Wall clock time and date at job start Tue Mar 31 2020 18:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00246 * 2 1 4 4 H 1.48497 * 109.47236 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.46830 * 30.00331 * 3 2 1 6 6 H 1.48499 * 109.47094 * 150.00167 * 3 2 1 7 7 C 1.37878 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99825 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00712 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47722 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00223 * 270.00129 * 10 9 7 12 12 C 1.50697 * 109.47335 * 270.00056 * 11 10 9 13 13 C 1.34511 * 125.79312 * 89.70782 * 12 11 10 14 14 C 1.41384 * 106.84337 * 179.89148 * 13 12 11 15 15 C 1.34516 * 106.83913 * 0.37803 * 14 13 12 16 16 O 1.34306 * 125.78508 * 270.02390 * 12 11 10 17 17 C 1.34775 * 120.00135 * 89.99730 * 10 9 7 18 18 O 1.21279 * 120.00300 * 180.02562 * 17 10 9 19 19 C 1.50703 * 119.99773 * 0.02562 * 17 10 9 20 20 N 1.46506 * 109.47289 * 179.97438 * 19 17 10 21 21 C 1.34774 * 120.00072 * 179.97438 * 20 19 17 22 22 O 1.21583 * 120.00212 * 359.97438 * 21 20 19 23 23 N 1.34774 * 119.99868 * 179.97438 * 21 20 19 24 24 C 1.47025 * 125.64782 * 359.69430 * 23 21 20 25 25 C 1.54316 * 107.27565 * 180.96661 * 24 23 21 26 26 C 1.55157 * 102.86467 * 22.52540 * 25 24 23 27 27 C 1.47421 * 125.64991 * 179.97438 * 23 21 20 28 28 H 0.97004 * 119.99565 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99542 * 9 7 2 30 30 H 1.09002 * 109.46759 * 300.00344 * 9 7 2 31 31 H 1.09002 * 109.47248 * 29.99793 * 11 10 9 32 32 H 1.09004 * 109.47206 * 149.99350 * 11 10 9 33 33 H 1.08004 * 126.57805 * 0.04063 * 13 12 11 34 34 H 1.07998 * 126.57940 * 180.16620 * 14 13 12 35 35 H 1.07998 * 125.79014 * 179.74899 * 15 14 13 36 36 H 1.09001 * 109.47438 * 59.99564 * 19 17 10 37 37 H 1.09004 * 109.47113 * 299.99819 * 19 17 10 38 38 H 0.97001 * 119.99251 * 0.02562 * 20 19 17 39 39 H 1.08996 * 109.88265 * 300.50864 * 24 23 21 40 40 H 1.09004 * 109.88618 * 61.67882 * 24 23 21 41 41 H 1.08999 * 110.92403 * 264.11351 * 25 24 23 42 42 H 1.09002 * 110.59240 * 140.78551 * 25 24 23 43 43 H 1.08994 * 111.00633 * 206.22797 * 26 25 24 44 44 H 1.08997 * 111.00310 * 82.37412 * 26 25 24 45 45 H 1.09001 * 110.37135 * 274.67895 * 27 23 21 46 46 H 1.09002 * 110.36446 * 36.88910 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.2445 -3.2657 1.2677 12 6 5.6679 -3.0288 1.7022 13 6 6.0971 -2.0112 2.4700 14 6 7.4918 -2.1786 2.6300 15 6 7.8329 -3.2839 1.9435 16 8 6.7241 -3.7948 1.3836 17 6 4.2240 -3.2110 -1.1681 18 8 4.6278 -4.3546 -1.1680 19 6 3.9728 -2.5007 -2.4733 20 7 4.2901 -3.3983 -3.5868 21 6 4.1398 -2.9750 -4.8575 22 8 3.7405 -1.8483 -5.0798 23 7 4.4322 -3.8006 -5.8818 24 6 4.9276 -5.1792 -5.7566 25 6 5.1428 -5.7204 -7.1857 26 6 5.3036 -4.4254 -8.0250 27 6 4.3139 -3.4690 -7.3134 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8911 31 1 3.5640 -2.8814 2.0276 32 1 4.0773 -4.3350 1.1377 33 1 5.4919 -1.2195 2.8865 34 1 8.1564 -1.5396 3.1924 35 1 8.8293 -3.6913 1.8569 36 1 4.6032 -1.6134 -2.5313 37 1 2.9248 -2.2061 -2.5308 38 1 4.6076 -4.2975 -3.4094 39 1 5.8705 -5.1861 -5.2098 40 1 4.1910 -5.7922 -5.2373 41 1 4.2768 -6.2916 -7.5201 42 1 6.0477 -6.3261 -7.2340 43 1 5.0090 -4.5921 -9.0610 44 1 6.3238 -4.0462 -7.9667 45 1 3.2965 -3.6479 -7.6615 46 1 4.5962 -2.4306 -7.4868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900455513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:06 Heat of formation + Delta-G solvation = -57.464596 kcal Electronic energy + Delta-G solvation = -29232.887293 eV Core-core repulsion = 25123.941707 eV Total energy + Delta-G solvation = -4108.945586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.46022 -41.58424 -40.71977 -38.51715 -37.17495 -35.65923 -34.67312 -33.87940 -32.77017 -32.02044 -30.05592 -29.78117 -28.86005 -26.46112 -24.66296 -24.19817 -22.59831 -22.07801 -21.65455 -21.17700 -20.45107 -19.30771 -19.19935 -18.29131 -17.92244 -17.62195 -17.36656 -17.10985 -16.61740 -16.52158 -16.14299 -15.78268 -15.46358 -15.17035 -14.68061 -14.56306 -14.37828 -14.17606 -14.05887 -13.90768 -13.76691 -13.69007 -13.53241 -13.49297 -13.21435 -13.10989 -12.58403 -12.48381 -12.20921 -12.14184 -12.10791 -11.72452 -11.59185 -11.49359 -11.12208 -10.82117 -10.80117 -10.42819 -9.77711 -9.59338 -9.42090 -8.31455 -6.39265 0.70243 1.34937 1.39004 1.41895 1.42724 1.49009 1.69378 1.99030 2.13240 2.31507 2.33505 2.94061 3.03368 3.38716 3.67536 3.71083 3.81759 4.07174 4.11339 4.17036 4.19593 4.29549 4.35292 4.42961 4.48318 4.55534 4.59231 4.62855 4.79262 4.86046 4.92020 4.93755 4.99321 5.03381 5.11552 5.17147 5.19838 5.25362 5.36364 5.39330 5.44833 5.63574 5.93180 6.07876 6.24604 6.39989 6.66500 6.81908 6.97048 7.26854 7.40204 8.84319 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008492 B = 0.003950 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.465677 B = 7087.162226 C = 9556.848486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.232 1.232 7 C -0.543 4.543 8 H 0.039 0.961 9 C 0.215 3.785 10 N -0.583 5.583 11 C 0.196 3.804 12 C -0.046 4.046 13 C -0.202 4.202 14 C -0.224 4.224 15 C -0.042 4.042 16 O -0.190 6.190 17 C 0.518 3.482 18 O -0.568 6.568 19 C 0.130 3.870 20 N -0.724 5.724 21 C 0.715 3.285 22 O -0.633 6.633 23 N -0.638 5.638 24 C 0.087 3.913 25 C -0.119 4.119 26 C -0.121 4.121 27 C 0.112 3.888 28 H 0.269 0.731 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.160 -9.575 -7.068 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.175 4.175 3 Si 0.754 3.246 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.155 1.155 7 C -0.581 4.581 8 H 0.057 0.943 9 C 0.094 3.906 10 N -0.312 5.312 11 C 0.074 3.926 12 C -0.097 4.097 13 C -0.222 4.222 14 C -0.243 4.243 15 C -0.110 4.110 16 O -0.086 6.086 17 C 0.307 3.693 18 O -0.449 6.449 19 C 0.002 3.998 20 N -0.382 5.382 21 C 0.417 3.583 22 O -0.514 6.514 23 N -0.376 5.376 24 C -0.036 4.036 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.254 0.746 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.249 0.751 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.868 -9.455 -7.307 20.672 hybrid contribution -0.398 0.851 0.493 1.061 sum 16.470 -8.605 -6.814 19.793 Atomic orbital electron populations 1.70028 1.08277 1.28363 1.51000 1.25687 0.95378 1.02809 0.93577 0.85954 0.80308 0.79049 0.79272 1.19831 1.20721 1.15504 1.21453 0.90844 0.93547 1.52253 0.94272 1.19746 0.93260 0.78529 0.99107 1.47880 1.62916 1.15774 1.04643 1.19774 0.87475 0.99210 0.86144 1.22933 0.89819 0.94384 1.02574 1.21952 0.96570 1.00285 1.03418 1.22160 0.95423 1.00694 1.06007 1.24872 0.91063 0.96823 0.98214 1.84084 1.16219 1.48279 1.60034 1.20414 0.76614 0.86229 0.86078 1.90588 1.48390 1.18313 1.87625 1.20767 1.03116 0.92696 0.83235 1.44663 1.71987 1.18457 1.03128 1.15540 0.78690 0.83621 0.80470 1.90908 1.55284 1.20781 1.84435 1.47668 1.69369 1.14913 1.05671 1.22317 0.99377 0.81030 1.00833 1.22627 1.04456 0.97423 0.91120 1.22793 0.98985 0.93978 1.00096 1.22334 1.00567 1.00303 0.77806 0.92237 0.92578 0.94144 0.85890 0.89302 0.82688 0.80943 0.74638 0.88653 0.89414 0.75095 0.91057 0.91485 0.89297 0.87627 0.87125 0.90257 0.91453 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.00 13.96 21.45 0.30 -55.70 16 2 C 0.03 1.37 5.47 84.66 0.46 1.84 16 3 Si 0.93 40.78 27.47 68.60 1.88 42.67 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.23 -8.94 6.54 99.48 0.65 -8.28 16 7 C -0.54 -28.56 9.84 25.60 0.25 -28.31 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.22 9.17 4.03 85.63 0.35 9.52 16 10 N -0.58 -23.08 2.44 -830.52 -2.03 -25.11 16 11 C 0.20 6.86 5.93 85.63 0.51 7.36 16 12 C -0.05 -1.50 6.90 24.83 0.17 -1.33 16 13 C -0.20 -5.80 10.81 22.19 0.24 -5.56 16 14 C -0.22 -5.29 10.91 22.19 0.24 -5.04 16 15 C -0.04 -0.99 12.09 66.97 0.81 -0.18 16 16 O -0.19 -6.06 10.65 -2.58 -0.03 -6.09 16 17 C 0.52 20.84 7.74 87.66 0.68 21.52 16 18 O -0.57 -23.51 15.25 -3.03 -0.05 -23.56 16 19 C 0.13 5.14 4.71 85.63 0.40 5.54 16 20 N -0.72 -25.68 5.49 -482.28 -2.65 -28.33 16 21 C 0.72 26.27 8.49 179.06 1.52 27.79 16 22 O -0.63 -28.68 16.60 -3.98 -0.07 -28.75 16 23 N -0.64 -17.35 3.33 -829.73 -2.76 -20.11 16 24 C 0.09 1.62 6.14 86.73 0.53 2.15 16 25 C -0.12 -1.31 6.95 31.78 0.22 -1.09 16 26 C -0.12 -1.46 7.08 31.99 0.23 -1.24 16 27 C 0.11 2.43 6.91 86.86 0.60 3.03 16 28 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.06 2.24 7.13 -2.39 -0.02 2.22 16 30 H 0.04 1.70 5.87 -2.39 -0.01 1.68 16 31 H 0.12 4.03 8.07 -2.39 -0.02 4.01 16 32 H 0.09 3.14 7.42 -2.38 -0.02 3.12 16 33 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16 35 H 0.24 3.22 8.06 -2.91 -0.02 3.19 16 36 H 0.10 3.68 7.40 -2.39 -0.02 3.66 16 37 H 0.09 3.97 8.00 -2.38 -0.02 3.95 16 38 H 0.41 13.26 6.42 -92.71 -0.60 12.66 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -75.47 385.82 2.17 -73.31 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.35 Total: 35.67 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: 7.21 Total: 36.00 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -7.13 Total: -129.25 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -0.14 Total: -58.39 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.88 Total: 42.67 kcal Total: -75.47 2.17 -73.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900455513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.841 kcal (2) G-P(sol) polarization free energy of solvation -75.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds