4.36450 4.74416 4.82493 4.86327 4.95054 4.97548 4.98161 5.07072 5.21677 5.26981 5.44251 5.47373 5.58649 5.61237 5.74263 5.76990 5.86477 5.93612 6.07019 6.09557 6.15409 6.17821 6.47351 6.56524 6.80669 6.85955 6.88051 7.20789 7.23138 7.36238 7.40742 7.63186 7.73434 7.83252 8.17975 8.29491 8.62533 8.80747 9.07858 9.55633 10.28616 10.50703 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003888 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.310045 B = 7200.588793 C = 9637.590248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.652 5.652 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.272 3.728 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.357 4.357 13 C 0.386 3.614 14 N -0.673 5.673 15 C 0.672 3.328 16 O -0.463 6.463 17 N -0.637 5.637 18 C 0.111 3.889 19 C -0.132 4.132 20 C -0.111 4.111 21 C 0.076 3.924 22 H 0.064 0.936 23 O -0.373 6.373 24 C 0.059 3.941 25 C 0.079 3.921 26 O -0.567 6.567 27 C 0.117 3.883 28 N -0.472 5.472 29 H 0.270 0.730 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.376 0.624 45 H 0.064 0.936 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 0.502 2.723 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.270 5.270 2 C -0.171 4.171 3 Si 0.718 3.282 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.147 3.853 14 N -0.323 5.323 15 C 0.372 3.628 16 O -0.327 6.327 17 N -0.381 5.381 18 C -0.013 4.013 19 C -0.171 4.171 20 C -0.149 4.149 21 C 0.017 3.983 22 H 0.082 0.918 23 O -0.291 6.291 24 C -0.018 4.018 25 C 0.001 3.999 26 O -0.372 6.372 27 C -0.007 4.007 28 N -0.191 5.191 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.230 0.770 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.223 0.777 45 H 0.083 0.917 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.685 1.755 2.605 15.997 hybrid contribution 0.472 -0.131 0.062 0.494 sum -15.213 1.625 2.666 15.530 Atomic orbital electron populations 1.70354 1.05691 1.27063 1.23911 1.26178 0.95096 1.00524 0.95327 0.86492 0.80996 0.82384 0.78294 1.18584 1.20086 1.20150 1.19604 0.94050 0.89360 1.42589 0.89951 1.18394 0.87128 0.91971 0.87860 1.21626 0.98541 0.93540 1.19169 1.20543 0.93102 0.96528 0.95836 1.20432 0.94768 0.94763 1.28390 1.18346 0.82465 0.90909 0.93587 1.42759 1.05219 1.07956 1.76401 1.16287 0.80823 0.85260 0.80433 1.91338 1.61727 1.31616 1.47974 1.47387 1.04784 1.05971 1.79950 1.21565 0.94418 0.87640 0.97661 1.21927 0.98661 0.97590 0.98905 1.21525 0.97706 0.92598 1.03072 1.22481 0.92622 0.84984 0.98196 0.91814 1.87919 1.44003 1.17534 1.79623 1.22617 0.95125 0.86103 0.97934 1.22209 0.86256 0.95923 0.95518 1.86567 1.31192 1.46281 1.73198 1.21701 0.95495 0.86447 0.97102 1.68654 1.06916 1.23188 1.20346 0.91850 0.88580 0.88612 0.89199 0.76999 0.90599 0.91684 0.91277 0.90346 0.91233 0.91053 0.92615 0.91237 0.92161 0.92681 0.77724 0.91744 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.19 9.09 55.55 0.51 -17.68 16 2 C 0.06 1.54 5.50 -17.34 -0.10 1.44 16 3 Si 0.89 19.35 29.56 -169.99 -5.02 14.32 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.43 -11.81 9.14 -37.73 -0.34 -12.15 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 C 0.27 7.72 6.55 -85.00 -0.56 7.16 16 10 C -0.31 -7.77 9.83 -38.66 -0.38 -8.15 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -8.12 9.95 -38.89 -0.39 -8.51 16 13 C 0.39 9.59 7.41 -154.99 -1.15 8.45 16 14 N -0.67 -13.73 5.30 -15.79 -0.08 -13.81 16 15 C 0.67 14.21 8.25 -86.91 -0.72 13.50 16 16 O -0.46 -11.97 11.69 5.30 0.06 -11.90 16 17 N -0.64 -10.16 2.97 -178.50 -0.53 -10.69 16 18 C 0.11 1.28 6.43 -3.71 -0.02 1.26 16 19 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 20 C -0.11 -1.21 5.54 -26.69 -0.15 -1.36 16 21 C 0.08 1.00 2.76 -26.61 -0.07 0.93 16 22 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 23 O -0.37 -5.06 9.96 -40.08 -0.40 -5.46 16 24 C 0.06 0.70 6.13 37.16 0.23 0.93 16 25 C 0.08 0.76 7.43 37.16 0.28 1.03 16 26 O -0.57 -5.88 13.62 -40.08 -0.55 -6.42 16 27 C 0.12 1.76 6.04 -3.71 -0.02 1.74 16 28 N -0.47 -13.46 5.74 -10.26 -0.06 -13.51 16 29 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.39 6.32 6.15 -40.82 -0.25 6.07 16 34 H 0.08 0.81 5.57 -51.93 -0.29 0.52 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.67 8.09 -51.93 -0.42 0.26 16 41 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.38 1.98 9.12 45.56 0.42 2.40 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.66 6.92 -51.93 -0.36 1.30 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -35.34 373.56 -10.32 -45.66 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.92 Total: 10.31 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -3.96 Total: 3.57 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.17 Total: -55.71 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.88 Total: -23.78 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.34 -10.32 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.360 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds