Wall clock time and date at job start Tue Mar 31 2020 18:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47234 * 300.00137 * 3 2 1 6 6 H 1.48503 * 109.46984 * 60.00210 * 3 2 1 7 7 C 1.37876 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00187 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47073 * 60.00241 * 9 7 2 11 11 N 1.46503 * 109.46970 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99929 * 204.99739 * 11 9 7 13 13 O 1.21585 * 120.00213 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99626 * 180.02562 * 12 11 9 15 15 C 1.47484 * 125.59699 * 0.02562 * 14 12 11 16 16 C 1.54324 * 107.03686 * 181.00687 * 15 14 12 17 17 C 1.55155 * 103.10103 * 22.24112 * 16 15 14 18 18 H 1.09001 * 111.00568 * 82.48533 * 17 16 15 19 19 N 1.46898 * 111.00849 * 206.33480 * 17 16 15 20 20 C 1.48526 * 111.00567 * 177.40917 * 19 17 16 21 21 C 1.54936 * 103.22779 * 159.72124 * 20 19 17 22 22 C 1.54594 * 102.92122 * 322.58767 * 21 20 19 23 23 C 1.47904 * 110.99664 * 294.81153 * 19 17 16 24 24 C 1.47432 * 125.64252 * 180.02562 * 14 12 11 25 25 C 1.52998 * 109.46910 * 299.99778 * 9 7 2 26 26 F 1.39897 * 109.47686 * 299.99987 * 25 9 7 27 27 F 1.39902 * 109.46893 * 60.00616 * 25 9 7 28 28 F 1.39909 * 109.46848 * 179.97438 * 25 9 7 29 29 H 0.96998 * 120.00050 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00039 * 25.00235 * 11 9 7 31 31 H 1.09001 * 110.03128 * 61.64509 * 15 14 12 32 32 H 1.08995 * 109.96248 * 300.33314 * 15 14 12 33 33 H 1.08998 * 110.71794 * 263.79187 * 16 15 14 34 34 H 1.08997 * 110.71944 * 140.69267 * 16 15 14 35 35 H 1.08997 * 110.66911 * 278.15951 * 20 19 17 36 36 H 1.08999 * 110.66250 * 41.28928 * 20 19 17 37 37 H 1.09001 * 110.72495 * 204.23454 * 21 20 19 38 38 H 1.08996 * 110.87723 * 81.01490 * 21 20 19 39 39 H 1.08999 * 110.31053 * 263.03844 * 22 21 20 40 40 H 1.09004 * 110.39325 * 140.91705 * 22 21 20 41 41 H 1.08999 * 109.91858 * 333.49932 * 23 19 17 42 42 H 1.09008 * 109.91818 * 94.60239 * 23 19 17 43 43 H 1.09000 * 110.36595 * 37.07596 * 24 14 12 44 44 H 1.08993 * 110.36586 * 274.74836 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0018 12 6 1.8364 -4.8121 -0.4953 13 8 0.7158 -4.9699 -0.9398 14 7 2.7121 -5.8367 -0.4959 15 6 4.0961 -5.7833 0.0109 16 6 4.7166 -7.1772 -0.2210 17 6 3.8398 -7.7679 -1.3567 18 1 4.1722 -7.4123 -2.3320 19 7 3.8340 -9.2361 -1.3080 20 6 2.9456 -9.8000 -2.3562 21 6 3.4544 -11.2556 -2.5067 22 6 4.9846 -11.1054 -2.3457 23 6 5.1808 -9.7809 -1.5849 24 6 2.4449 -7.1950 -1.0030 25 6 0.3719 -2.5805 1.2491 26 9 1.1766 -2.5066 2.3911 27 9 -0.5373 -1.5171 1.2496 28 9 -0.3281 -3.7918 1.2487 29 1 -0.4850 0.8400 -0.0004 30 1 3.0971 -3.4868 0.3526 31 1 4.0951 -5.5505 1.0757 32 1 4.6635 -5.0296 -0.5349 33 1 4.6430 -7.7867 0.6797 34 1 5.7546 -7.0888 -0.5415 35 1 1.9065 -9.7877 -2.0273 36 1 3.0604 -9.2536 -3.2924 37 1 3.2073 -11.6507 -3.4921 38 1 3.0449 -11.8932 -1.7233 39 1 5.4647 -11.0551 -3.3229 40 1 5.3892 -11.9368 -1.7684 41 1 5.7458 -9.0800 -2.1994 42 1 5.7080 -9.9619 -0.6482 43 1 1.8162 -7.1510 -1.8923 44 1 1.9704 -7.8013 -0.2315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932917398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:00 Heat of formation + Delta-G solvation = -151.851585 kcal Electronic energy + Delta-G solvation = -30526.371220 eV Core-core repulsion = 25871.475966 eV Total energy + Delta-G solvation = -4654.895253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.28249 -45.93502 -45.55396 -40.11844 -38.91918 -36.81555 -34.58328 -32.80532 -32.20188 -30.14937 -29.22654 -28.50987 -27.20673 -24.53427 -23.45601 -22.12827 -21.49702 -20.87178 -20.28777 -19.38515 -18.17667 -16.95535 -16.81962 -16.73726 -16.53350 -16.16628 -15.79356 -15.16952 -14.85137 -14.65445 -14.38301 -14.19773 -13.76765 -13.29853 -13.07660 -13.01263 -12.86471 -12.69062 -12.51915 -12.39343 -12.33408 -12.24788 -12.21737 -11.91918 -11.76772 -11.65206 -11.50729 -11.29539 -11.15729 -10.99186 -10.95585 -10.85923 -10.83092 -10.75661 -10.37857 -9.62240 -9.51419 -8.71967 -8.71220 -8.45366 -8.05779 -6.21779 -4.45425 2.95038 3.18605 3.26005 3.29644 3.69302 3.82539 4.14842 4.20744 4.35556 4.50399 4.58055 4.64133 4.66072 4.76431 4.93392 4.95764 5.00122 5.17975 5.22303 5.31401 5.38026 5.49390 5.53841 5.61038 5.67965 5.69318 5.74567 5.83078 5.88271 5.91619 5.92914 5.96270 5.99354 6.24740 6.43724 6.58629 6.81820 6.93524 7.26046 7.43119 7.64405 7.70403 8.51537 8.63895 9.16452 9.27629 10.69966 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.002822 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.860917 B = 9920.623662 C =10433.129206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.723 5.723 12 C 0.718 3.282 13 O -0.581 6.581 14 N -0.642 5.642 15 C 0.101 3.899 16 C -0.119 4.119 17 C 0.059 3.941 18 H 0.059 0.941 19 N -0.506 5.506 20 C 0.031 3.969 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.037 3.963 24 C 0.140 3.860 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.138 7.138 28 F -0.216 7.216 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.375 -17.230 -2.996 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.103 0.897 11 N -0.376 5.376 12 C 0.420 3.580 13 O -0.458 6.458 14 N -0.383 5.383 15 C -0.022 4.022 16 C -0.157 4.157 17 C -0.050 4.050 18 H 0.077 0.923 19 N -0.231 5.231 20 C -0.096 4.096 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.090 4.090 24 C 0.016 3.984 25 C 0.359 3.641 26 F -0.192 7.192 27 F -0.119 7.119 28 F -0.198 7.198 29 H 0.078 0.922 30 H 0.228 0.772 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.076 -17.244 -2.781 20.164 hybrid contribution 1.019 1.195 -0.268 1.593 sum 11.095 -16.049 -3.050 19.747 Atomic orbital electron populations 1.70422 1.05835 1.27221 1.43770 1.25083 0.95156 1.00078 0.94107 0.86155 0.79769 0.81996 0.77868 1.19437 1.20582 1.20565 1.20911 0.93785 0.88085 1.56015 0.90498 1.19614 0.88274 0.84918 0.91611 0.89745 1.45261 1.17360 1.09507 1.65447 1.15565 0.83390 0.79801 0.79261 1.90919 1.19148 1.82571 1.53157 1.47557 1.13104 1.10746 1.66896 1.22026 0.82989 0.97625 0.99602 1.22625 0.98584 0.95183 0.99287 1.22996 0.96518 0.87518 0.98012 0.92277 1.64744 1.07280 1.05422 1.45661 1.23280 0.98353 0.94541 0.93451 1.22472 0.95084 0.96581 1.02003 1.22402 0.96792 0.97570 1.00233 1.22832 0.90962 0.95403 0.99853 1.21830 0.95144 0.81826 0.99569 1.23164 0.80911 0.72813 0.87176 1.92979 1.74431 1.96194 1.55618 1.93400 1.68415 1.53842 1.96207 1.93077 1.81410 1.48365 1.96963 0.92183 0.77243 0.91304 0.91522 0.89525 0.90445 0.89538 0.93494 0.91091 0.90639 0.91613 0.91004 0.93719 0.90206 0.90785 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.25 9.50 55.43 0.53 -22.72 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.55 -14.23 8.46 -34.44 -0.29 -14.53 16 8 H 0.08 1.88 7.74 -52.48 -0.41 1.47 16 9 C 0.26 6.70 2.21 -69.08 -0.15 6.54 16 10 H 0.08 2.42 7.58 -51.93 -0.39 2.02 16 11 N -0.72 -15.56 4.95 -59.81 -0.30 -15.85 16 12 C 0.72 15.31 8.02 -86.92 -0.70 14.62 16 13 O -0.58 -14.68 15.17 5.29 0.08 -14.60 16 14 N -0.64 -10.48 3.34 -175.87 -0.59 -11.06 16 15 C 0.10 1.23 6.18 -2.81 -0.02 1.21 16 16 C -0.12 -1.13 5.99 -24.90 -0.15 -1.27 16 17 C 0.06 0.63 2.36 -65.57 -0.15 0.47 16 18 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 19 N -0.51 -4.82 5.15 -219.96 -1.13 -5.95 16 20 C 0.03 0.27 5.99 -1.90 -0.01 0.26 16 21 C -0.12 -0.86 7.06 -24.87 -0.18 -1.04 16 22 C -0.13 -0.85 6.93 -25.38 -0.18 -1.03 16 23 C 0.04 0.29 6.11 -2.75 -0.02 0.27 16 24 C 0.14 1.96 5.94 -2.53 -0.02 1.95 16 25 C 0.42 10.99 2.81 37.16 0.10 11.09 16 26 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 27 F -0.14 -3.89 12.91 2.25 0.03 -3.86 16 28 F -0.22 -5.75 15.68 2.25 0.04 -5.71 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 7.40 7.52 -40.82 -0.31 7.09 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 36 H 0.05 0.42 8.01 -51.93 -0.42 0.00 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.34 7.74 -51.93 -0.40 -0.07 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 360.28 15.07 5.43 5.43 Total: -1.00 -31.31 360.28 -9.29 -40.60 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.54 Total: 3.69 kcal Atomic # 6 Polarization: 21.99 SS G_CDS: -1.85 Total: 20.15 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -1.49 Total: -55.58 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.60 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 0.10 Total: -14.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.31 -9.29 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.251 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds