Wall clock time and date at job start Tue Mar 31 2020 18:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48495 * 109.47216 * 270.00324 * 3 2 1 5 5 H 1.48507 * 109.47159 * 29.99990 * 3 2 1 6 6 H 1.48501 * 109.47293 * 149.99777 * 3 2 1 7 7 C 1.37876 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99649 * 181.43708 * 7 2 1 9 9 C 1.50701 * 120.00378 * 1.43585 * 7 2 1 10 10 C 1.53007 * 115.54738 * 325.13137 * 9 7 2 11 11 N 1.46504 * 109.46614 * 305.45085 * 10 9 7 12 12 C 1.34782 * 119.99343 * 184.73858 * 11 10 9 13 13 O 1.21580 * 120.00266 * 5.03980 * 12 11 10 14 14 N 1.34772 * 119.99486 * 185.03729 * 12 11 10 15 15 C 1.48422 * 127.82053 * 174.55334 * 14 12 11 16 16 C 1.54395 * 104.48435 * 140.43211 * 15 14 12 17 17 H 1.09003 * 110.34189 * 142.81576 * 16 15 14 18 18 C 1.52996 * 110.34114 * 264.96779 * 16 15 14 19 19 N 1.46900 * 109.47213 * 292.12517 * 18 16 15 20 20 C 1.54281 * 105.05155 * 23.89424 * 16 15 14 21 21 H 1.09004 * 110.34203 * 241.07438 * 20 16 15 22 22 C 1.53003 * 110.34462 * 118.92487 * 20 16 15 23 23 F 1.39902 * 109.46778 * 59.99219 * 22 20 16 24 24 F 1.39900 * 109.47227 * 179.97438 * 22 20 16 25 25 F 1.39898 * 109.46754 * 300.00066 * 22 20 16 26 26 C 1.48144 * 127.84163 * 354.59665 * 14 12 11 27 27 C 1.52993 * 117.49688 * 110.79507 * 9 7 2 28 28 C 1.52996 * 117.49937 * 179.45777 * 9 7 2 29 29 H 0.97003 * 119.99593 * 5.00685 * 1 2 3 30 30 H 1.08994 * 109.46812 * 185.45483 * 10 9 7 31 31 H 1.08996 * 109.47204 * 65.45190 * 10 9 7 32 32 H 0.96995 * 120.00144 * 4.74313 * 11 10 9 33 33 H 1.08992 * 110.49497 * 21.67924 * 15 14 12 34 34 H 1.08996 * 110.44799 * 259.15866 * 15 14 12 35 35 H 1.09000 * 109.47067 * 172.12569 * 18 16 15 36 36 H 1.08995 * 109.47278 * 52.12688 * 18 16 15 37 37 H 1.00895 * 111.00152 * 56.04836 * 19 18 16 38 38 H 1.00903 * 111.00199 * 180.02562 * 19 18 16 39 39 H 1.08999 * 110.40919 * 100.79163 * 26 14 12 40 40 H 1.08997 * 110.40894 * 338.35612 * 26 14 12 41 41 H 1.09006 * 117.49839 * 215.00286 * 27 9 7 42 42 H 1.09000 * 117.50374 * 0.03157 * 27 9 7 43 43 H 1.08998 * 117.50121 * 359.97438 * 28 9 7 44 44 H 1.09002 * 117.49643 * 144.97718 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0843 -1.1942 0.0229 9 6 1.2514 -2.4990 -0.0338 10 6 -0.0762 -2.5142 0.7266 11 7 0.1486 -2.0876 2.1100 12 6 -0.8659 -2.1151 2.9969 13 8 -1.9426 -2.5790 2.6748 14 7 -0.6868 -1.6282 4.2408 15 6 -1.7028 -1.4697 5.3111 16 6 -0.9657 -1.8740 6.6061 17 1 -1.2833 -1.2424 7.4358 18 6 -1.2272 -3.3464 6.9293 19 7 -2.6384 -3.5239 7.2969 20 6 0.5301 -1.6489 6.3027 21 1 1.0787 -2.5873 6.3839 22 6 1.1158 -0.6072 7.2581 23 9 0.9799 -1.0552 8.5765 24 9 2.4712 -0.4178 6.9676 25 9 0.4318 0.6034 7.1042 26 6 0.5682 -1.1291 4.8494 27 6 1.3432 -3.3351 -1.3118 28 6 2.0737 -3.7891 -0.0456 29 1 -0.4850 0.8369 -0.0733 30 1 -0.4871 -3.5237 0.7199 31 1 -0.7781 -1.8329 0.2458 32 1 1.0275 -1.7855 2.3876 33 1 -2.5504 -2.1316 5.1338 34 1 -2.0347 -0.4332 5.3706 35 1 -0.5936 -3.6539 7.7612 36 1 -1.0000 -3.9562 6.0549 37 1 -3.2474 -3.1858 6.5670 38 1 -2.8365 -4.4888 7.5155 39 1 0.5900 -0.0394 4.8361 40 1 1.4329 -1.5339 4.3236 41 1 0.4577 -3.8962 -1.6108 42 1 1.9486 -2.9417 -2.1283 43 1 3.1594 -3.6941 -0.0296 44 1 1.6691 -4.6487 0.4888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891868572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:50 Heat of formation + Delta-G solvation = -167.319003 kcal Electronic energy + Delta-G solvation = -30935.929511 eV Core-core repulsion = 26280.363540 eV Total energy + Delta-G solvation = -4655.565971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.12984 -48.60294 -48.59203 -41.30618 -39.43723 -38.31830 -35.57925 -34.68542 -34.09852 -32.96218 -30.26729 -28.02027 -27.39129 -26.67932 -25.68552 -23.25028 -22.94037 -21.41025 -21.11535 -20.87531 -19.51943 -19.39535 -19.14849 -18.57343 -17.98118 -17.17585 -16.84009 -16.73329 -16.30597 -15.85227 -15.63617 -15.56260 -15.43800 -15.16153 -15.01489 -14.90230 -14.75709 -14.71257 -14.63640 -14.59152 -14.33006 -13.66268 -13.43046 -13.31652 -13.16586 -13.04263 -12.92982 -12.59020 -12.54690 -12.28834 -12.14814 -12.03548 -11.93860 -11.54612 -11.16975 -10.88263 -10.68031 -10.17493 -10.01933 -9.67275 -9.39198 -7.93602 -6.19113 1.42181 1.47647 1.50738 1.54190 1.79069 2.28269 2.42106 2.69230 2.72516 2.91412 3.01014 3.31297 3.44219 3.56249 3.66201 3.69106 3.80949 4.02291 4.11486 4.27747 4.30547 4.42873 4.54628 4.60023 4.67662 4.69795 4.77462 4.81627 4.82742 4.88755 4.97020 5.10657 5.20787 5.33514 5.53908 5.61519 5.91704 5.99042 6.14122 6.16527 6.39164 6.50717 6.82243 7.20910 7.46082 7.73900 8.92569 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011880 B = 0.004225 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.358853 B = 6625.519839 C = 7818.162839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.039 3.961 3 Si 0.945 3.055 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.008 3.992 10 C 0.196 3.804 11 N -0.695 5.695 12 C 0.722 3.278 13 O -0.642 6.642 14 N -0.642 5.642 15 C 0.125 3.875 16 C -0.082 4.082 17 H 0.112 0.888 18 C 0.076 3.924 19 N -0.852 5.852 20 C -0.136 4.136 21 H 0.148 0.852 22 C 0.467 3.533 23 F -0.178 7.178 24 F -0.183 7.183 25 F -0.185 7.185 26 C 0.107 3.893 27 C -0.198 4.198 28 C -0.186 4.186 29 H 0.256 0.744 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.399 0.601 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.022 0.978 37 H 0.341 0.659 38 H 0.353 0.647 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -3.599 16.741 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.007 3.993 10 C 0.071 3.929 11 N -0.346 5.346 12 C 0.424 3.576 13 O -0.525 6.525 14 N -0.380 5.380 15 C 0.002 3.998 16 C -0.102 4.102 17 H 0.130 0.870 18 C -0.055 4.055 19 N -0.383 5.383 20 C -0.157 4.157 21 H 0.166 0.834 22 C 0.412 3.588 23 F -0.159 7.159 24 F -0.165 7.165 25 F -0.166 7.166 26 C -0.016 4.016 27 C -0.237 4.237 28 C -0.223 4.223 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.040 0.960 37 H 0.155 0.845 38 H 0.166 0.834 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.583 -3.324 17.039 17.370 hybrid contribution 0.732 0.715 -1.123 1.519 sum 1.315 -2.609 15.916 16.182 Atomic orbital electron populations 1.70058 1.06757 1.26690 1.49188 1.25541 0.95285 1.01429 0.94057 0.85758 0.79012 0.80141 0.77959 1.20901 1.21741 1.18750 1.20685 0.92394 0.89388 1.51388 0.92299 1.19282 0.93596 0.90480 0.95936 1.20614 0.97428 0.95115 0.79700 1.44715 1.11455 1.68566 1.09830 1.15490 0.83934 0.78634 0.79511 1.90802 1.27619 1.55253 1.78875 1.47892 1.11577 1.67025 1.11502 1.22374 0.91650 1.01808 0.83952 1.22119 0.90809 0.99406 0.97890 0.86982 1.21738 0.91122 0.93157 0.99514 1.58794 1.03978 1.27020 1.48512 1.23415 0.99557 0.99258 0.93497 0.83426 1.20260 0.75969 0.81862 0.80674 1.93202 1.95541 1.88964 1.38186 1.93210 1.34315 1.95702 1.93251 1.93189 1.79674 1.48283 1.95469 1.22292 0.88487 0.99998 0.90865 1.22960 1.01932 1.06193 0.92616 1.22932 0.98299 0.99143 1.01915 0.93405 0.96732 0.90661 0.76597 0.90316 0.90523 0.88917 0.95952 0.84528 0.83367 0.90231 0.88450 0.90689 0.90341 0.89693 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.10 10.20 21.45 0.22 -46.89 16 2 C 0.04 1.91 5.29 84.65 0.45 2.36 16 3 Si 0.94 40.19 29.54 68.60 2.03 42.21 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.50 -24.44 8.32 25.60 0.21 -24.23 16 8 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16 9 C 0.01 0.36 2.06 -52.93 -0.11 0.25 16 10 C 0.20 9.29 4.63 86.38 0.40 9.69 16 11 N -0.69 -29.59 5.14 -478.53 -2.46 -32.05 16 12 C 0.72 30.06 8.56 179.05 1.53 31.59 16 13 O -0.64 -31.48 16.58 -3.97 -0.07 -31.54 16 14 N -0.64 -20.03 3.32 -825.20 -2.74 -22.77 16 15 C 0.13 3.14 6.49 86.48 0.56 3.70 16 16 C -0.08 -1.52 2.59 -9.89 -0.03 -1.54 16 17 H 0.11 1.93 7.40 -2.39 -0.02 1.91 16 18 C 0.08 1.29 6.00 86.30 0.52 1.80 16 19 N -0.85 -14.01 9.62 -186.73 -1.80 -15.81 16 20 C -0.14 -2.45 2.72 -9.89 -0.03 -2.48 16 21 H 0.15 2.08 7.71 -2.38 -0.02 2.06 16 22 C 0.47 8.78 2.53 71.98 0.18 8.96 16 23 F -0.18 -3.26 16.92 44.97 0.76 -2.50 16 24 F -0.18 -3.77 17.17 44.97 0.77 -2.99 16 25 F -0.18 -3.95 16.05 44.97 0.72 -3.23 16 26 C 0.11 2.62 6.21 86.53 0.54 3.15 16 27 C -0.20 -8.31 9.96 30.62 0.30 -8.01 16 28 C -0.19 -7.22 9.93 30.62 0.30 -6.92 16 29 H 0.26 13.41 8.32 -92.71 -0.77 12.64 16 30 H 0.01 0.69 8.05 -2.39 -0.02 0.67 16 31 H 0.08 4.16 5.90 -2.39 -0.01 4.14 16 32 H 0.40 16.06 6.41 -92.71 -0.59 15.47 16 33 H 0.08 2.11 6.14 -2.39 -0.01 2.10 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.34 6.00 7.35 -89.70 -0.66 5.34 16 38 H 0.35 4.74 9.08 -89.69 -0.81 3.93 16 39 H 0.08 1.99 7.22 -2.39 -0.02 1.97 16 40 H 0.10 2.31 6.98 -2.39 -0.02 2.29 16 41 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 42 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -60.58 366.51 1.28 -59.30 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.99 Total: 37.92 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 4.84 Total: 18.33 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.78 Total: -117.51 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.07 Total: -31.54 kcal Atomic # 9 Polarization: -10.97 SS G_CDS: 2.26 Total: -8.72 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -60.58 1.28 -59.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891868572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.018 kcal (2) G-P(sol) polarization free energy of solvation -60.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds