Wall clock time and date at job start Tue Mar 31 2020 18:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47234 * 300.00137 * 3 2 1 6 6 H 1.48503 * 109.46984 * 60.00210 * 3 2 1 7 7 C 1.37876 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00187 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47073 * 60.00241 * 9 7 2 11 11 N 1.46503 * 109.46970 * 179.97438 * 9 7 2 12 12 C 1.34777 * 119.99929 * 204.99739 * 11 9 7 13 13 O 1.21585 * 120.00213 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99626 * 180.02562 * 12 11 9 15 15 C 1.47484 * 125.59699 * 0.02562 * 14 12 11 16 16 C 1.54324 * 107.03686 * 181.00687 * 15 14 12 17 17 C 1.55155 * 103.10103 * 22.24112 * 16 15 14 18 18 H 1.09001 * 111.00568 * 82.48533 * 17 16 15 19 19 N 1.46898 * 111.00849 * 206.33480 * 17 16 15 20 20 C 1.48526 * 111.00567 * 177.40917 * 19 17 16 21 21 C 1.54936 * 103.22779 * 159.72124 * 20 19 17 22 22 C 1.54594 * 102.92122 * 322.58767 * 21 20 19 23 23 C 1.47904 * 110.99664 * 294.81153 * 19 17 16 24 24 C 1.47432 * 125.64252 * 180.02562 * 14 12 11 25 25 C 1.52998 * 109.46910 * 299.99778 * 9 7 2 26 26 F 1.39897 * 109.47686 * 299.99987 * 25 9 7 27 27 F 1.39902 * 109.46893 * 60.00616 * 25 9 7 28 28 F 1.39909 * 109.46848 * 179.97438 * 25 9 7 29 29 H 0.96998 * 120.00050 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00039 * 25.00235 * 11 9 7 31 31 H 1.09001 * 110.03128 * 61.64509 * 15 14 12 32 32 H 1.08995 * 109.96248 * 300.33314 * 15 14 12 33 33 H 1.08998 * 110.71794 * 263.79187 * 16 15 14 34 34 H 1.08997 * 110.71944 * 140.69267 * 16 15 14 35 35 H 1.08997 * 110.66911 * 278.15951 * 20 19 17 36 36 H 1.08999 * 110.66250 * 41.28928 * 20 19 17 37 37 H 1.09001 * 110.72495 * 204.23454 * 21 20 19 38 38 H 1.08996 * 110.87723 * 81.01490 * 21 20 19 39 39 H 1.08999 * 110.31053 * 263.03844 * 22 21 20 40 40 H 1.09004 * 110.39325 * 140.91705 * 22 21 20 41 41 H 1.08999 * 109.91858 * 333.49932 * 23 19 17 42 42 H 1.09008 * 109.91818 * 94.60239 * 23 19 17 43 43 H 1.09000 * 110.36595 * 37.07596 * 24 14 12 44 44 H 1.08993 * 110.36586 * 274.74836 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 2.2030 -3.6127 -0.0018 12 6 1.8364 -4.8121 -0.4953 13 8 0.7158 -4.9699 -0.9398 14 7 2.7121 -5.8367 -0.4959 15 6 4.0961 -5.7833 0.0109 16 6 4.7166 -7.1772 -0.2210 17 6 3.8398 -7.7679 -1.3567 18 1 4.1722 -7.4123 -2.3320 19 7 3.8340 -9.2361 -1.3080 20 6 2.9456 -9.8000 -2.3562 21 6 3.4544 -11.2556 -2.5067 22 6 4.9846 -11.1054 -2.3457 23 6 5.1808 -9.7809 -1.5849 24 6 2.4449 -7.1950 -1.0030 25 6 0.3719 -2.5805 1.2491 26 9 1.1766 -2.5066 2.3911 27 9 -0.5373 -1.5171 1.2496 28 9 -0.3281 -3.7918 1.2487 29 1 -0.4850 0.8400 -0.0004 30 1 3.0971 -3.4868 0.3526 31 1 4.0951 -5.5505 1.0757 32 1 4.6635 -5.0296 -0.5349 33 1 4.6430 -7.7867 0.6797 34 1 5.7546 -7.0888 -0.5415 35 1 1.9065 -9.7877 -2.0273 36 1 3.0604 -9.2536 -3.2924 37 1 3.2073 -11.6507 -3.4921 38 1 3.0449 -11.8932 -1.7233 39 1 5.4647 -11.0551 -3.3229 40 1 5.3892 -11.9368 -1.7684 41 1 5.7458 -9.0800 -2.1994 42 1 5.7080 -9.9619 -0.6482 43 1 1.8162 -7.1510 -1.8923 44 1 1.9704 -7.8013 -0.2315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932917398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:59 Heat of formation + Delta-G solvation = -172.865265 kcal Electronic energy + Delta-G solvation = -30527.282441 eV Core-core repulsion = 25871.475966 eV Total energy + Delta-G solvation = -4655.806475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.42012 -48.05644 -47.72985 -41.37520 -40.01730 -37.96590 -36.48080 -34.54088 -33.39099 -31.09738 -30.47043 -29.58492 -28.42079 -26.58849 -24.72418 -23.23154 -22.86107 -21.77957 -21.14251 -20.91815 -19.68244 -18.87885 -18.76153 -18.61569 -17.92488 -17.50144 -17.00377 -16.76728 -16.46800 -16.04375 -15.56315 -15.08202 -14.95931 -14.88345 -14.71225 -14.54165 -14.46117 -14.31171 -14.16843 -14.07782 -13.99480 -13.81189 -13.67732 -13.29786 -13.14799 -13.02270 -12.73121 -12.65045 -12.27903 -12.20225 -12.17191 -12.01493 -11.82958 -11.77421 -11.55394 -11.38648 -11.29761 -10.70335 -10.20965 -9.54831 -9.43012 -8.21470 -6.52790 1.44997 1.47194 1.52726 1.62262 2.06856 2.36227 2.54092 2.89754 2.94047 3.07346 3.39135 3.65566 3.77057 3.77818 3.86590 3.98551 4.03820 4.15736 4.17278 4.25779 4.38589 4.41091 4.59631 4.65304 4.71209 4.77231 4.83334 4.87369 4.95508 4.96191 5.01839 5.11364 5.14847 5.25600 5.25969 5.35654 5.40983 5.55151 5.64520 5.90992 6.06072 6.09215 6.52637 7.01392 7.17625 7.57577 8.71847 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022910 B = 0.002822 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.860917 B = 9920.623662 C =10433.129206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.560 4.560 8 H 0.093 0.907 9 C 0.271 3.729 10 H 0.045 0.955 11 N -0.716 5.716 12 C 0.711 3.289 13 O -0.630 6.630 14 N -0.638 5.638 15 C 0.092 3.908 16 C -0.104 4.104 17 C 0.072 3.928 18 H 0.061 0.939 19 N -0.515 5.515 20 C 0.026 3.974 21 C -0.120 4.120 22 C -0.129 4.129 23 C 0.036 3.964 24 C 0.137 3.863 25 C 0.413 3.587 26 F -0.203 7.203 27 F -0.150 7.150 28 F -0.220 7.220 29 H 0.269 0.731 30 H 0.408 0.592 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.055 0.945 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.624 -17.814 -2.862 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.597 4.597 8 H 0.111 0.889 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.370 5.370 12 C 0.413 3.587 13 O -0.510 6.510 14 N -0.377 5.377 15 C -0.030 4.030 16 C -0.142 4.142 17 C -0.038 4.038 18 H 0.078 0.922 19 N -0.240 5.240 20 C -0.102 4.102 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.092 4.092 24 C 0.013 3.987 25 C 0.356 3.644 26 F -0.185 7.185 27 F -0.131 7.131 28 F -0.202 7.202 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.404 -17.885 -2.637 22.505 hybrid contribution -0.024 1.276 -0.307 1.312 sum 13.379 -16.609 -2.943 21.530 Atomic orbital electron populations 1.70550 1.07563 1.28159 1.44658 1.26034 0.95922 1.03759 0.93407 0.85068 0.79147 0.77200 0.77633 1.17711 1.20307 1.20636 1.21240 0.94538 0.88129 1.55792 0.88926 1.19205 0.88391 0.86528 0.89576 0.93736 1.44973 1.17329 1.08893 1.65777 1.15746 0.83482 0.80485 0.78981 1.90876 1.21586 1.83472 1.55115 1.47564 1.14141 1.10156 1.65816 1.22379 0.80586 0.99993 1.00045 1.22608 0.99557 0.93091 0.98966 1.22829 0.94013 0.88415 0.98501 0.92158 1.64745 1.08690 1.04454 1.46148 1.23313 0.97851 0.95900 0.93099 1.22461 0.95602 0.95126 1.02607 1.22411 0.96187 0.97315 1.00756 1.22920 0.89731 0.95939 1.00589 1.21946 0.97480 0.80769 0.98492 1.23353 0.80887 0.72328 0.87831 1.92978 1.74110 1.96148 1.55229 1.93374 1.68956 1.54463 1.96318 1.93066 1.81590 1.48548 1.97018 0.92120 0.75521 0.90630 0.90168 0.89056 0.87414 0.90776 0.93793 0.90018 0.90803 0.90744 0.89972 0.93168 0.89386 0.92664 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.22 9.50 21.45 0.20 -49.02 16 2 C 0.01 0.73 5.20 84.65 0.44 1.17 16 3 Si 0.99 40.67 29.54 68.60 2.03 42.70 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.56 -28.76 8.46 25.60 0.22 -28.55 16 8 H 0.09 4.36 7.74 -2.91 -0.02 4.34 16 9 C 0.27 14.13 2.21 44.24 0.10 14.23 16 10 H 0.04 2.69 7.58 -2.39 -0.02 2.67 16 11 N -0.72 -30.94 4.95 -461.40 -2.28 -33.22 16 12 C 0.71 30.95 8.02 179.05 1.44 32.38 16 13 O -0.63 -33.24 15.17 -3.98 -0.06 -33.30 16 14 N -0.64 -20.64 3.34 -828.59 -2.77 -23.40 16 15 C 0.09 2.03 6.18 86.64 0.54 2.56 16 16 C -0.10 -1.66 5.99 31.78 0.19 -1.47 16 17 C 0.07 1.41 2.36 46.30 0.11 1.52 16 18 H 0.06 1.19 8.07 -2.39 -0.02 1.17 16 19 N -0.52 -8.93 5.15 -849.81 -4.37 -13.30 16 20 C 0.03 0.44 5.99 86.65 0.52 0.96 16 21 C -0.12 -1.47 7.06 31.80 0.22 -1.25 16 22 C -0.13 -1.32 6.93 31.47 0.22 -1.10 16 23 C 0.04 0.44 6.11 86.45 0.53 0.97 16 24 C 0.14 3.85 5.94 86.85 0.52 4.37 16 25 C 0.41 22.23 2.81 71.98 0.20 22.44 16 26 F -0.20 -10.25 16.94 44.97 0.76 -9.48 16 27 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 28 F -0.22 -12.04 15.68 44.97 0.71 -11.34 16 29 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.41 14.92 7.52 -92.71 -0.70 14.22 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 36 H 0.04 0.76 8.01 -2.39 -0.02 0.74 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.05 0.59 7.74 -2.39 -0.02 0.57 16 42 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.05 1.74 8.04 -2.39 -0.02 1.73 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.13 360.28 0.35 -68.78 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.32 Total: 21.47 kcal Atomic # 6 Polarization: 42.99 SS G_CDS: 5.23 Total: 48.22 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -9.22 Total: -118.94 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.06 Total: -33.30 kcal Atomic # 9 Polarization: -30.98 SS G_CDS: 2.05 Total: -28.93 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -69.13 0.35 -68.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.089 kcal (2) G-P(sol) polarization free energy of solvation -69.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds