Wall clock time and date at job start Tue Mar 31 2020 18:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48506 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47010 * 299.99706 * 3 2 1 6 6 H 1.48494 * 109.47220 * 60.00001 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00155 * 172.17529 * 7 2 1 9 9 C 1.50696 * 120.00360 * 352.16648 * 7 2 1 10 10 C 1.53001 * 115.55271 * 294.79603 * 9 7 2 11 11 N 1.46500 * 109.46514 * 275.59241 * 10 9 7 12 12 C 1.34781 * 119.99756 * 185.00591 * 11 10 9 13 13 O 1.21583 * 119.99855 * 4.92439 * 12 11 10 14 14 N 1.34772 * 120.00029 * 184.92207 * 12 11 10 15 15 C 1.47487 * 127.03199 * 174.99025 * 14 12 11 16 16 C 1.54012 * 107.08483 * 205.40136 * 15 14 12 17 17 H 1.08998 * 110.32492 * 117.58384 * 16 15 14 18 18 C 1.52995 * 110.32888 * 239.80423 * 16 15 14 19 19 N 1.46899 * 109.47320 * 290.62414 * 18 16 15 20 20 C 1.54624 * 105.04052 * 358.69813 * 16 15 14 21 21 H 1.09002 * 110.74031 * 96.66891 * 20 16 15 22 22 C 1.53001 * 110.73394 * 219.81106 * 20 16 15 23 23 F 1.39897 * 109.47303 * 60.00395 * 22 20 16 24 24 F 1.39900 * 109.47196 * 299.99799 * 22 20 16 25 25 F 1.39901 * 109.46874 * 180.02562 * 22 20 16 26 26 C 1.48117 * 127.03453 * 354.94079 * 14 12 11 27 27 C 1.53006 * 117.51452 * 80.49170 * 9 7 2 28 28 C 1.52998 * 60.00161 * 107.48314 * 27 9 7 29 29 H 0.96995 * 119.99901 * 5.00420 * 1 2 3 30 30 H 1.08998 * 109.46968 * 155.59677 * 10 9 7 31 31 H 1.08994 * 109.46823 * 35.59089 * 10 9 7 32 32 H 0.96998 * 120.00146 * 5.00587 * 11 10 9 33 33 H 1.08998 * 109.91426 * 86.04745 * 15 14 12 34 34 H 1.08995 * 109.91831 * 324.76494 * 15 14 12 35 35 H 1.09009 * 109.46997 * 50.62329 * 18 16 15 36 36 H 1.09001 * 109.47270 * 170.61555 * 18 16 15 37 37 H 1.00898 * 111.00138 * 56.03800 * 19 18 16 38 38 H 1.00900 * 110.99890 * 180.02562 * 19 18 16 39 39 H 1.08996 * 110.66190 * 22.30793 * 26 14 12 40 40 H 1.08999 * 110.65821 * 259.19089 * 26 14 12 41 41 H 1.09000 * 117.49933 * 214.97155 * 27 9 7 42 42 H 1.09000 * 117.49827 * 359.97438 * 27 9 7 43 43 H 1.09001 * 117.49658 * 252.51358 * 28 27 9 44 44 H 1.09001 * 117.49919 * 107.48547 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0770 -1.1984 -0.1279 9 6 1.2616 -2.4931 0.1768 10 6 0.5851 -2.6865 1.5354 11 7 1.5582 -3.2154 2.4944 12 6 1.1618 -3.5612 3.7353 13 8 -0.0168 -3.5190 4.0308 14 7 2.0719 -3.9537 4.6486 15 6 1.8274 -4.2651 6.0693 16 6 3.1524 -4.0305 6.8185 17 1 3.0344 -3.2376 7.5571 18 6 3.6172 -5.3224 7.4935 19 7 2.7127 -5.6475 8.6043 20 6 4.1601 -3.6020 5.7269 21 1 4.2424 -2.5160 5.6823 22 6 5.5298 -4.2374 5.9746 23 9 5.4079 -5.6309 5.9548 24 9 6.0144 -3.8293 7.2220 25 9 6.4196 -3.8324 4.9739 26 6 3.5221 -4.1616 4.4305 27 6 0.5619 -3.0805 -1.0507 28 6 1.8351 -3.7344 -0.5099 29 1 -0.4850 0.8368 -0.0733 30 1 -0.2423 -3.3885 1.4327 31 1 0.2069 -1.7286 1.8925 32 1 2.4877 -3.3169 2.2362 33 1 1.5211 -5.3059 6.1739 34 1 1.0549 -3.6065 6.4661 35 1 3.6078 -6.1354 6.7674 36 1 4.6292 -5.1888 7.8759 37 1 1.7576 -5.7129 8.2857 38 1 2.9990 -6.4972 9.0670 39 1 3.8644 -3.6013 3.5605 40 1 3.7460 -5.2224 4.3186 41 1 -0.3802 -3.6046 -0.8902 42 1 0.6385 -2.5270 -1.9866 43 1 2.7495 -3.6112 -1.0902 44 1 1.7305 -4.6886 0.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891868575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:00 Heat of formation + Delta-G solvation = -142.234171 kcal Electronic energy + Delta-G solvation = -30566.411296 eV Core-core repulsion = 25911.933085 eV Total energy + Delta-G solvation = -4654.478211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.54470 -47.96574 -47.89865 -40.24698 -38.28037 -36.70084 -34.75643 -33.29241 -32.10681 -32.03052 -29.49986 -26.72016 -25.87047 -25.48528 -24.43944 -22.81636 -21.29871 -20.60652 -19.76074 -19.42631 -18.87594 -18.56943 -18.00470 -17.40993 -16.31085 -16.11687 -15.99609 -15.53742 -15.23303 -14.82741 -14.69984 -14.56342 -14.37597 -14.32986 -14.10342 -14.04525 -13.93778 -13.50513 -13.47028 -13.25093 -13.07558 -12.70365 -12.45897 -12.12442 -11.76719 -11.66453 -11.57559 -11.37017 -11.07615 -11.02533 -10.95112 -10.54611 -10.34270 -9.88370 -9.52683 -9.09396 -9.02926 -8.79938 -8.63942 -8.26456 -8.08527 -6.11778 -4.18647 2.32418 2.80731 3.23023 3.32569 3.34273 3.38427 3.42202 3.54357 3.72434 4.06718 4.23505 4.32246 4.32798 4.44362 4.59648 4.80421 4.82683 4.99668 5.10491 5.22715 5.30730 5.35544 5.36316 5.46979 5.62329 5.80515 5.94960 6.11202 6.27400 6.42511 6.58338 6.62522 6.72741 6.81917 7.01201 7.06026 7.23504 7.29976 7.44027 7.47062 7.80864 8.30731 8.42568 8.80953 9.02647 9.46621 10.95955 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.003389 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.745011 B = 8259.912559 C = 8925.379658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.034 3.966 10 C 0.180 3.820 11 N -0.722 5.722 12 C 0.722 3.278 13 O -0.590 6.590 14 N -0.642 5.642 15 C 0.134 3.866 16 C -0.094 4.094 17 H 0.108 0.892 18 C 0.048 3.952 19 N -0.849 5.849 20 C -0.150 4.150 21 H 0.133 0.867 22 C 0.464 3.536 23 F -0.179 7.179 24 F -0.178 7.178 25 F -0.178 7.178 26 C 0.110 3.890 27 C -0.163 4.163 28 C -0.208 4.208 29 H 0.262 0.738 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.393 0.607 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.342 0.658 38 H 0.345 0.655 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.056 -10.954 13.928 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.033 3.967 10 C 0.058 3.942 11 N -0.375 5.375 12 C 0.424 3.576 13 O -0.468 6.468 14 N -0.382 5.382 15 C 0.010 3.990 16 C -0.113 4.113 17 H 0.126 0.874 18 C -0.083 4.083 19 N -0.380 5.380 20 C -0.171 4.171 21 H 0.151 0.849 22 C 0.409 3.591 23 F -0.160 7.160 24 F -0.159 7.159 25 F -0.159 7.159 26 C -0.015 4.015 27 C -0.202 4.202 28 C -0.245 4.245 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.227 0.773 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.151 -10.041 14.398 19.795 hybrid contribution 0.970 -0.049 -0.726 1.213 sum 10.121 -10.089 13.672 19.777 Atomic orbital electron populations 1.69970 1.05906 1.26969 1.48079 1.24985 0.94795 0.99002 0.94343 0.86574 0.80182 0.83780 0.77710 1.19696 1.20991 1.20883 1.20455 0.93219 0.88704 1.51373 0.92060 1.19084 0.97758 0.91479 0.88369 1.20950 0.88342 0.97726 0.87229 1.45372 1.13459 1.67631 1.11021 1.15477 0.83696 0.77987 0.80463 1.90906 1.14946 1.61451 1.79509 1.47767 1.06820 1.73535 1.10049 1.21812 0.96326 1.00975 0.79838 1.22208 0.93527 0.99640 0.95966 0.87351 1.22527 0.97592 0.95479 0.92672 1.58688 1.06349 1.42673 1.30253 1.23699 0.89781 1.04040 0.99583 0.84886 1.20260 0.88093 0.76635 0.74111 1.93166 1.95940 1.30826 1.96098 1.93175 1.89745 1.90172 1.42794 1.93225 1.71303 1.90258 1.61133 1.22365 0.81828 1.01369 0.95912 1.22710 0.93360 1.03550 1.00555 1.22882 0.97863 0.96906 1.06892 0.92765 0.94125 0.90290 0.77286 0.91916 0.89675 0.93592 0.89924 0.84484 0.84278 0.88596 0.89963 0.91603 0.89935 0.90374 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.99 12.60 55.43 0.70 -23.29 16 2 C 0.07 1.91 5.22 -17.82 -0.09 1.82 16 3 Si 0.89 20.34 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.50 -12.72 8.82 -34.44 -0.30 -13.02 16 8 H 0.06 1.54 7.83 -52.48 -0.41 1.13 16 9 C 0.03 0.78 1.32 -155.66 -0.21 0.58 16 10 C 0.18 4.12 5.53 -4.04 -0.02 4.09 16 11 N -0.72 -13.78 5.43 -65.23 -0.35 -14.13 16 12 C 0.72 13.57 8.53 -86.92 -0.74 12.83 16 13 O -0.59 -13.43 16.70 5.29 0.09 -13.35 16 14 N -0.64 -8.87 3.29 -175.48 -0.58 -9.45 16 15 C 0.13 1.50 6.11 -2.97 -0.02 1.49 16 16 C -0.09 -0.82 3.02 -89.24 -0.27 -1.09 16 17 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 18 C 0.05 0.38 4.46 -3.83 -0.02 0.37 16 19 N -0.85 -6.24 9.62 -10.37 -0.10 -6.34 16 20 C -0.15 -1.34 3.06 -88.74 -0.27 -1.61 16 21 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 22 C 0.46 4.17 2.40 37.16 0.09 4.26 16 23 F -0.18 -1.59 12.78 2.25 0.03 -1.57 16 24 F -0.18 -1.67 15.47 2.25 0.03 -1.64 16 25 F -0.18 -1.79 17.23 2.25 0.04 -1.75 16 26 C 0.11 1.15 6.31 -2.13 -0.01 1.14 16 27 C -0.16 -3.63 9.88 -26.73 -0.26 -3.89 16 28 C -0.21 -4.16 9.78 -26.73 -0.26 -4.42 16 29 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 30 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 31 H 0.08 2.08 7.26 -51.93 -0.38 1.71 16 32 H 0.39 6.68 6.72 -40.82 -0.27 6.41 16 33 H 0.06 0.65 7.11 -51.93 -0.37 0.28 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.63 16 35 H 0.05 0.37 6.84 -51.92 -0.36 0.02 16 36 H 0.08 0.70 5.16 -51.93 -0.27 0.44 16 37 H 0.34 2.34 7.92 -39.29 -0.31 2.03 16 38 H 0.34 2.01 9.08 -39.29 -0.36 1.66 16 39 H 0.10 1.00 6.75 -51.93 -0.35 0.65 16 40 H 0.08 0.77 7.31 -51.93 -0.38 0.40 16 41 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 42 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -30.01 363.44 -8.03 -38.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.95 Total: 10.15 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.39 Total: 2.53 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.33 Total: -53.21 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.35 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.10 Total: -4.95 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.01 -8.03 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891868575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.191 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds