Wall clock time and date at job start Tue Mar 31 2020 18:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48506 * 109.47315 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46845 * 299.99626 * 3 2 1 6 6 H 1.48493 * 109.47325 * 59.99874 * 3 2 1 7 7 C 1.40033 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.41333 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78721 * 179.97438 * 9 7 2 11 11 C 1.38312 * 119.13083 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67026 * 359.75441 * 11 10 9 13 13 C 1.39643 * 119.49414 * 0.49403 * 12 11 10 14 14 N 1.39249 * 119.57403 * 179.77683 * 13 12 11 15 15 C 1.34782 * 119.99842 * 185.40010 * 14 13 12 16 16 O 1.21574 * 120.00167 * 5.39171 * 15 14 13 17 17 N 1.34778 * 119.99542 * 185.38888 * 15 14 13 18 18 C 1.46922 * 120.63362 * 354.94904 * 17 15 14 19 19 C 1.53198 * 108.77340 * 126.39134 * 18 17 15 20 20 C 1.53042 * 109.31224 * 54.63616 * 19 18 17 21 21 C 1.53046 * 109.53907 * 298.63633 * 20 19 18 22 22 H 1.08992 * 109.49272 * 301.41701 * 21 20 19 23 23 O 1.42894 * 109.49706 * 181.34492 * 21 20 19 24 24 C 1.42899 * 114.00083 * 150.06259 * 23 21 20 25 25 C 1.52995 * 109.47380 * 180.02562 * 24 23 21 26 26 O 1.42894 * 109.47155 * 65.00140 * 25 24 23 27 27 C 1.46932 * 120.62707 * 174.95564 * 17 15 14 28 28 N 1.31930 * 120.84992 * 359.49214 * 13 12 11 29 29 H 0.96995 * 120.00316 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43526 * 0.02562 * 10 9 7 31 31 H 1.07996 * 120.66358 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.25303 * 180.24552 * 12 11 10 33 33 H 0.97000 * 119.99897 * 5.39242 * 14 13 12 34 34 H 1.08999 * 109.58602 * 6.60628 * 18 17 15 35 35 H 1.08992 * 109.59059 * 246.17732 * 18 17 15 36 36 H 1.09004 * 109.49874 * 294.68983 * 19 18 17 37 37 H 1.08998 * 109.52432 * 174.60436 * 19 18 17 38 38 H 1.08993 * 109.45907 * 178.61179 * 20 19 18 39 39 H 1.09001 * 109.45920 * 58.65261 * 20 19 18 40 40 H 1.09003 * 109.47365 * 300.00922 * 24 23 21 41 41 H 1.09003 * 109.46794 * 59.99752 * 24 23 21 42 42 H 1.09002 * 109.46824 * 185.00200 * 25 24 23 43 43 H 1.08995 * 109.47316 * 304.99673 * 25 24 23 44 44 H 0.96706 * 113.99907 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.58873 * 113.82154 * 27 17 15 46 46 H 1.09000 * 109.58573 * 353.39494 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4367 0.0016 10 6 2.0085 -3.6517 0.0016 11 6 1.3033 -4.8416 0.0022 12 6 -0.0828 -4.7935 0.0079 13 6 -0.7278 -3.5550 0.0025 14 7 -2.1194 -3.5048 0.0035 15 6 -2.7511 -2.3198 -0.1115 16 8 -2.1105 -1.3066 -0.3144 17 7 -4.0929 -2.2581 -0.0017 18 6 -4.8903 -3.4848 0.1329 19 6 -5.7790 -3.3614 1.3747 20 6 -6.6094 -2.0795 1.2774 21 6 -5.6761 -0.8675 1.2290 22 1 -5.0522 -0.8529 2.1226 23 8 -6.4528 0.3305 1.1697 24 6 -5.8235 1.4617 1.7751 25 6 -6.7402 2.6806 1.6542 26 8 -7.9302 2.4588 2.4135 27 6 -4.7862 -0.9627 -0.0144 28 7 -0.0357 -2.4318 0.0020 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6559 0.0012 31 1 1.8216 -5.7890 0.0026 32 1 -0.6589 -5.7070 0.0125 33 1 -2.6341 -4.3228 0.0869 34 1 -4.2261 -4.3420 0.2427 35 1 -5.5141 -3.6140 -0.7514 36 1 -5.1541 -3.3231 2.2670 37 1 -6.4447 -4.2225 1.4332 38 1 -7.2606 -2.0018 2.1479 39 1 -7.2156 -2.1073 0.3719 40 1 -5.6348 1.2523 2.8280 41 1 -4.8791 1.6653 1.2704 42 1 -6.2248 3.5621 2.0357 43 1 -7.0009 2.8368 0.6075 44 1 -8.5590 3.1930 2.3828 45 1 -5.4016 -0.8863 -0.9109 46 1 -4.0534 -0.1559 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:58 Heat of formation + Delta-G solvation = -79.185607 kcal Electronic energy + Delta-G solvation = -29680.098482 eV Core-core repulsion = 25570.211003 eV Total energy + Delta-G solvation = -4109.887480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54667 -40.16407 -39.27435 -37.93323 -36.91501 -35.98343 -34.90109 -33.44381 -32.19636 -31.75560 -30.80684 -29.76189 -27.53508 -26.33337 -24.20271 -23.75597 -23.32382 -23.03067 -21.79565 -20.41459 -19.81640 -18.79212 -18.55521 -18.04375 -17.63329 -16.80606 -16.53519 -16.30951 -16.24844 -16.09785 -15.74222 -15.58948 -15.19490 -14.91999 -14.86387 -14.61722 -14.51183 -13.94637 -13.85613 -13.70113 -13.64737 -13.48650 -12.91314 -12.72282 -12.55315 -12.47000 -12.34088 -12.20722 -12.01674 -11.85420 -11.72057 -11.61308 -11.51233 -10.99408 -10.89701 -10.84458 -10.73604 -9.89326 -9.46806 -9.12967 -8.76950 -8.03130 -6.40984 0.95672 1.28285 1.38379 1.51025 1.53123 1.62534 2.26080 2.49001 2.58573 3.02497 3.03851 3.34435 3.74356 3.81392 3.93813 4.03453 4.08034 4.11408 4.15968 4.19317 4.34545 4.44791 4.49327 4.55761 4.66185 4.72071 4.73429 4.74822 4.80945 4.84421 4.93169 4.97230 5.03103 5.06122 5.14419 5.28169 5.31020 5.58785 5.67871 5.83423 5.92659 5.99368 6.16147 6.25750 6.40634 6.82222 6.89891 7.05184 7.12768 7.93835 8.37918 8.58095 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003888 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.310045 B = 7200.588793 C = 9637.590248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.237 3.763 10 C -0.329 4.329 11 C -0.033 4.033 12 C -0.345 4.345 13 C 0.363 3.637 14 N -0.660 5.660 15 C 0.664 3.336 16 O -0.517 6.517 17 N -0.629 5.629 18 C 0.103 3.897 19 C -0.123 4.123 20 C -0.106 4.106 21 C 0.082 3.918 22 H 0.046 0.954 23 O -0.380 6.380 24 C 0.050 3.950 25 C 0.083 3.917 26 O -0.589 6.589 27 C 0.120 3.880 28 N -0.508 5.508 29 H 0.267 0.733 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.415 0.585 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.398 0.602 45 H 0.076 0.924 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.327 -1.064 2.891 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.214 4.214 3 Si 0.794 3.206 4 H -0.176 1.176 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.497 4.497 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.352 4.352 11 C -0.057 4.057 12 C -0.370 4.370 13 C 0.124 3.876 14 N -0.313 5.313 15 C 0.364 3.636 16 O -0.385 6.385 17 N -0.372 5.372 18 C -0.019 4.019 19 C -0.162 4.162 20 C -0.144 4.144 21 C 0.023 3.977 22 H 0.064 0.936 23 O -0.298 6.298 24 C -0.026 4.026 25 C 0.005 3.995 26 O -0.398 6.398 27 C -0.004 4.004 28 N -0.227 5.227 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.248 0.752 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.408 0.133 2.785 17.630 hybrid contribution 0.861 0.191 0.008 0.882 sum -16.547 0.324 2.793 16.784 Atomic orbital electron populations 1.70561 1.07262 1.27654 1.25244 1.27033 0.95964 1.03973 0.94452 0.85304 0.79701 0.77268 0.78332 1.17648 1.19736 1.19492 1.19917 0.94401 0.90459 1.44922 0.89644 1.18890 0.87878 0.93463 0.88635 1.21813 0.99221 0.93825 1.20357 1.21029 0.93439 0.97366 0.93895 1.20912 0.95180 0.95467 1.25445 1.18856 0.84119 0.91162 0.93473 1.42587 1.03927 1.08898 1.75907 1.16572 0.82280 0.84703 0.80079 1.91322 1.63616 1.33323 1.50271 1.47335 1.03339 1.07917 1.78569 1.21949 0.94623 0.85672 0.99653 1.21905 0.98551 0.98421 0.97283 1.21537 0.97331 0.91536 1.03966 1.22429 0.92832 0.86282 0.96136 0.93627 1.87911 1.44136 1.17943 1.79836 1.22774 0.95784 0.86753 0.97313 1.22198 0.86060 0.95194 0.96047 1.86497 1.31857 1.48071 1.73332 1.21698 0.94795 0.85207 0.98722 1.68612 1.07314 1.25434 1.21381 0.92185 0.87722 0.84346 0.84981 0.74513 0.89462 0.89314 0.92505 0.86644 0.90442 0.89968 0.93264 0.91984 0.89908 0.92046 0.75231 0.90598 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.64 9.09 21.84 0.20 -40.45 16 2 C 0.01 0.62 5.50 85.29 0.47 1.09 16 3 Si 0.97 41.45 29.56 68.60 2.03 43.48 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.47 -27.07 9.14 23.47 0.21 -26.85 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.24 13.98 6.55 40.20 0.26 14.24 16 10 C -0.33 -16.86 9.83 22.87 0.22 -16.64 16 11 C -0.03 -1.45 10.15 22.40 0.23 -1.22 16 12 C -0.34 -14.86 9.95 22.72 0.23 -14.64 16 13 C 0.36 18.06 7.41 133.24 0.99 19.05 16 14 N -0.66 -26.66 5.30 -322.13 -1.71 -28.37 16 15 C 0.66 28.72 8.25 179.05 1.48 30.20 16 16 O -0.52 -28.28 11.69 -3.95 -0.05 -28.33 16 17 N -0.63 -19.95 2.97 -836.91 -2.49 -22.43 16 18 C 0.10 2.11 6.43 86.37 0.56 2.66 16 19 C -0.12 -2.08 6.08 30.67 0.19 -1.89 16 20 C -0.11 -2.08 5.54 30.62 0.17 -1.91 16 21 C 0.08 2.17 2.76 30.67 0.08 2.26 16 22 H 0.05 1.36 7.79 -2.39 -0.02 1.34 16 23 O -0.38 -10.32 9.96 -144.34 -1.44 -11.75 16 24 C 0.05 1.24 6.13 71.98 0.44 1.68 16 25 C 0.08 1.53 7.43 71.98 0.53 2.07 16 26 O -0.59 -11.51 13.62 -144.34 -1.97 -13.48 16 27 C 0.12 3.70 6.04 86.36 0.52 4.23 16 28 N -0.51 -29.97 5.74 -186.37 -1.07 -31.04 16 29 H 0.27 14.88 8.29 -92.71 -0.77 14.11 16 30 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 31 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 32 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 33 H 0.41 12.42 6.15 -92.71 -0.57 11.85 16 34 H 0.09 1.58 5.57 -2.39 -0.01 1.56 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.25 8.09 -2.39 -0.02 1.23 16 41 H 0.06 1.58 8.03 -2.39 -0.02 1.57 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.40 3.57 9.12 -74.05 -0.68 2.89 16 45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.06 2.26 6.92 -2.39 -0.02 2.24 16 Total: -1.00 -81.87 373.56 -0.13 -82.01 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.23 Total: 36.05 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 6.58 Total: 14.31 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.07 Total: -122.29 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -3.45 Total: -53.56 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -81.87 -0.13 -82.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.823 kcal (2) G-P(sol) polarization free energy of solvation -81.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds