Wall clock time and date at job start Tue Mar 31 2020 18:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86804 * 119.99595 * 2 1 4 4 H 1.48500 * 109.46969 * 274.98393 * 3 2 1 5 5 H 1.48496 * 109.47137 * 34.98392 * 3 2 1 6 6 H 1.48502 * 109.47010 * 154.98330 * 3 2 1 7 7 C 1.40027 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07989 * 119.99871 * 173.67196 * 7 2 1 9 9 C 1.41332 * 119.99913 * 353.66727 * 7 2 1 10 10 C 1.40605 * 119.79164 * 186.32315 * 9 7 2 11 11 C 1.38307 * 119.13298 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.67156 * 359.73245 * 11 10 9 13 13 C 1.39642 * 119.49425 * 0.55681 * 12 11 10 14 14 N 1.39246 * 119.57755 * 179.70836 * 13 12 11 15 15 C 1.34778 * 119.99724 * 341.16630 * 14 13 12 16 16 O 1.21576 * 119.99917 * 354.20366 * 15 14 13 17 17 N 1.34770 * 119.99942 * 174.20579 * 15 14 13 18 18 C 1.46507 * 120.00116 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47229 * 179.97438 * 18 17 15 20 20 O 1.42903 * 109.46854 * 65.00385 * 19 18 17 21 21 C 1.42900 * 113.99817 * 179.97438 * 20 19 18 22 22 C 1.53180 * 109.54229 * 90.44377 * 21 20 19 23 23 C 1.53096 * 109.16012 * 176.84407 * 22 21 20 24 24 O 1.42901 * 109.41846 * 302.39413 * 23 22 21 25 25 C 1.42899 * 114.09691 * 61.15733 * 24 23 22 26 26 C 1.53089 * 109.41561 * 298.84077 * 25 24 23 27 27 N 1.31933 * 120.85037 * 359.42595 * 13 12 11 28 28 H 0.97001 * 120.00103 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.43223 * 359.97438 * 10 9 7 30 30 H 1.08006 * 120.66448 * 180.02562 * 11 10 9 31 31 H 1.07994 * 120.25071 * 180.28294 * 12 11 10 32 32 H 0.96996 * 120.00237 * 161.16471 * 14 13 12 33 33 H 0.97001 * 120.00537 * 0.02562 * 17 15 14 34 34 H 1.09001 * 109.46761 * 60.00390 * 18 17 15 35 35 H 1.09000 * 109.47139 * 300.00585 * 18 17 15 36 36 H 1.08998 * 109.47375 * 305.00356 * 19 18 17 37 37 H 1.09001 * 109.46764 * 185.00001 * 19 18 17 38 38 H 1.09003 * 109.61621 * 330.22057 * 21 20 19 39 39 H 1.08997 * 109.52383 * 296.75081 * 22 21 20 40 40 H 1.09000 * 109.52125 * 56.94218 * 22 21 20 41 41 H 1.09002 * 109.47705 * 182.40470 * 23 22 21 42 42 H 1.09005 * 109.47388 * 62.37660 * 23 22 21 43 43 H 1.09006 * 109.47831 * 178.86091 * 25 24 23 44 44 H 1.09003 * 109.49209 * 58.83219 * 25 24 23 45 45 H 1.09004 * 109.52792 * 297.70299 * 26 25 24 46 46 H 1.09001 * 109.52384 * 177.51475 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4954 2.6200 0.8027 6 1 3.5876 1.4122 0.5921 7 6 2.0077 -1.2126 0.0005 8 1 3.0826 -1.2154 -0.1025 9 6 1.3075 -2.4328 0.1361 10 6 2.0214 -3.6367 0.2701 11 6 1.3225 -4.8230 0.4013 12 6 -0.0638 -4.7820 0.4017 13 6 -0.7154 -3.5552 0.2589 14 7 -2.1072 -3.5127 0.2530 15 6 -2.8144 -4.6324 0.0030 16 8 -2.2407 -5.6543 -0.3206 17 7 -4.1577 -4.6194 0.1118 18 6 -4.9266 -5.8364 -0.1605 19 6 -6.4172 -5.5523 0.0346 20 8 -6.8529 -4.6036 -0.9413 21 6 -8.2386 -4.2674 -0.8469 22 6 -8.4112 -3.0618 0.0821 23 6 -9.8882 -2.6602 0.1150 24 8 -10.3312 -2.3694 -1.2121 25 6 -10.2376 -3.4743 -2.1136 26 6 -8.7747 -3.9085 -2.2362 27 7 -0.0293 -2.4351 0.1351 28 1 -0.4850 0.8400 -0.0004 29 1 3.1014 -3.6352 0.2696 30 1 1.8458 -5.7619 0.5062 31 1 -0.6350 -5.6924 0.5072 32 1 -2.5677 -2.6773 0.4288 33 1 -4.6156 -3.8040 0.3696 34 1 -4.6145 -6.6242 0.5251 35 1 -4.7485 -6.1566 -1.1871 36 1 -6.5824 -5.1481 1.0333 37 1 -6.9816 -6.4776 -0.0809 38 1 -8.7949 -5.1165 -0.4496 39 1 -8.0832 -3.3265 1.0873 40 1 -7.8152 -2.2279 -0.2888 41 1 -10.0106 -1.7763 0.7410 42 1 -10.4787 -3.4801 0.5239 43 1 -10.6117 -3.1767 -3.0933 44 1 -10.8327 -4.3048 -1.7341 45 1 -8.1859 -3.0918 -2.6539 46 1 -8.7065 -4.7788 -2.8889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932421188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:06 Heat of formation + Delta-G solvation = -102.072986 kcal Electronic energy + Delta-G solvation = -28156.000973 eV Core-core repulsion = 24045.121022 eV Total energy + Delta-G solvation = -4110.879951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.60010 -40.59402 -39.72413 -38.59793 -36.23506 -35.76677 -35.07395 -33.43025 -32.32050 -32.09465 -31.30717 -29.80004 -27.36119 -25.40984 -24.67300 -24.25747 -23.48020 -22.94895 -21.86366 -21.34789 -19.82095 -19.10004 -18.29407 -18.15934 -17.14653 -17.12945 -16.91226 -16.75010 -16.40226 -16.22517 -15.93030 -15.87009 -15.47671 -15.23783 -14.90682 -14.74301 -14.62017 -14.25964 -13.92071 -13.80528 -13.60322 -13.25793 -12.92946 -12.90579 -12.75604 -12.63125 -12.56630 -12.35475 -12.13217 -11.84783 -11.82566 -11.59167 -11.33884 -11.07540 -10.84236 -10.66705 -10.47162 -10.16917 -9.95081 -9.62093 -8.92011 -8.30258 -6.49230 0.83347 1.13636 1.43025 1.53267 1.57388 1.59035 2.12726 2.25104 2.53519 2.89606 2.96616 3.19928 3.71971 3.76234 3.92994 3.96036 3.99432 4.11614 4.20203 4.26327 4.33690 4.34632 4.44848 4.52430 4.64034 4.66058 4.75743 4.76165 4.80788 4.85919 4.89482 4.95058 5.00577 5.05840 5.12882 5.21844 5.24888 5.44215 5.59301 5.70555 5.87605 5.98400 6.22509 6.23345 6.25155 6.29915 6.75417 6.90690 7.03540 7.50184 8.12017 8.46016 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.002347 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.353123 B =11928.666829 C =13790.001817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.245 3.755 10 C -0.309 4.309 11 C -0.048 4.048 12 C -0.326 4.326 13 C 0.364 3.636 14 N -0.657 5.657 15 C 0.705 3.295 16 O -0.606 6.606 17 N -0.721 5.721 18 C 0.139 3.861 19 C 0.056 3.944 20 O -0.399 6.399 21 C 0.087 3.913 22 C -0.178 4.178 23 C 0.061 3.939 24 O -0.408 6.408 25 C 0.063 3.937 26 C -0.155 4.155 27 N -0.536 5.536 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.411 0.589 33 H 0.410 0.590 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.109 -5.998 1.591 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.498 4.498 8 H 0.110 0.890 9 C 0.118 3.882 10 C -0.332 4.332 11 C -0.072 4.072 12 C -0.351 4.351 13 C 0.128 3.872 14 N -0.304 5.304 15 C 0.405 3.595 16 O -0.486 6.486 17 N -0.378 5.378 18 C 0.016 3.984 19 C -0.020 4.020 20 O -0.319 6.319 21 C 0.029 3.971 22 C -0.216 4.216 23 C -0.015 4.015 24 O -0.327 6.327 25 C -0.013 4.013 26 C -0.192 4.192 27 N -0.255 5.255 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.247 0.753 33 H 0.246 0.754 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.258 -5.791 1.030 23.990 hybrid contribution 0.633 0.335 0.329 0.788 sum -22.625 -5.455 1.359 23.313 Atomic orbital electron populations 1.70205 1.08829 1.29008 1.29579 1.26980 0.95787 1.04453 0.92421 0.85101 0.79143 0.75700 0.79163 1.18985 1.19187 1.17905 1.19930 0.95225 0.90236 1.44416 0.89005 1.18714 0.87067 0.93473 0.88910 1.21881 0.99572 0.93674 1.18083 1.21177 0.93613 0.97542 0.94909 1.21827 0.95144 0.98159 1.19952 1.18563 0.83738 0.91122 0.93765 1.42183 1.04208 1.11811 1.72238 1.15928 0.82598 0.82857 0.78156 1.90792 1.69700 1.33033 1.55025 1.44929 1.02962 1.15929 1.73969 1.21400 0.89114 0.86034 1.01901 1.22878 0.92547 0.93853 0.92740 1.88008 1.25900 1.62582 1.55377 1.22222 0.82127 0.96780 0.95956 1.22731 0.98424 0.99123 1.01359 1.22684 0.92627 1.02478 0.83739 1.87930 1.85403 1.37910 1.21436 1.22698 0.94189 0.89641 0.94775 1.22307 0.97366 1.02696 0.96878 1.68051 1.08720 1.25704 1.23071 0.91078 0.86802 0.85090 0.84732 0.75280 0.75417 0.89263 0.92335 0.90765 0.88785 0.89776 0.89279 0.92121 0.87938 0.91205 0.87544 0.91099 0.92296 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.26 11.49 21.84 0.25 -40.01 16 2 C 0.03 1.30 5.49 85.29 0.47 1.76 16 3 Si 0.99 38.17 29.56 68.60 2.03 40.20 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.47 -25.72 9.13 23.47 0.21 -25.51 16 8 H 0.09 4.72 7.85 -2.92 -0.02 4.70 16 9 C 0.24 14.12 6.54 40.20 0.26 14.38 16 10 C -0.31 -16.13 9.83 22.86 0.22 -15.90 16 11 C -0.05 -2.34 10.15 22.39 0.23 -2.11 16 12 C -0.33 -16.66 8.83 22.72 0.20 -16.46 16 13 C 0.36 19.06 7.51 133.24 1.00 20.06 16 14 N -0.66 -28.02 5.42 -322.14 -1.75 -29.76 16 15 C 0.70 27.16 8.40 179.06 1.50 28.66 16 16 O -0.61 -27.49 13.14 -3.96 -0.05 -27.54 16 17 N -0.72 -19.37 5.51 -478.54 -2.64 -22.00 16 18 C 0.14 2.94 6.06 86.38 0.52 3.46 16 19 C 0.06 0.76 5.89 71.98 0.42 1.18 16 20 O -0.40 -7.19 9.94 -148.98 -1.48 -8.68 16 21 C 0.09 1.16 2.70 30.71 0.08 1.25 16 22 C -0.18 -2.36 5.76 30.69 0.18 -2.18 16 23 C 0.06 0.72 6.84 72.01 0.49 1.21 16 24 O -0.41 -6.77 10.77 -148.98 -1.60 -8.38 16 25 C 0.06 0.74 6.84 72.01 0.49 1.24 16 26 C -0.15 -2.18 5.79 30.68 0.18 -2.00 16 27 N -0.54 -30.72 7.92 -186.37 -1.48 -32.20 16 28 H 0.28 13.34 8.29 -92.71 -0.77 12.57 16 29 H 0.11 5.40 8.06 -2.91 -0.02 5.37 16 30 H 0.13 5.35 8.06 -2.91 -0.02 5.32 16 31 H 0.14 6.80 5.33 -3.15 -0.02 6.78 16 32 H 0.41 15.81 8.84 -92.71 -0.82 14.99 16 33 H 0.41 9.16 8.49 -92.71 -0.79 8.37 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.07 0.77 7.99 -2.39 -0.02 0.75 16 37 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 38 H 0.08 0.75 7.79 -2.39 -0.02 0.73 16 39 H 0.09 0.92 7.99 -2.39 -0.02 0.90 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -74.80 380.91 -0.83 -75.64 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -0.59 Total: 43.68 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.47 Total: 9.04 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -5.61 Total: -123.97 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -3.14 Total: -44.59 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -74.80 -0.83 -75.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932421188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.436 kcal (2) G-P(sol) polarization free energy of solvation -74.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds