Wall clock time and date at job start Tue Mar 31 2020 18:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00024 * 2 1 4 4 H 1.48506 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47010 * 299.99706 * 3 2 1 6 6 H 1.48494 * 109.47220 * 60.00001 * 3 2 1 7 7 C 1.37877 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00155 * 172.17529 * 7 2 1 9 9 C 1.50696 * 120.00360 * 352.16648 * 7 2 1 10 10 C 1.53001 * 115.55271 * 294.79603 * 9 7 2 11 11 N 1.46500 * 109.46514 * 275.59241 * 10 9 7 12 12 C 1.34781 * 119.99756 * 185.00591 * 11 10 9 13 13 O 1.21583 * 119.99855 * 4.92439 * 12 11 10 14 14 N 1.34772 * 120.00029 * 184.92207 * 12 11 10 15 15 C 1.47487 * 127.03199 * 174.99025 * 14 12 11 16 16 C 1.54012 * 107.08483 * 205.40136 * 15 14 12 17 17 H 1.08998 * 110.32492 * 117.58384 * 16 15 14 18 18 C 1.52995 * 110.32888 * 239.80423 * 16 15 14 19 19 N 1.46899 * 109.47320 * 290.62414 * 18 16 15 20 20 C 1.54624 * 105.04052 * 358.69813 * 16 15 14 21 21 H 1.09002 * 110.74031 * 96.66891 * 20 16 15 22 22 C 1.53001 * 110.73394 * 219.81106 * 20 16 15 23 23 F 1.39897 * 109.47303 * 60.00395 * 22 20 16 24 24 F 1.39900 * 109.47196 * 299.99799 * 22 20 16 25 25 F 1.39901 * 109.46874 * 180.02562 * 22 20 16 26 26 C 1.48117 * 127.03453 * 354.94079 * 14 12 11 27 27 C 1.53006 * 117.51452 * 80.49170 * 9 7 2 28 28 C 1.52998 * 60.00161 * 107.48314 * 27 9 7 29 29 H 0.96995 * 119.99901 * 5.00420 * 1 2 3 30 30 H 1.08998 * 109.46968 * 155.59677 * 10 9 7 31 31 H 1.08994 * 109.46823 * 35.59089 * 10 9 7 32 32 H 0.96998 * 120.00146 * 5.00587 * 11 10 9 33 33 H 1.08998 * 109.91426 * 86.04745 * 15 14 12 34 34 H 1.08995 * 109.91831 * 324.76494 * 15 14 12 35 35 H 1.09009 * 109.46997 * 50.62329 * 18 16 15 36 36 H 1.09001 * 109.47270 * 170.61555 * 18 16 15 37 37 H 1.00898 * 111.00138 * 56.03800 * 19 18 16 38 38 H 1.00900 * 110.99890 * 180.02562 * 19 18 16 39 39 H 1.08996 * 110.66190 * 22.30793 * 26 14 12 40 40 H 1.08999 * 110.65821 * 259.19089 * 26 14 12 41 41 H 1.09000 * 117.49933 * 214.97155 * 27 9 7 42 42 H 1.09000 * 117.49827 * 359.97438 * 27 9 7 43 43 H 1.09001 * 117.49658 * 252.51358 * 28 27 9 44 44 H 1.09001 * 117.49919 * 107.48547 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0770 -1.1984 -0.1279 9 6 1.2616 -2.4931 0.1768 10 6 0.5851 -2.6865 1.5354 11 7 1.5582 -3.2154 2.4944 12 6 1.1618 -3.5612 3.7353 13 8 -0.0168 -3.5190 4.0308 14 7 2.0719 -3.9537 4.6486 15 6 1.8274 -4.2651 6.0693 16 6 3.1524 -4.0305 6.8185 17 1 3.0344 -3.2376 7.5571 18 6 3.6172 -5.3224 7.4935 19 7 2.7127 -5.6475 8.6043 20 6 4.1601 -3.6020 5.7269 21 1 4.2424 -2.5160 5.6823 22 6 5.5298 -4.2374 5.9746 23 9 5.4079 -5.6309 5.9548 24 9 6.0144 -3.8293 7.2220 25 9 6.4196 -3.8324 4.9739 26 6 3.5221 -4.1616 4.4305 27 6 0.5619 -3.0805 -1.0507 28 6 1.8351 -3.7344 -0.5099 29 1 -0.4850 0.8368 -0.0733 30 1 -0.2423 -3.3885 1.4327 31 1 0.2069 -1.7286 1.8925 32 1 2.4877 -3.3169 2.2362 33 1 1.5211 -5.3059 6.1739 34 1 1.0549 -3.6065 6.4661 35 1 3.6078 -6.1354 6.7674 36 1 4.6292 -5.1888 7.8759 37 1 1.7576 -5.7129 8.2857 38 1 2.9990 -6.4972 9.0670 39 1 3.8644 -3.6013 3.5605 40 1 3.7460 -5.2224 4.3186 41 1 -0.3802 -3.6046 -0.8902 42 1 0.6385 -2.5270 -1.9866 43 1 2.7495 -3.6112 -1.0902 44 1 1.7305 -4.6886 0.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891868575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:59 Heat of formation + Delta-G solvation = -162.531668 kcal Electronic energy + Delta-G solvation = -30567.291461 eV Core-core repulsion = 25911.933085 eV Total energy + Delta-G solvation = -4655.358376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.27361 -48.69530 -48.63402 -41.45151 -39.54211 -38.38469 -35.64561 -34.84250 -34.04045 -33.00570 -30.37362 -28.26382 -27.33309 -26.62214 -25.62820 -23.69235 -22.98187 -21.43648 -21.19641 -21.03347 -19.67254 -19.53915 -19.11051 -18.23415 -17.97076 -17.28149 -16.83718 -16.71676 -16.48948 -16.43108 -15.72681 -15.59264 -15.38193 -15.28444 -15.12737 -14.98391 -14.87389 -14.77434 -14.62003 -14.33020 -14.10669 -13.87567 -13.59068 -13.48209 -13.32892 -12.92476 -12.91182 -12.82953 -12.45708 -12.32220 -12.14336 -12.05206 -11.82772 -11.53328 -11.28206 -10.95726 -10.51620 -10.20437 -10.07253 -9.61308 -9.56246 -8.10459 -6.21623 1.38090 1.41375 1.45702 1.54494 1.75334 2.09076 2.42583 2.60896 2.67131 2.93318 3.06315 3.17599 3.35796 3.49306 3.57307 3.57801 3.90705 4.04218 4.07582 4.21519 4.25597 4.38304 4.54797 4.56945 4.62535 4.65626 4.66807 4.77542 4.78197 4.95595 4.98699 5.05327 5.16443 5.26258 5.56406 5.58302 5.67944 5.82465 5.99888 6.17724 6.37275 6.56015 6.83202 7.00259 7.46309 7.55508 8.97229 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.003389 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.745011 B = 8259.912559 C = 8925.379658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.948 3.052 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.010 3.990 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.719 3.281 13 O -0.636 6.636 14 N -0.637 5.637 15 C 0.132 3.868 16 C -0.082 4.082 17 H 0.113 0.887 18 C 0.053 3.947 19 N -0.855 5.855 20 C -0.143 4.143 21 H 0.140 0.860 22 C 0.471 3.529 23 F -0.176 7.176 24 F -0.178 7.178 25 F -0.183 7.183 26 C 0.105 3.895 27 C -0.175 4.175 28 C -0.171 4.171 29 H 0.260 0.740 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.405 0.595 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.345 0.655 38 H 0.354 0.646 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 -11.973 14.686 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.009 3.991 10 C 0.076 3.924 11 N -0.370 5.370 12 C 0.421 3.579 13 O -0.518 6.518 14 N -0.375 5.375 15 C 0.009 3.991 16 C -0.102 4.102 17 H 0.131 0.869 18 C -0.078 4.078 19 N -0.386 5.386 20 C -0.165 4.165 21 H 0.158 0.842 22 C 0.416 3.584 23 F -0.158 7.158 24 F -0.159 7.159 25 F -0.164 7.164 26 C -0.018 4.018 27 C -0.213 4.213 28 C -0.208 4.208 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.241 0.759 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.501 -11.093 15.184 22.043 hybrid contribution 0.286 0.205 -0.909 0.975 sum 11.786 -10.888 14.275 21.477 Atomic orbital electron populations 1.70092 1.07291 1.27363 1.49683 1.25678 0.95398 1.02030 0.94412 0.85663 0.79576 0.80182 0.77171 1.18469 1.21028 1.21435 1.20758 0.93421 0.89754 1.50235 0.91857 1.19063 0.99131 0.92366 0.88572 1.20410 0.88782 0.95332 0.87873 1.45079 1.13350 1.67659 1.10921 1.15565 0.83725 0.77837 0.80740 1.90870 1.17296 1.63326 1.80332 1.47648 1.07725 1.71912 1.10226 1.21990 0.97420 1.01308 0.78382 1.22125 0.92008 1.00420 0.95633 0.86914 1.22455 0.97583 0.94893 0.92832 1.58680 1.06468 1.43447 1.30042 1.23629 0.89752 1.04459 0.98611 0.84200 1.20119 0.87709 0.76635 0.73919 1.93176 1.95901 1.30628 1.96072 1.93179 1.89727 1.90210 1.42819 1.93221 1.71482 1.90339 1.61375 1.22597 0.79536 1.02731 0.96915 1.22672 0.94901 1.04216 0.99529 1.22885 0.96883 0.96276 1.04769 0.93128 0.95350 0.94579 0.75900 0.90708 0.91168 0.93342 0.89976 0.84183 0.83214 0.88301 0.88146 0.91231 0.91371 0.89242 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.01 12.60 21.45 0.27 -50.74 16 2 C 0.03 1.35 5.22 84.65 0.44 1.79 16 3 Si 0.95 41.82 29.55 68.60 2.03 43.85 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 7 C -0.50 -25.45 8.82 25.60 0.23 -25.23 16 8 H 0.06 3.10 7.83 -2.91 -0.02 3.08 16 9 C 0.01 0.44 1.32 -52.92 -0.07 0.37 16 10 C 0.20 9.32 5.53 86.38 0.48 9.80 16 11 N -0.72 -27.07 5.43 -478.54 -2.60 -29.67 16 12 C 0.72 26.97 8.53 179.05 1.53 28.50 16 13 O -0.64 -29.65 16.70 -3.98 -0.07 -29.71 16 14 N -0.64 -16.85 3.29 -827.35 -2.72 -19.57 16 15 C 0.13 2.78 6.11 86.53 0.53 3.31 16 16 C -0.08 -1.27 3.02 -9.90 -0.03 -1.30 16 17 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 18 C 0.05 0.72 4.46 86.30 0.38 1.11 16 19 N -0.85 -10.76 9.62 -186.72 -1.80 -12.56 16 20 C -0.14 -2.23 3.06 -9.58 -0.03 -2.25 16 21 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 22 C 0.47 7.24 2.40 71.98 0.17 7.42 16 23 F -0.18 -2.64 12.78 44.97 0.57 -2.07 16 24 F -0.18 -2.91 15.47 44.97 0.70 -2.21 16 25 F -0.18 -3.23 17.23 44.97 0.77 -2.45 16 26 C 0.11 1.97 6.31 86.73 0.55 2.51 16 27 C -0.17 -7.70 9.88 30.60 0.30 -7.40 16 28 C -0.17 -6.47 9.78 30.60 0.30 -6.17 16 29 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 30 H 0.03 1.36 7.87 -2.39 -0.02 1.34 16 31 H 0.04 1.98 7.26 -2.39 -0.02 1.96 16 32 H 0.40 13.17 6.72 -92.71 -0.62 12.55 16 33 H 0.07 1.42 7.11 -2.39 -0.02 1.40 16 34 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.05 0.65 6.84 -2.38 -0.02 0.63 16 36 H 0.08 1.18 5.16 -2.39 -0.01 1.16 16 37 H 0.34 4.09 7.92 -89.70 -0.71 3.38 16 38 H 0.35 3.37 9.08 -89.69 -0.81 2.56 16 39 H 0.10 1.82 6.75 -2.39 -0.02 1.81 16 40 H 0.10 1.58 7.31 -2.39 -0.02 1.56 16 41 H 0.07 2.97 8.06 -2.39 -0.02 2.95 16 42 H 0.07 3.16 8.14 -2.39 -0.02 3.15 16 43 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -65.22 363.44 0.86 -64.35 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -1.07 Total: 28.34 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 4.78 Total: 12.44 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -6.85 Total: -112.54 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.07 Total: -29.71 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 2.04 Total: -6.73 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -65.22 0.86 -64.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891868575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.179 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds