Wall clock time and date at job start Tue Mar 31 2020 18:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86793 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47035 * 269.99837 * 3 2 1 5 5 H 1.48497 * 109.47293 * 29.99656 * 3 2 1 6 6 H 1.48507 * 109.47243 * 149.99914 * 3 2 1 7 7 C 1.40025 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.41335 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.40612 * 119.78442 * 180.02562 * 9 7 2 11 11 C 1.38314 * 119.12779 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.66886 * 359.75665 * 11 10 9 13 13 C 1.39647 * 119.49728 * 0.49371 * 12 11 10 14 14 N 1.39251 * 119.57440 * 179.77426 * 13 12 11 15 15 C 1.34775 * 119.99685 * 185.41003 * 14 13 12 16 16 O 1.21576 * 120.00228 * 354.84821 * 15 14 13 17 17 N 1.34779 * 119.99958 * 174.85563 * 15 14 13 18 18 C 1.46490 * 120.00128 * 179.72118 * 17 15 14 19 19 C 1.53002 * 109.47416 * 180.27383 * 18 17 15 20 20 O 1.42901 * 109.46934 * 64.99890 * 19 18 17 21 21 C 1.42899 * 114.00125 * 179.97438 * 20 19 18 22 22 C 1.52999 * 109.47280 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.86783 * 54.30389 * 22 21 20 24 24 C 1.54106 * 109.87708 * 175.30863 * 22 21 20 25 25 C 1.54813 * 104.18538 * 121.45785 * 24 22 21 26 26 C 1.54995 * 102.09381 * 20.87874 * 25 24 22 27 27 O 1.43745 * 109.87942 * 293.29551 * 22 21 20 28 28 N 1.31927 * 120.84472 * 359.49142 * 13 12 11 29 29 H 0.97000 * 119.99515 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.43787 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.66821 * 180.02562 * 11 10 9 32 32 H 1.08003 * 120.25184 * 180.24411 * 12 11 10 33 33 H 0.97004 * 120.00175 * 5.39780 * 14 13 12 34 34 H 0.97003 * 119.99776 * 359.97438 * 17 15 14 35 35 H 1.09008 * 109.47166 * 300.27563 * 18 17 15 36 36 H 1.09003 * 109.47362 * 60.27128 * 18 17 15 37 37 H 1.08998 * 109.47325 * 184.99515 * 19 18 17 38 38 H 1.08996 * 109.47198 * 305.00341 * 19 18 17 39 39 H 1.09001 * 109.47163 * 300.00247 * 21 20 19 40 40 H 1.09002 * 109.46925 * 59.99992 * 21 20 19 41 41 H 1.09001 * 110.48214 * 240.13445 * 24 22 21 42 42 H 1.08997 * 110.48615 * 2.78042 * 24 22 21 43 43 H 1.08998 * 110.90154 * 139.07755 * 25 24 22 44 44 H 1.08995 * 110.90521 * 262.68052 * 25 24 22 45 45 H 1.09004 * 110.61862 * 81.47415 * 26 25 24 46 46 H 1.08999 * 110.61897 * 204.32064 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6526 0.6999 6 1 3.5391 1.4401 0.7001 7 6 2.0075 -1.2127 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4366 0.0016 10 6 2.0083 -3.6518 0.0027 11 6 1.3030 -4.8416 0.0043 12 6 -0.0831 -4.7934 0.0100 13 6 -0.7281 -3.5548 0.0034 14 7 -2.1197 -3.5045 0.0043 15 6 -2.7512 -2.3196 -0.1120 16 8 -2.1093 -1.2872 -0.1235 17 7 -4.0944 -2.2792 -0.2156 18 6 -4.7814 -0.9910 -0.3358 19 6 -6.2905 -1.2245 -0.4304 20 8 -6.7623 -1.7917 0.7934 21 6 -8.1676 -2.0500 0.8106 22 6 -8.5588 -2.6535 2.1611 23 1 -8.2204 -2.0045 2.9687 24 6 -10.0883 -2.8269 2.2342 25 6 -10.2870 -4.3424 2.4801 26 6 -8.9090 -4.7618 3.0526 27 8 -7.9706 -3.9574 2.3026 28 7 -0.0359 -2.4317 0.0020 29 1 -0.4849 0.8401 -0.0004 30 1 3.0883 -3.6560 0.0031 31 1 1.8212 -5.7891 0.0056 32 1 -0.6593 -5.7068 0.0153 33 1 -2.6345 -4.3224 0.0885 34 1 -4.6065 -3.1030 -0.2067 35 1 -4.5625 -0.3793 0.5395 36 1 -4.4362 -0.4775 -1.2333 37 1 -6.7947 -0.2747 -0.6088 38 1 -6.5016 -1.9081 -1.2527 39 1 -8.7104 -1.1172 0.6581 40 1 -8.4180 -2.7505 0.0139 41 1 -10.4986 -2.2489 3.0623 42 1 -10.5514 -2.5292 1.2934 43 1 -11.0799 -4.5177 3.2072 44 1 -10.4952 -4.8640 1.5460 45 1 -8.8478 -4.5284 4.1156 46 1 -8.7300 -5.8236 2.8830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881151624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:09 Heat of formation + Delta-G solvation = -82.992540 kcal Electronic energy + Delta-G solvation = -28456.644139 eV Core-core repulsion = 24346.591578 eV Total energy + Delta-G solvation = -4110.052561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09971 -40.48010 -39.56604 -38.62943 -36.03406 -35.35870 -34.79784 -33.14086 -32.20806 -31.88615 -30.96916 -29.55057 -27.39406 -26.10833 -24.33060 -23.32588 -22.98073 -22.82641 -21.85562 -21.41787 -19.78308 -18.77997 -18.13087 -17.98663 -17.39568 -16.94194 -16.76221 -16.56371 -16.25857 -16.13263 -16.07642 -15.62436 -15.29884 -14.96829 -14.61638 -14.51219 -14.46620 -14.30627 -13.71800 -13.60778 -13.18557 -12.97389 -12.85975 -12.70017 -12.61340 -12.52982 -12.29414 -12.25602 -12.12795 -12.02922 -11.74577 -11.55864 -11.48410 -10.86055 -10.84411 -10.64081 -10.57782 -9.89500 -9.78707 -9.08045 -8.75456 -7.98990 -6.38609 0.99079 1.30803 1.40393 1.53199 1.55727 1.86735 2.28830 2.56395 2.63778 2.96311 3.06855 3.43449 3.63223 3.81779 3.97347 4.02474 4.10060 4.18950 4.25858 4.27738 4.38272 4.42375 4.48723 4.53324 4.63465 4.71719 4.75594 4.81438 4.85377 4.91521 4.94841 4.98735 4.99097 5.08110 5.08803 5.19742 5.30477 5.68360 5.73225 5.88538 5.94577 5.96578 6.06279 6.27670 6.33801 6.45144 6.85006 7.10017 7.28233 8.04344 8.41235 8.61729 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002464 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.050415 B =11360.997071 C =12691.328322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.685 5.685 2 C 0.007 3.993 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.235 3.765 10 C -0.330 4.330 11 C -0.033 4.033 12 C -0.347 4.347 13 C 0.364 3.636 14 N -0.663 5.663 15 C 0.656 3.344 16 O -0.517 6.517 17 N -0.733 5.733 18 C 0.147 3.853 19 C 0.063 3.937 20 O -0.405 6.405 21 C 0.060 3.940 22 C 0.069 3.931 23 H 0.061 0.939 24 C -0.143 4.143 25 C -0.149 4.149 26 C 0.032 3.968 27 O -0.398 6.398 28 N -0.507 5.507 29 H 0.268 0.732 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.415 0.585 34 H 0.403 0.597 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.408 -5.166 1.638 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.304 5.304 2 C -0.219 4.219 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.104 0.896 9 C 0.109 3.891 10 C -0.353 4.353 11 C -0.058 4.058 12 C -0.373 4.373 13 C 0.124 3.876 14 N -0.313 5.313 15 C 0.355 3.645 16 O -0.386 6.386 17 N -0.394 5.394 18 C 0.023 3.977 19 C -0.013 4.013 20 O -0.325 6.325 21 C -0.016 4.016 22 C 0.011 3.989 23 H 0.079 0.921 24 C -0.181 4.181 25 C -0.186 4.186 26 C -0.045 4.045 27 O -0.318 6.318 28 N -0.226 5.226 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.252 0.748 34 H 0.238 0.762 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.178 -3.291 1.682 25.448 hybrid contribution 0.260 -0.795 0.068 0.839 sum -24.919 -4.086 1.750 25.312 Atomic orbital electron populations 1.70584 1.07193 1.27816 1.24803 1.27098 0.96058 1.04105 0.94624 0.85310 0.79056 0.76793 0.79116 1.19016 1.19937 1.17916 1.19891 0.94407 0.90432 1.44938 0.89568 1.18930 0.87940 0.93510 0.88696 1.21807 0.99209 0.93793 1.20503 1.21022 0.93391 0.97382 0.93970 1.20914 0.95217 0.95478 1.25653 1.18866 0.84135 0.91158 0.93409 1.42428 1.03984 1.09054 1.75864 1.16739 0.82768 0.84896 0.80130 1.91364 1.64046 1.31531 1.51624 1.44969 1.03808 1.10099 1.80510 1.21125 0.90424 0.84795 1.01406 1.22743 0.91973 0.99673 0.86947 1.87995 1.24082 1.83543 1.36864 1.22896 0.81671 1.00001 0.97003 1.22907 0.93861 0.85334 0.96782 0.92117 1.22939 0.92861 0.97574 1.04695 1.23129 0.97574 0.95166 1.02763 1.23813 0.88229 0.96645 0.95766 1.89019 1.43876 1.23237 1.75619 1.68659 1.07243 1.25301 1.21405 0.92078 0.87655 0.84392 0.85185 0.74771 0.76221 0.93654 0.90833 0.89265 0.90957 0.89785 0.91917 0.88932 0.88657 0.88208 0.90043 0.91988 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.42 8.99 21.84 0.20 -41.23 16 2 C 0.01 0.38 5.50 85.29 0.47 0.85 16 3 Si 0.98 42.34 29.56 68.60 2.03 44.37 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 7 C -0.47 -27.61 9.14 23.47 0.21 -27.40 16 8 H 0.09 4.77 7.85 -2.91 -0.02 4.74 16 9 C 0.23 14.21 6.55 40.21 0.26 14.48 16 10 C -0.33 -17.39 9.83 22.87 0.22 -17.17 16 11 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 12 C -0.35 -15.72 9.95 22.72 0.23 -15.50 16 13 C 0.36 18.88 7.43 133.24 0.99 19.87 16 14 N -0.66 -28.37 5.39 -322.13 -1.74 -30.11 16 15 C 0.66 29.60 8.52 179.05 1.53 31.13 16 16 O -0.52 -29.05 12.11 -3.95 -0.05 -29.10 16 17 N -0.73 -24.30 5.51 -478.55 -2.64 -26.94 16 18 C 0.15 4.30 6.06 86.38 0.52 4.82 16 19 C 0.06 1.24 6.07 71.98 0.44 1.68 16 20 O -0.40 -9.51 10.28 -147.06 -1.51 -11.02 16 21 C 0.06 0.98 5.39 71.98 0.39 1.37 16 22 C 0.07 1.18 3.70 30.97 0.11 1.30 16 23 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 24 C -0.14 -1.35 6.64 31.59 0.21 -1.14 16 25 C -0.15 -1.34 7.16 31.90 0.23 -1.11 16 26 C 0.03 0.46 7.72 72.66 0.56 1.02 16 27 O -0.40 -8.96 11.19 -147.06 -1.65 -10.61 16 28 N -0.51 -30.80 5.74 -186.37 -1.07 -31.87 16 29 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 30 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 31 H 0.14 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.42 13.61 8.71 -92.71 -0.81 12.80 16 34 H 0.40 10.95 8.49 -92.71 -0.79 10.16 16 35 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 0.61 7.70 -2.39 -0.02 0.59 16 43 H 0.10 0.52 8.14 -2.39 -0.02 0.51 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -83.59 382.81 -0.41 -83.99 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.59 Total: 39.62 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.60 Total: 12.90 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -5.24 Total: -130.14 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -3.21 Total: -50.73 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -83.59 -0.41 -83.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881151624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.001 kcal (2) G-P(sol) polarization free energy of solvation -83.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds