Wall clock time and date at job start Tue Mar 31 2020 18:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99595 * 2 1 4 4 H 1.48500 * 109.46969 * 274.98393 * 3 2 1 5 5 H 1.48496 * 109.47137 * 34.98392 * 3 2 1 6 6 H 1.48502 * 109.47010 * 154.98330 * 3 2 1 7 7 C 1.40027 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99871 * 173.67196 * 7 2 1 9 9 C 1.41332 * 119.99913 * 353.66727 * 7 2 1 10 10 C 1.40605 * 119.79164 * 186.32315 * 9 7 2 11 11 C 1.38307 * 119.13298 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.67156 * 359.73245 * 11 10 9 13 13 C 1.39642 * 119.49425 * 0.55681 * 12 11 10 14 14 N 1.39246 * 119.57755 * 179.70836 * 13 12 11 15 15 C 1.34778 * 119.99724 * 341.16630 * 14 13 12 16 16 O 1.21576 * 119.99917 * 354.20366 * 15 14 13 17 17 N 1.34770 * 119.99942 * 174.20579 * 15 14 13 18 18 C 1.46507 * 120.00116 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47229 * 179.97438 * 18 17 15 20 20 O 1.42903 * 109.46854 * 65.00385 * 19 18 17 21 21 C 1.42900 * 113.99817 * 179.97438 * 20 19 18 22 22 C 1.53180 * 109.54229 * 90.44377 * 21 20 19 23 23 C 1.53096 * 109.16012 * 176.84407 * 22 21 20 24 24 O 1.42901 * 109.41846 * 302.39413 * 23 22 21 25 25 C 1.42899 * 114.09691 * 61.15733 * 24 23 22 26 26 C 1.53089 * 109.41561 * 298.84077 * 25 24 23 27 27 N 1.31933 * 120.85037 * 359.42595 * 13 12 11 28 28 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.43223 * 359.97438 * 10 9 7 30 30 H 1.08006 * 120.66448 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25071 * 180.28294 * 12 11 10 32 32 H 0.96996 * 120.00237 * 161.16471 * 14 13 12 33 33 H 0.97001 * 120.00537 * 0.02562 * 17 15 14 34 34 H 1.09001 * 109.46761 * 60.00390 * 18 17 15 35 35 H 1.09000 * 109.47139 * 300.00585 * 18 17 15 36 36 H 1.08998 * 109.47375 * 305.00356 * 19 18 17 37 37 H 1.09001 * 109.46764 * 185.00001 * 19 18 17 38 38 H 1.09003 * 109.61621 * 330.22057 * 21 20 19 39 39 H 1.08997 * 109.52383 * 296.75081 * 22 21 20 40 40 H 1.09000 * 109.52125 * 56.94218 * 22 21 20 41 41 H 1.09002 * 109.47705 * 182.40470 * 23 22 21 42 42 H 1.09005 * 109.47388 * 62.37660 * 23 22 21 43 43 H 1.09006 * 109.47831 * 178.86091 * 25 24 23 44 44 H 1.09003 * 109.49209 * 58.83219 * 25 24 23 45 45 H 1.09004 * 109.52792 * 297.70299 * 26 25 24 46 46 H 1.09001 * 109.52384 * 177.51475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4954 2.6200 0.8027 6 1 3.5876 1.4122 0.5921 7 6 2.0077 -1.2126 0.0005 8 1 3.0826 -1.2154 -0.1025 9 6 1.3075 -2.4328 0.1361 10 6 2.0214 -3.6367 0.2701 11 6 1.3225 -4.8230 0.4013 12 6 -0.0638 -4.7820 0.4017 13 6 -0.7154 -3.5552 0.2589 14 7 -2.1072 -3.5127 0.2530 15 6 -2.8144 -4.6324 0.0030 16 8 -2.2407 -5.6543 -0.3206 17 7 -4.1577 -4.6194 0.1118 18 6 -4.9266 -5.8364 -0.1605 19 6 -6.4172 -5.5523 0.0346 20 8 -6.8529 -4.6036 -0.9413 21 6 -8.2386 -4.2674 -0.8469 22 6 -8.4112 -3.0618 0.0821 23 6 -9.8882 -2.6602 0.1150 24 8 -10.3312 -2.3694 -1.2121 25 6 -10.2376 -3.4743 -2.1136 26 6 -8.7747 -3.9085 -2.2362 27 7 -0.0293 -2.4351 0.1351 28 1 -0.4850 0.8400 -0.0004 29 1 3.1014 -3.6352 0.2696 30 1 1.8458 -5.7619 0.5062 31 1 -0.6350 -5.6924 0.5072 32 1 -2.5677 -2.6773 0.4288 33 1 -4.6156 -3.8040 0.3696 34 1 -4.6145 -6.6242 0.5251 35 1 -4.7485 -6.1566 -1.1871 36 1 -6.5824 -5.1481 1.0333 37 1 -6.9816 -6.4776 -0.0809 38 1 -8.7949 -5.1165 -0.4496 39 1 -8.0832 -3.3265 1.0873 40 1 -7.8152 -2.2279 -0.2888 41 1 -10.0106 -1.7763 0.7410 42 1 -10.4787 -3.4801 0.5239 43 1 -10.6117 -3.1767 -3.0933 44 1 -10.8327 -4.3048 -1.7341 45 1 -8.1859 -3.0918 -2.6539 46 1 -8.7065 -4.7788 -2.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932421188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:07 Heat of formation + Delta-G solvation = -78.437967 kcal Electronic energy + Delta-G solvation = -28154.976081 eV Core-core repulsion = 24045.121022 eV Total energy + Delta-G solvation = -4109.855060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.13686 -39.85789 -38.14296 -37.63989 -34.90507 -34.12043 -33.23295 -32.68758 -31.57079 -30.36166 -29.78119 -28.45268 -25.41663 -24.79564 -24.08269 -23.09655 -21.63378 -21.50294 -20.81351 -20.18222 -18.18502 -17.55423 -17.30699 -16.69528 -16.51653 -16.34710 -15.80792 -15.30354 -15.24169 -14.91253 -14.63165 -14.47745 -14.34499 -14.03670 -13.90809 -13.43242 -13.25442 -12.85924 -12.80278 -12.71527 -12.16131 -12.08119 -11.92594 -11.78294 -11.52827 -11.25563 -11.23850 -11.05407 -10.85969 -10.79452 -10.62891 -10.11469 -10.08927 -9.87550 -9.78375 -9.26974 -9.04802 -8.84347 -7.97846 -7.62598 -7.00548 -6.37911 -4.45620 2.72839 2.97231 3.00274 3.11166 3.14681 3.17199 3.28827 3.46693 3.76224 3.98171 4.28594 4.31817 4.51613 4.58340 4.60151 4.73897 4.75974 4.82936 4.88647 4.90319 5.02370 5.05895 5.17917 5.24161 5.38962 5.55688 5.58056 5.69870 5.75770 5.81304 5.95468 6.20022 6.48606 6.55331 6.74165 6.77272 6.85087 6.86696 6.99307 7.14908 7.28650 7.56687 7.67250 7.95410 8.12177 8.21981 8.48878 8.74885 8.94566 9.10060 10.10466 10.35430 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.002347 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.353123 B =11928.666829 C =13790.001817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.291 4.291 11 C -0.050 4.050 12 C -0.312 4.312 13 C 0.374 3.626 14 N -0.659 5.659 15 C 0.707 3.293 16 O -0.572 6.572 17 N -0.743 5.743 18 C 0.144 3.856 19 C 0.049 3.951 20 O -0.373 6.373 21 C 0.090 3.910 22 C -0.181 4.181 23 C 0.064 3.936 24 O -0.382 6.382 25 C 0.064 3.936 26 C -0.155 4.155 27 N -0.509 5.509 28 H 0.270 0.730 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.403 0.597 33 H 0.397 0.603 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.829 -5.955 0.922 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.314 4.314 11 C -0.074 4.074 12 C -0.337 4.337 13 C 0.139 3.861 14 N -0.305 5.305 15 C 0.407 3.593 16 O -0.449 6.449 17 N -0.401 5.401 18 C 0.020 3.980 19 C -0.028 4.028 20 O -0.292 6.292 21 C 0.032 3.968 22 C -0.219 4.219 23 C -0.013 4.013 24 O -0.300 6.300 25 C -0.013 4.013 26 C -0.193 4.193 27 N -0.228 5.228 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.231 0.769 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.907 -5.732 0.352 22.647 hybrid contribution 0.337 0.399 0.562 0.767 sum -21.570 -5.332 0.914 22.238 Atomic orbital electron populations 1.70127 1.07206 1.27415 1.29772 1.26034 0.94863 1.00966 0.93430 0.86338 0.80626 0.81015 0.78950 1.19597 1.20198 1.18524 1.19539 0.94603 0.89349 1.43376 0.89712 1.18177 0.86321 0.92058 0.88091 1.21695 0.98730 0.93760 1.17254 1.20805 0.93708 0.96524 0.96392 1.21619 0.94496 0.98123 1.19492 1.18219 0.81986 0.91333 0.94529 1.42249 1.05541 1.10723 1.72028 1.15751 0.81178 0.83934 0.78450 1.90833 1.68527 1.32101 1.53448 1.44991 1.04928 1.14323 1.75845 1.21152 0.87179 0.87061 1.02625 1.22866 0.94965 0.92652 0.92277 1.88038 1.24507 1.62025 1.54634 1.22083 0.82930 0.95934 0.95886 1.22761 0.98229 1.00034 1.00877 1.22560 0.92939 1.01454 0.84355 1.87964 1.85227 1.36511 1.20345 1.22584 0.94685 0.89495 0.94509 1.22308 0.96985 1.03337 0.96637 1.68025 1.08393 1.24662 1.21721 0.91920 0.88293 0.88402 0.84985 0.76186 0.76874 0.90056 0.90745 0.92538 0.91591 0.92118 0.90574 0.89700 0.88409 0.93182 0.88226 0.93098 0.89799 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.09 11.49 55.55 0.64 -18.45 16 2 C 0.07 1.83 5.49 -17.34 -0.10 1.73 16 3 Si 0.91 18.73 29.56 -169.99 -5.03 13.70 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.44 -11.86 9.13 -37.74 -0.34 -12.20 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 9 C 0.28 7.89 6.54 -84.99 -0.56 7.33 16 10 C -0.29 -7.51 9.83 -38.66 -0.38 -7.89 16 11 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 12 C -0.31 -7.89 8.83 -38.89 -0.34 -8.24 16 13 C 0.37 9.59 7.51 -154.99 -1.16 8.43 16 14 N -0.66 -13.82 5.42 -15.79 -0.09 -13.91 16 15 C 0.71 13.59 8.40 -86.92 -0.73 12.85 16 16 O -0.57 -12.87 13.14 5.30 0.07 -12.80 16 17 N -0.74 -10.28 5.51 -65.22 -0.36 -10.64 16 18 C 0.14 1.63 6.06 -4.04 -0.02 1.60 16 19 C 0.05 0.40 5.89 37.16 0.22 0.62 16 20 O -0.37 -3.67 9.94 -35.23 -0.35 -4.02 16 21 C 0.09 0.69 2.70 -26.55 -0.07 0.62 16 22 C -0.18 -1.33 5.76 -26.59 -0.15 -1.48 16 23 C 0.06 0.43 6.84 37.21 0.25 0.68 16 24 O -0.38 -3.38 10.77 -35.23 -0.38 -3.76 16 25 C 0.06 0.42 6.84 37.20 0.25 0.68 16 26 C -0.15 -1.16 5.79 -26.59 -0.15 -1.32 16 27 N -0.51 -14.23 7.92 -10.26 -0.08 -14.31 16 28 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 29 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 31 H 0.13 3.30 5.33 -52.50 -0.28 3.02 16 32 H 0.40 7.62 8.84 -40.82 -0.36 7.26 16 33 H 0.40 4.66 8.49 -40.82 -0.35 4.31 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.39 7.99 -51.93 -0.42 -0.02 16 37 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 38 H 0.06 0.38 7.79 -51.93 -0.40 -0.03 16 39 H 0.08 0.48 7.99 -51.93 -0.42 0.06 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -33.78 380.91 -10.36 -44.14 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.84 Total: 12.48 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -3.69 Total: 1.82 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.11 Total: -57.31 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.66 Total: -20.58 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.78 -10.36 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932421188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.296 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds