Wall clock time and date at job start Tue Mar 31 2020 18:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47236 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.46830 * 30.00331 * 3 2 1 6 6 H 1.48499 * 109.47094 * 150.00167 * 3 2 1 7 7 C 1.37878 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99825 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00712 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47722 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00223 * 270.00129 * 10 9 7 12 12 C 1.50697 * 109.47335 * 270.00056 * 11 10 9 13 13 C 1.34511 * 125.79312 * 89.70782 * 12 11 10 14 14 C 1.41384 * 106.84337 * 179.89148 * 13 12 11 15 15 C 1.34516 * 106.83913 * 0.37803 * 14 13 12 16 16 O 1.34306 * 125.78508 * 270.02390 * 12 11 10 17 17 C 1.34775 * 120.00135 * 89.99730 * 10 9 7 18 18 O 1.21279 * 120.00300 * 180.02562 * 17 10 9 19 19 C 1.50703 * 119.99773 * 0.02562 * 17 10 9 20 20 N 1.46506 * 109.47289 * 179.97438 * 19 17 10 21 21 C 1.34774 * 120.00072 * 179.97438 * 20 19 17 22 22 O 1.21583 * 120.00212 * 359.97438 * 21 20 19 23 23 N 1.34774 * 119.99868 * 179.97438 * 21 20 19 24 24 C 1.47025 * 125.64782 * 359.69430 * 23 21 20 25 25 C 1.54316 * 107.27565 * 180.96661 * 24 23 21 26 26 C 1.55157 * 102.86467 * 22.52540 * 25 24 23 27 27 C 1.47421 * 125.64991 * 179.97438 * 23 21 20 28 28 H 0.97004 * 119.99565 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99542 * 9 7 2 30 30 H 1.09002 * 109.46759 * 300.00344 * 9 7 2 31 31 H 1.09002 * 109.47248 * 29.99793 * 11 10 9 32 32 H 1.09004 * 109.47206 * 149.99350 * 11 10 9 33 33 H 1.08004 * 126.57805 * 0.04063 * 13 12 11 34 34 H 1.07998 * 126.57940 * 180.16620 * 14 13 12 35 35 H 1.07998 * 125.79014 * 179.74899 * 15 14 13 36 36 H 1.09001 * 109.47438 * 59.99564 * 19 17 10 37 37 H 1.09004 * 109.47113 * 299.99819 * 19 17 10 38 38 H 0.97001 * 119.99251 * 0.02562 * 20 19 17 39 39 H 1.08996 * 109.88265 * 300.50864 * 24 23 21 40 40 H 1.09004 * 109.88618 * 61.67882 * 24 23 21 41 41 H 1.08999 * 110.92403 * 264.11351 * 25 24 23 42 42 H 1.09002 * 110.59240 * 140.78551 * 25 24 23 43 43 H 1.08994 * 111.00633 * 206.22797 * 26 25 24 44 44 H 1.08997 * 111.00310 * 82.37412 * 26 25 24 45 45 H 1.09001 * 110.37135 * 274.67895 * 27 23 21 46 46 H 1.09002 * 110.36446 * 36.88910 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2677 12 6 5.6679 -3.0288 1.7022 13 6 6.0971 -2.0112 2.4700 14 6 7.4918 -2.1786 2.6300 15 6 7.8329 -3.2839 1.9435 16 8 6.7241 -3.7948 1.3836 17 6 4.2240 -3.2110 -1.1681 18 8 4.6278 -4.3546 -1.1680 19 6 3.9728 -2.5007 -2.4733 20 7 4.2901 -3.3983 -3.5868 21 6 4.1398 -2.9750 -4.8575 22 8 3.7405 -1.8483 -5.0798 23 7 4.4322 -3.8006 -5.8818 24 6 4.9276 -5.1792 -5.7566 25 6 5.1428 -5.7204 -7.1857 26 6 5.3036 -4.4254 -8.0250 27 6 4.3139 -3.4690 -7.3134 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.5640 -2.8814 2.0276 32 1 4.0773 -4.3350 1.1377 33 1 5.4919 -1.2195 2.8865 34 1 8.1564 -1.5396 3.1924 35 1 8.8293 -3.6913 1.8569 36 1 4.6032 -1.6134 -2.5313 37 1 2.9248 -2.2061 -2.5308 38 1 4.6076 -4.2975 -3.4094 39 1 5.8705 -5.1861 -5.2098 40 1 4.1910 -5.7922 -5.2373 41 1 4.2768 -6.2916 -7.5201 42 1 6.0477 -6.3261 -7.2340 43 1 5.0090 -4.5921 -9.0610 44 1 6.3238 -4.0462 -7.9667 45 1 3.2965 -3.6479 -7.6615 46 1 4.5962 -2.4306 -7.4868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900455513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:07 Heat of formation + Delta-G solvation = -35.116957 kcal Electronic energy + Delta-G solvation = -29231.918226 eV Core-core repulsion = 25123.941707 eV Total energy + Delta-G solvation = -4107.976520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.31445 -40.22946 -39.26808 -37.41789 -35.54987 -34.13711 -32.85864 -32.57581 -31.69632 -30.71738 -29.18011 -28.00778 -27.54790 -25.11852 -23.34716 -22.59109 -21.46225 -21.36337 -20.47701 -19.82795 -19.07095 -18.01988 -17.34623 -16.91700 -16.68242 -16.36674 -15.89229 -15.72274 -15.28709 -15.14893 -14.67311 -14.21760 -14.15370 -13.83981 -13.71534 -13.24148 -13.17420 -12.78990 -12.71350 -12.61778 -12.60764 -12.50227 -12.30831 -11.95880 -11.81658 -11.56183 -11.49463 -11.41035 -10.99109 -10.98373 -10.72866 -10.36034 -10.01407 -9.75109 -9.67920 -9.47200 -8.95250 -8.74372 -8.46315 -8.33473 -8.05951 -6.24157 -4.27872 1.87688 2.61403 2.78567 2.97108 3.20861 3.26302 3.30163 3.31396 3.39677 3.71323 4.14276 4.26334 4.37944 4.49952 4.68397 4.90423 4.99476 5.07274 5.07470 5.18495 5.22018 5.26393 5.43140 5.48529 5.61065 5.61558 5.68234 5.76552 5.78154 5.91913 5.93211 5.97760 6.08688 6.13304 6.22956 6.27847 6.31168 6.52695 6.67071 6.69462 7.04901 7.16018 7.36689 7.37678 7.86871 8.12301 8.29799 8.57047 8.78318 8.80356 9.34106 10.87987 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.003950 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.465677 B = 7087.162226 C = 9556.848486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.868 3.132 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.205 3.795 10 N -0.581 5.581 11 C 0.197 3.803 12 C -0.017 4.017 13 C -0.203 4.203 14 C -0.217 4.217 15 C -0.050 4.050 16 O -0.166 6.166 17 C 0.518 3.482 18 O -0.560 6.560 19 C 0.122 3.878 20 N -0.730 5.730 21 C 0.723 3.277 22 O -0.585 6.585 23 N -0.640 5.640 24 C 0.097 3.903 25 C -0.129 4.129 26 C -0.134 4.134 27 C 0.125 3.875 28 H 0.268 0.732 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.197 0.803 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.404 0.596 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -9.170 -6.738 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.123 4.123 3 Si 0.694 3.306 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.587 4.587 8 H 0.099 0.901 9 C 0.084 3.916 10 N -0.311 5.311 11 C 0.073 3.927 12 C -0.069 4.069 13 C -0.223 4.223 14 C -0.236 4.236 15 C -0.118 4.118 16 O -0.061 6.061 17 C 0.306 3.694 18 O -0.441 6.441 19 C -0.005 4.005 20 N -0.388 5.388 21 C 0.425 3.575 22 O -0.463 6.463 23 N -0.380 5.380 24 C -0.026 4.026 25 C -0.167 4.167 26 C -0.172 4.172 27 C 0.002 3.998 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.162 0.838 35 H 0.214 0.786 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.241 0.759 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.547 -8.979 -6.973 17.685 hybrid contribution 0.608 0.860 0.394 1.124 sum 14.155 -8.119 -6.579 17.595 Atomic orbital electron populations 1.69877 1.06252 1.27379 1.48752 1.24833 0.94710 0.98900 0.93859 0.86970 0.80401 0.83957 0.79273 1.19492 1.20797 1.18802 1.21300 0.88632 0.95225 1.53525 0.90113 1.19963 0.96172 0.77195 0.98247 1.47877 1.63207 1.16262 1.03715 1.19750 0.86006 0.99791 0.87124 1.23208 0.90124 0.93020 1.00540 1.21685 0.95240 1.00920 1.04450 1.21800 0.96067 1.00113 1.05645 1.23982 0.90621 0.97279 0.99952 1.84109 1.15338 1.47546 1.59139 1.20374 0.76758 0.86341 0.85906 1.90605 1.47881 1.18108 1.87476 1.20999 1.04783 0.92076 0.82671 1.44804 1.72023 1.18487 1.03503 1.15304 0.78769 0.83629 0.79822 1.90956 1.53083 1.18549 1.83700 1.47517 1.70862 1.13982 1.05616 1.22005 0.99352 0.83063 0.98208 1.22599 1.02759 0.97516 0.93830 1.22808 1.00030 0.95207 0.99193 1.22049 0.99054 0.99924 0.78816 0.92215 0.94284 0.94852 0.86462 0.88752 0.83351 0.83809 0.78632 0.88961 0.86642 0.75930 0.91585 0.91460 0.90425 0.90055 0.89778 0.90614 0.91691 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.96 55.43 0.77 -24.77 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 7 C -0.55 -14.03 9.84 -34.44 -0.34 -14.37 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.20 4.40 4.03 -5.20 -0.02 4.37 16 10 N -0.58 -11.41 2.44 -176.44 -0.43 -11.84 16 11 C 0.20 3.41 5.93 -5.20 -0.03 3.38 16 12 C -0.02 -0.29 6.90 -35.63 -0.25 -0.53 16 13 C -0.20 -3.13 10.81 -39.70 -0.43 -3.55 16 14 C -0.22 -2.91 10.91 -39.70 -0.43 -3.35 16 15 C -0.05 -0.66 12.09 29.42 0.36 -0.31 16 16 O -0.17 -2.78 10.65 5.68 0.06 -2.72 16 17 C 0.52 10.24 7.74 -10.98 -0.09 10.16 16 18 O -0.56 -11.51 15.25 5.56 0.08 -11.43 16 19 C 0.12 2.33 4.71 -5.19 -0.02 2.31 16 20 N -0.73 -12.65 5.49 -66.41 -0.36 -13.01 16 21 C 0.72 12.93 8.49 -86.92 -0.74 12.19 16 22 O -0.59 -12.74 16.60 5.29 0.09 -12.65 16 23 N -0.64 -8.76 3.33 -176.23 -0.59 -9.34 16 24 C 0.10 0.98 6.14 -3.07 -0.02 0.96 16 25 C -0.13 -0.92 6.95 -24.90 -0.17 -1.09 16 26 C -0.13 -1.00 7.08 -24.57 -0.17 -1.17 16 27 C 0.12 1.39 6.91 -2.52 -0.02 1.37 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.04 0.82 7.13 -51.93 -0.37 0.45 16 30 H 0.03 0.71 5.87 -51.93 -0.30 0.41 16 31 H 0.12 1.90 8.07 -51.93 -0.42 1.48 16 32 H 0.09 1.63 7.42 -51.93 -0.39 1.24 16 33 H 0.15 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.74 7.40 -51.93 -0.38 1.36 16 37 H 0.12 2.46 8.00 -51.93 -0.42 2.05 16 38 H 0.40 6.46 6.42 -40.82 -0.26 6.20 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.95 8.03 -51.93 -0.42 0.53 16 LS Contribution 385.82 15.07 5.81 5.81 Total: -1.00 -33.29 385.82 -8.48 -41.77 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.78 Total: 10.52 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -2.47 Total: 12.46 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.61 Total: -58.97 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: 0.23 Total: -26.80 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.29 -8.48 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900455513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.651 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds