Wall clock time and date at job start Tue Mar 31 2020 18:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47216 * 270.00324 * 3 2 1 5 5 H 1.48507 * 109.47159 * 29.99990 * 3 2 1 6 6 H 1.48501 * 109.47293 * 149.99777 * 3 2 1 7 7 C 1.37876 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99649 * 181.43708 * 7 2 1 9 9 C 1.50701 * 120.00378 * 1.43585 * 7 2 1 10 10 C 1.53007 * 115.54738 * 325.13137 * 9 7 2 11 11 N 1.46504 * 109.46614 * 305.45085 * 10 9 7 12 12 C 1.34782 * 119.99343 * 184.73858 * 11 10 9 13 13 O 1.21580 * 120.00266 * 5.03980 * 12 11 10 14 14 N 1.34772 * 119.99486 * 185.03729 * 12 11 10 15 15 C 1.48422 * 127.82053 * 174.55334 * 14 12 11 16 16 C 1.54395 * 104.48435 * 140.43211 * 15 14 12 17 17 H 1.09003 * 110.34189 * 142.81576 * 16 15 14 18 18 C 1.52996 * 110.34114 * 264.96779 * 16 15 14 19 19 N 1.46900 * 109.47213 * 292.12517 * 18 16 15 20 20 C 1.54281 * 105.05155 * 23.89424 * 16 15 14 21 21 H 1.09004 * 110.34203 * 241.07438 * 20 16 15 22 22 C 1.53003 * 110.34462 * 118.92487 * 20 16 15 23 23 F 1.39902 * 109.46778 * 59.99219 * 22 20 16 24 24 F 1.39900 * 109.47227 * 179.97438 * 22 20 16 25 25 F 1.39898 * 109.46754 * 300.00066 * 22 20 16 26 26 C 1.48144 * 127.84163 * 354.59665 * 14 12 11 27 27 C 1.52993 * 117.49688 * 110.79507 * 9 7 2 28 28 C 1.52996 * 117.49937 * 179.45777 * 9 7 2 29 29 H 0.97003 * 119.99593 * 5.00685 * 1 2 3 30 30 H 1.08994 * 109.46812 * 185.45483 * 10 9 7 31 31 H 1.08996 * 109.47204 * 65.45190 * 10 9 7 32 32 H 0.96995 * 120.00144 * 4.74313 * 11 10 9 33 33 H 1.08992 * 110.49497 * 21.67924 * 15 14 12 34 34 H 1.08996 * 110.44799 * 259.15866 * 15 14 12 35 35 H 1.09000 * 109.47067 * 172.12569 * 18 16 15 36 36 H 1.08995 * 109.47278 * 52.12688 * 18 16 15 37 37 H 1.00895 * 111.00152 * 56.04836 * 19 18 16 38 38 H 1.00903 * 111.00199 * 180.02562 * 19 18 16 39 39 H 1.08999 * 110.40919 * 100.79163 * 26 14 12 40 40 H 1.08997 * 110.40894 * 338.35612 * 26 14 12 41 41 H 1.09006 * 117.49839 * 215.00286 * 27 9 7 42 42 H 1.09000 * 117.50374 * 0.03157 * 27 9 7 43 43 H 1.08998 * 117.50121 * 359.97438 * 28 9 7 44 44 H 1.09002 * 117.49643 * 144.97718 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0843 -1.1942 0.0229 9 6 1.2514 -2.4990 -0.0338 10 6 -0.0762 -2.5142 0.7266 11 7 0.1486 -2.0876 2.1100 12 6 -0.8659 -2.1151 2.9969 13 8 -1.9426 -2.5790 2.6748 14 7 -0.6868 -1.6282 4.2408 15 6 -1.7028 -1.4697 5.3111 16 6 -0.9657 -1.8740 6.6061 17 1 -1.2833 -1.2424 7.4358 18 6 -1.2272 -3.3464 6.9293 19 7 -2.6384 -3.5239 7.2969 20 6 0.5301 -1.6489 6.3027 21 1 1.0787 -2.5873 6.3839 22 6 1.1158 -0.6072 7.2581 23 9 0.9799 -1.0552 8.5765 24 9 2.4712 -0.4178 6.9676 25 9 0.4318 0.6034 7.1042 26 6 0.5682 -1.1291 4.8494 27 6 1.3432 -3.3351 -1.3118 28 6 2.0737 -3.7891 -0.0456 29 1 -0.4850 0.8369 -0.0733 30 1 -0.4871 -3.5237 0.7199 31 1 -0.7781 -1.8329 0.2458 32 1 1.0275 -1.7855 2.3876 33 1 -2.5504 -2.1316 5.1338 34 1 -2.0347 -0.4332 5.3706 35 1 -0.5936 -3.6539 7.7612 36 1 -1.0000 -3.9562 6.0549 37 1 -3.2474 -3.1858 6.5670 38 1 -2.8365 -4.4888 7.5155 39 1 0.5900 -0.0394 4.8361 40 1 1.4329 -1.5339 4.3236 41 1 0.4577 -3.8962 -1.6108 42 1 1.9486 -2.9417 -2.1283 43 1 3.1594 -3.6941 -0.0296 44 1 1.6691 -4.6487 0.4888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891868572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:51 Heat of formation + Delta-G solvation = -149.370435 kcal Electronic energy + Delta-G solvation = -30935.151203 eV Core-core repulsion = 26280.363540 eV Total energy + Delta-G solvation = -4654.787662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.26030 -47.73713 -47.71525 -40.00228 -38.03589 -36.63159 -34.59363 -33.04295 -32.23289 -31.84180 -29.27777 -26.46260 -25.74664 -25.59433 -24.34686 -22.28488 -21.27626 -20.46735 -19.49067 -19.31980 -18.63076 -18.28223 -18.00458 -17.50150 -16.33858 -16.11301 -15.40886 -15.13570 -14.91437 -14.79236 -14.67023 -14.53307 -14.14879 -14.12677 -13.94184 -13.87745 -13.87015 -13.51264 -13.43606 -13.12932 -12.67575 -12.53624 -12.21629 -12.03620 -11.79643 -11.65282 -11.42048 -11.22493 -11.13388 -11.06427 -10.78426 -10.55540 -10.30048 -9.79236 -9.42434 -9.03575 -8.93925 -8.91207 -8.57435 -8.32323 -7.77302 -6.04509 -4.24600 2.49611 3.04300 3.18607 3.28016 3.28684 3.57227 3.58374 3.72161 3.98370 4.25259 4.28328 4.42120 4.51571 4.63118 4.72282 4.93455 4.98776 5.01495 5.18310 5.42718 5.45859 5.47234 5.60469 5.70394 5.74761 5.83669 5.98771 6.26200 6.31569 6.50629 6.58781 6.69627 6.85399 6.86808 7.03300 7.18492 7.22457 7.50891 7.61182 7.68680 7.94039 8.27220 8.69123 8.84780 9.35008 9.39054 10.84557 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.004225 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.358853 B = 6625.519839 C = 7818.162839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.182 3.818 11 N -0.696 5.696 12 C 0.726 3.274 13 O -0.603 6.603 14 N -0.643 5.643 15 C 0.131 3.869 16 C -0.095 4.095 17 H 0.102 0.898 18 C 0.071 3.929 19 N -0.850 5.850 20 C -0.149 4.149 21 H 0.126 0.874 22 C 0.461 3.539 23 F -0.181 7.181 24 F -0.180 7.180 25 F -0.178 7.178 26 C 0.113 3.887 27 C -0.197 4.197 28 C -0.212 4.212 29 H 0.262 0.738 30 H 0.021 0.979 31 H 0.112 0.888 32 H 0.395 0.605 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.344 0.656 38 H 0.344 0.656 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -3.272 15.137 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.534 4.534 8 H 0.079 0.921 9 C 0.035 3.965 10 C 0.059 3.941 11 N -0.347 5.347 12 C 0.428 3.572 13 O -0.482 6.482 14 N -0.383 5.383 15 C 0.006 3.994 16 C -0.115 4.115 17 H 0.120 0.880 18 C -0.059 4.059 19 N -0.381 5.381 20 C -0.170 4.170 21 H 0.144 0.856 22 C 0.407 3.593 23 F -0.163 7.163 24 F -0.161 7.161 25 F -0.160 7.160 26 C -0.012 4.012 27 C -0.236 4.236 28 C -0.249 4.249 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.129 0.871 32 H 0.229 0.771 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.778 -3.002 15.383 15.693 hybrid contribution 1.158 0.623 -0.644 1.464 sum 0.381 -2.380 14.739 14.935 Atomic orbital electron populations 1.69874 1.05679 1.26744 1.47965 1.24996 0.94841 0.99039 0.94093 0.86598 0.79816 0.83320 0.78401 1.20525 1.21130 1.19758 1.20513 0.92461 0.88543 1.51883 0.92111 1.19242 0.93157 0.89709 0.94406 1.20990 0.97904 0.96545 0.78671 1.44879 1.11081 1.68296 1.10411 1.15376 0.84748 0.78712 0.78355 1.90842 1.26271 1.53498 1.77625 1.47989 1.09457 1.68391 1.12489 1.22164 0.91970 1.01587 0.83631 1.22203 0.91279 0.98644 0.99375 0.87973 1.21764 0.90530 0.94140 0.99508 1.58769 1.04287 1.26220 1.48797 1.23497 0.99305 0.98606 0.95594 0.85622 1.20320 0.76234 0.82188 0.80572 1.93191 1.95576 1.89050 1.38457 1.93212 1.34017 1.95697 1.93209 1.93195 1.79552 1.47775 1.95427 1.22140 0.89774 0.99981 0.89309 1.22936 1.01369 1.06574 0.92699 1.22948 0.98081 1.00513 1.03378 0.92691 0.96128 0.87096 0.77059 0.89564 0.90930 0.90581 0.94495 0.84252 0.84383 0.90106 0.88837 0.91439 0.90190 0.90666 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.54 10.20 55.43 0.57 -21.98 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.50 -12.25 8.32 -34.44 -0.29 -12.54 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.04 0.82 2.06 -155.66 -0.32 0.50 16 10 C 0.18 4.25 4.63 -4.04 -0.02 4.24 16 11 N -0.70 -14.70 5.14 -65.22 -0.34 -15.04 16 12 C 0.73 14.92 8.56 -86.92 -0.74 14.18 16 13 O -0.60 -14.39 16.58 5.30 0.09 -14.30 16 14 N -0.64 -10.17 3.32 -174.80 -0.58 -10.75 16 15 C 0.13 1.68 6.49 -2.25 -0.01 1.67 16 16 C -0.10 -0.97 2.59 -89.22 -0.23 -1.20 16 17 H 0.10 1.01 7.40 -51.93 -0.38 0.63 16 18 C 0.07 0.68 6.00 -3.83 -0.02 0.66 16 19 N -0.85 -7.69 9.62 -10.37 -0.10 -7.79 16 20 C -0.15 -1.51 2.72 -89.22 -0.24 -1.75 16 21 H 0.13 1.09 7.71 -51.93 -0.40 0.68 16 22 C 0.46 4.89 2.53 37.16 0.09 4.99 16 23 F -0.18 -1.92 16.92 2.25 0.04 -1.88 16 24 F -0.18 -2.05 17.17 2.25 0.04 -2.01 16 25 F -0.18 -2.08 16.05 2.25 0.04 -2.04 16 26 C 0.11 1.45 6.21 -2.41 -0.01 1.43 16 27 C -0.20 -4.22 9.96 -26.70 -0.27 -4.49 16 28 C -0.21 -4.32 9.93 -26.69 -0.26 -4.58 16 29 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 30 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 31 H 0.11 2.96 5.90 -51.93 -0.31 2.65 16 32 H 0.40 7.99 6.41 -40.82 -0.26 7.73 16 33 H 0.09 1.16 6.14 -51.93 -0.32 0.84 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.34 3.18 7.35 -39.29 -0.29 2.89 16 38 H 0.34 2.59 9.08 -39.29 -0.36 2.24 16 39 H 0.08 1.06 7.22 -51.93 -0.37 0.68 16 40 H 0.09 1.17 6.98 -51.93 -0.36 0.81 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -28.38 366.51 -8.15 -36.53 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.98 Total: 14.23 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -2.43 Total: 4.87 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.45 Total: -55.56 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.11 Total: -5.94 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.38 -8.15 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891868572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.840 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds