Wall clock time and date at job start Tue Mar 31 2020 18:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86793 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47035 * 269.99837 * 3 2 1 5 5 H 1.48497 * 109.47293 * 29.99656 * 3 2 1 6 6 H 1.48507 * 109.47243 * 149.99914 * 3 2 1 7 7 C 1.40025 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.41335 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.40612 * 119.78442 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.12779 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.66886 * 359.75665 * 11 10 9 13 13 C 1.39647 * 119.49728 * 0.49371 * 12 11 10 14 14 N 1.39251 * 119.57440 * 179.77426 * 13 12 11 15 15 C 1.34775 * 119.99685 * 185.41003 * 14 13 12 16 16 O 1.21576 * 120.00228 * 354.84821 * 15 14 13 17 17 N 1.34779 * 119.99958 * 174.85563 * 15 14 13 18 18 C 1.46490 * 120.00128 * 179.72118 * 17 15 14 19 19 C 1.53002 * 109.47416 * 180.27383 * 18 17 15 20 20 O 1.42901 * 109.46934 * 64.99890 * 19 18 17 21 21 C 1.42899 * 114.00125 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47280 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.86783 * 54.30389 * 22 21 20 24 24 C 1.54106 * 109.87708 * 175.30863 * 22 21 20 25 25 C 1.54813 * 104.18538 * 121.45785 * 24 22 21 26 26 C 1.54995 * 102.09381 * 20.87874 * 25 24 22 27 27 O 1.43745 * 109.87942 * 293.29551 * 22 21 20 28 28 N 1.31927 * 120.84472 * 359.49142 * 13 12 11 29 29 H 0.97000 * 119.99515 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.43787 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.66821 * 180.02562 * 11 10 9 32 32 H 1.08003 * 120.25184 * 180.24411 * 12 11 10 33 33 H 0.97004 * 120.00175 * 5.39780 * 14 13 12 34 34 H 0.97003 * 119.99776 * 359.97438 * 17 15 14 35 35 H 1.09008 * 109.47166 * 300.27563 * 18 17 15 36 36 H 1.09003 * 109.47362 * 60.27128 * 18 17 15 37 37 H 1.08998 * 109.47325 * 184.99515 * 19 18 17 38 38 H 1.08996 * 109.47198 * 305.00341 * 19 18 17 39 39 H 1.09001 * 109.47163 * 300.00247 * 21 20 19 40 40 H 1.09002 * 109.46925 * 59.99992 * 21 20 19 41 41 H 1.09001 * 110.48214 * 240.13445 * 24 22 21 42 42 H 1.08997 * 110.48615 * 2.78042 * 24 22 21 43 43 H 1.08998 * 110.90154 * 139.07755 * 25 24 22 44 44 H 1.08995 * 110.90521 * 262.68052 * 25 24 22 45 45 H 1.09004 * 110.61862 * 81.47415 * 26 25 24 46 46 H 1.08999 * 110.61897 * 204.32064 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.6999 6 1 3.5391 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4366 0.0016 10 6 2.0083 -3.6518 0.0027 11 6 1.3030 -4.8416 0.0043 12 6 -0.0831 -4.7934 0.0100 13 6 -0.7281 -3.5548 0.0034 14 7 -2.1197 -3.5045 0.0043 15 6 -2.7512 -2.3196 -0.1120 16 8 -2.1093 -1.2872 -0.1235 17 7 -4.0944 -2.2792 -0.2156 18 6 -4.7814 -0.9910 -0.3358 19 6 -6.2905 -1.2245 -0.4304 20 8 -6.7623 -1.7917 0.7934 21 6 -8.1676 -2.0500 0.8106 22 6 -8.5588 -2.6535 2.1611 23 1 -8.2204 -2.0045 2.9687 24 6 -10.0883 -2.8269 2.2342 25 6 -10.2870 -4.3424 2.4801 26 6 -8.9090 -4.7618 3.0526 27 8 -7.9706 -3.9574 2.3026 28 7 -0.0359 -2.4317 0.0020 29 1 -0.4849 0.8401 -0.0004 30 1 3.0883 -3.6560 0.0031 31 1 1.8212 -5.7891 0.0056 32 1 -0.6593 -5.7068 0.0153 33 1 -2.6345 -4.3224 0.0885 34 1 -4.6065 -3.1030 -0.2067 35 1 -4.5625 -0.3793 0.5395 36 1 -4.4362 -0.4775 -1.2333 37 1 -6.7947 -0.2747 -0.6088 38 1 -6.5016 -1.9081 -1.2527 39 1 -8.7104 -1.1172 0.6581 40 1 -8.4180 -2.7505 0.0139 41 1 -10.4986 -2.2489 3.0623 42 1 -10.5514 -2.5292 1.2934 43 1 -11.0799 -4.5177 3.2072 44 1 -10.4952 -4.8640 1.5460 45 1 -8.8478 -4.5284 4.1156 46 1 -8.7300 -5.8236 2.8830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881151624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:10 Heat of formation + Delta-G solvation = -57.100893 kcal Electronic energy + Delta-G solvation = -28455.521392 eV Core-core repulsion = 24346.591578 eV Total energy + Delta-G solvation = -4108.929815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.85716 -39.32985 -38.04115 -37.37742 -34.37501 -33.68670 -32.85799 -32.54178 -31.09316 -30.18641 -29.39879 -28.15038 -25.53525 -25.32971 -22.90687 -22.42419 -21.67043 -21.26076 -20.99381 -19.68744 -17.93321 -17.32107 -17.07296 -16.69496 -16.26364 -16.07644 -16.00136 -15.26425 -14.68351 -14.52143 -14.37464 -14.21009 -14.02087 -13.87041 -13.56292 -12.95205 -12.92674 -12.73541 -12.44205 -12.27057 -12.11998 -11.84819 -11.81371 -11.57278 -11.50214 -11.19957 -11.09588 -11.05952 -10.86087 -10.54892 -10.36360 -9.94811 -9.83410 -9.81532 -9.57461 -8.97402 -8.91578 -8.29332 -7.84206 -7.09023 -6.81511 -6.00032 -4.28703 2.94532 3.22919 3.23906 3.26596 3.32969 3.36407 3.44526 3.55950 4.12183 4.15298 4.37400 4.40615 4.50757 4.70964 4.83080 4.89249 4.94430 5.02962 5.06458 5.13977 5.15568 5.19211 5.25958 5.30814 5.37828 5.48030 5.58624 5.65536 5.90159 6.08945 6.16819 6.20801 6.58873 6.59214 6.74053 6.91695 6.95379 7.00990 7.15826 7.35170 7.50723 7.73578 7.87724 7.92214 8.28649 8.41706 8.80868 8.92701 9.17177 9.75684 10.39208 10.60694 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002464 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.050415 B =11360.997071 C =12691.328322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.308 4.308 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.388 3.612 14 N -0.673 5.673 15 C 0.664 3.336 16 O -0.467 6.467 17 N -0.755 5.755 18 C 0.150 3.850 19 C 0.051 3.949 20 O -0.374 6.374 21 C 0.064 3.936 22 C 0.078 3.922 23 H 0.077 0.923 24 C -0.150 4.150 25 C -0.155 4.155 26 C 0.042 3.958 27 O -0.360 6.360 28 N -0.471 5.471 29 H 0.271 0.729 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.388 0.612 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.513 -4.187 1.981 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.266 5.266 2 C -0.174 4.174 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.149 3.851 14 N -0.322 5.322 15 C 0.362 3.638 16 O -0.331 6.331 17 N -0.415 5.415 18 C 0.025 3.975 19 C -0.026 4.026 20 O -0.293 6.293 21 C -0.013 4.013 22 C 0.020 3.980 23 H 0.095 0.905 24 C -0.188 4.188 25 C -0.193 4.193 26 C -0.035 4.035 27 O -0.279 6.279 28 N -0.190 5.190 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.220 0.780 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.208 -2.243 2.023 23.404 hybrid contribution -0.237 -0.894 -0.072 0.927 sum -23.445 -3.137 1.952 23.734 Atomic orbital electron populations 1.70365 1.05520 1.27196 1.23475 1.26200 0.95137 1.00466 0.95559 0.86553 0.80545 0.82156 0.78887 1.19774 1.20414 1.18845 1.19551 0.93962 0.89389 1.42805 0.90069 1.18408 0.87220 0.91939 0.87866 1.21611 0.98465 0.93569 1.19459 1.20536 0.93129 0.96471 0.95922 1.20447 0.94739 0.94844 1.28421 1.18355 0.82534 0.90842 0.93419 1.42562 1.05157 1.08071 1.76379 1.16422 0.81376 0.85432 0.80521 1.91375 1.62477 1.29859 1.49407 1.45165 1.05659 1.08464 1.82240 1.20999 0.87627 0.86165 1.02728 1.22831 0.95101 0.97775 0.86846 1.88039 1.21922 1.83175 1.36149 1.22686 0.83193 0.98639 0.96795 1.22748 0.91747 0.86340 0.97178 0.90533 1.22939 0.95322 0.97186 1.03319 1.23137 0.98479 0.95480 1.02217 1.23610 0.87403 0.96652 0.95802 1.89068 1.41881 1.21978 1.75011 1.68704 1.06789 1.23152 1.20323 0.91706 0.88671 0.88707 0.89193 0.77225 0.77989 0.91175 0.90475 0.92011 0.92799 0.92227 0.92698 0.90133 0.90218 0.90104 0.90403 0.92115 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.67 8.99 55.55 0.50 -18.18 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 3 Si 0.89 19.91 29.56 -169.99 -5.02 14.88 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.43 -12.17 9.14 -37.74 -0.34 -12.51 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.27 7.93 6.55 -85.00 -0.56 7.38 16 10 C -0.31 -8.07 9.83 -38.66 -0.38 -8.45 16 11 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 12 C -0.36 -8.48 9.95 -38.89 -0.39 -8.86 16 13 C 0.39 10.03 7.43 -154.99 -1.15 8.88 16 14 N -0.67 -14.45 5.39 -15.79 -0.09 -14.54 16 15 C 0.66 14.66 8.52 -86.92 -0.74 13.92 16 16 O -0.47 -12.53 12.11 5.30 0.06 -12.47 16 17 N -0.75 -12.50 5.51 -65.23 -0.36 -12.86 16 18 C 0.15 2.17 6.06 -4.05 -0.02 2.15 16 19 C 0.05 0.55 6.07 37.16 0.23 0.77 16 20 O -0.37 -4.59 10.28 -37.24 -0.38 -4.98 16 21 C 0.06 0.58 5.39 37.16 0.20 0.78 16 22 C 0.08 0.71 3.70 -26.15 -0.10 0.61 16 23 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.15 -0.88 6.64 -25.20 -0.17 -1.05 16 25 C -0.16 -0.87 7.16 -24.72 -0.18 -1.04 16 26 C 0.04 0.32 7.72 38.21 0.29 0.62 16 27 O -0.36 -4.13 11.19 -37.24 -0.42 -4.55 16 28 N -0.47 -13.87 5.74 -10.26 -0.06 -13.93 16 29 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 30 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.39 6.74 8.71 -40.82 -0.36 6.38 16 34 H 0.39 5.47 8.49 -40.82 -0.35 5.12 16 35 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.38 7.70 -51.93 -0.40 -0.02 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -36.30 382.81 -10.79 -47.09 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.99 Total: 10.39 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.80 Total: 3.36 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.00 Total: -59.50 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.74 Total: -21.99 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.30 -10.79 -47.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.014 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds