Wall clock time and date at job start Tue Mar 31 2020 18:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 12 12 C 1.34780 * 120.00170 * 155.00354 * 11 9 7 13 13 O 1.21584 * 119.99640 * 359.97438 * 12 11 9 14 14 N 1.34778 * 120.00078 * 180.02562 * 12 11 9 15 15 C 1.47019 * 125.65102 * 359.68466 * 14 12 11 16 16 C 1.54328 * 107.26930 * 178.85409 * 15 14 12 17 17 C 1.55166 * 103.01712 * 338.13869 * 16 15 14 18 18 H 1.08993 * 111.00220 * 277.23438 * 17 16 15 19 19 N 1.46898 * 111.00088 * 153.38273 * 17 16 15 20 20 C 1.48529 * 111.00300 * 63.95586 * 19 17 16 21 21 C 1.54939 * 103.22875 * 159.72185 * 20 19 17 22 22 C 1.54594 * 102.91832 * 322.58163 * 21 20 19 23 23 C 1.47905 * 111.00054 * 181.35067 * 19 17 16 24 24 C 1.47426 * 125.64577 * 179.97438 * 14 12 11 25 25 C 1.53000 * 109.47245 * 59.72060 * 9 7 2 26 26 F 1.39898 * 109.47151 * 59.99989 * 25 9 7 27 27 F 1.39899 * 109.47223 * 180.02562 * 25 9 7 28 28 F 1.39909 * 109.47130 * 300.00212 * 25 9 7 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00109 * 334.99085 * 11 9 7 31 31 H 1.09003 * 109.88267 * 298.40102 * 15 14 12 32 32 H 1.09003 * 109.88340 * 59.56327 * 15 14 12 33 33 H 1.08994 * 110.84934 * 219.67436 * 16 15 14 34 34 H 1.08996 * 110.67448 * 96.51964 * 16 15 14 35 35 H 1.09007 * 110.66399 * 278.15271 * 20 19 17 36 36 H 1.09003 * 110.67093 * 41.28279 * 20 19 17 37 37 H 1.09004 * 110.72303 * 204.23013 * 21 20 19 38 38 H 1.08997 * 110.72433 * 80.94198 * 21 20 19 39 39 H 1.08999 * 110.31390 * 263.04200 * 22 21 20 40 40 H 1.09006 * 110.30502 * 140.87629 * 22 21 20 41 41 H 1.09004 * 109.91542 * 333.51177 * 23 19 17 42 42 H 1.09004 * 109.91669 * 94.60243 * 23 19 17 43 43 H 1.09001 * 110.36685 * 322.92671 * 24 14 12 44 44 H 1.09003 * 110.36348 * 85.14028 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 2.2028 -3.6127 -0.0102 12 6 1.8366 -4.8145 0.4776 13 8 0.7163 -4.9744 0.9221 14 7 2.7126 -5.8388 0.4736 15 6 4.0906 -5.7859 -0.0363 16 6 4.7175 -7.1774 0.1926 17 6 3.8408 -7.7737 1.3255 18 1 4.1729 -7.4225 2.3024 19 7 3.8355 -9.2416 1.2699 20 6 5.1942 -9.7886 1.5163 21 6 4.9155 -11.2526 1.9402 22 6 3.6255 -11.1288 2.7830 23 6 2.9740 -9.8091 2.3298 24 6 2.4458 -7.1995 0.9743 25 6 0.3714 -2.5747 -1.2550 26 9 1.1757 -2.4955 -2.3969 27 9 -0.3286 -3.7859 -1.2602 28 9 -0.5377 -1.5112 -1.2503 29 1 -0.4850 0.8401 -0.0004 30 1 3.0967 -3.4851 -0.3647 31 1 4.0832 -5.5510 -1.1007 32 1 4.6585 -5.0314 0.5080 33 1 5.7549 -7.0873 0.5147 34 1 4.6467 -7.7845 -0.7098 35 1 5.7919 -9.7590 0.6052 36 1 5.6887 -9.2429 2.3199 37 1 5.7351 -11.6418 2.5444 38 1 4.7465 -11.8817 1.0663 39 1 3.8696 -11.0852 3.8444 40 1 2.9598 -11.9681 2.5813 41 1 2.9140 -9.1169 3.1697 42 1 1.9764 -10.0005 1.9346 43 1 1.8169 -7.1599 1.8637 44 1 1.9698 -7.8019 0.2005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932917409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:06 Heat of formation + Delta-G solvation = -151.656953 kcal Electronic energy + Delta-G solvation = -30527.277810 eV Core-core repulsion = 25872.390996 eV Total energy + Delta-G solvation = -4654.886813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.28102 -45.93380 -45.55142 -40.13499 -38.92329 -36.83075 -34.58378 -32.81201 -32.20607 -30.15806 -29.21826 -28.50739 -27.20829 -24.52968 -23.46030 -22.18946 -21.42132 -20.87112 -20.31411 -19.38034 -18.20142 -16.95964 -16.81859 -16.73639 -16.52935 -16.11874 -15.80284 -15.18360 -14.84161 -14.65512 -14.47050 -14.15931 -13.69809 -13.34747 -13.27089 -12.89493 -12.81901 -12.59880 -12.51319 -12.44335 -12.33598 -12.26600 -12.22390 -11.91412 -11.76343 -11.62951 -11.50889 -11.32353 -11.15180 -11.00293 -10.95987 -10.84972 -10.81590 -10.76280 -10.37691 -9.65103 -9.51685 -8.72102 -8.69791 -8.44976 -8.05712 -6.21139 -4.45151 2.95427 3.20783 3.25710 3.27675 3.69261 3.82370 4.15219 4.20842 4.35194 4.50918 4.58171 4.64307 4.66470 4.76911 4.93431 4.95894 4.99106 5.17914 5.21891 5.30964 5.38411 5.50117 5.52569 5.60556 5.67356 5.69503 5.76643 5.80005 5.88825 5.93090 5.93541 5.96744 5.98943 6.25080 6.44464 6.58733 6.81834 6.93600 7.25957 7.42953 7.64525 7.70738 8.51071 8.63973 9.16391 9.27555 10.70251 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002815 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.239083 B = 9943.343532 C =10428.373296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.723 5.723 12 C 0.718 3.282 13 O -0.581 6.581 14 N -0.641 5.641 15 C 0.101 3.899 16 C -0.118 4.118 17 C 0.059 3.941 18 H 0.059 0.941 19 N -0.506 5.506 20 C 0.036 3.964 21 C -0.124 4.124 22 C -0.131 4.131 23 C 0.032 3.968 24 C 0.140 3.860 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.216 7.216 28 F -0.137 7.137 29 H 0.269 0.731 30 H 0.394 0.606 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 -17.227 2.840 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.102 0.898 11 N -0.376 5.376 12 C 0.420 3.580 13 O -0.458 6.458 14 N -0.382 5.382 15 C -0.023 4.023 16 C -0.157 4.157 17 C -0.050 4.050 18 H 0.077 0.923 19 N -0.231 5.231 20 C -0.092 4.092 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.095 4.095 24 C 0.016 3.984 25 C 0.359 3.641 26 F -0.192 7.192 27 F -0.198 7.198 28 F -0.118 7.118 29 H 0.079 0.921 30 H 0.228 0.772 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.234 -17.234 2.637 20.216 hybrid contribution 0.986 1.188 0.279 1.568 sum 11.220 -16.046 2.916 19.795 Atomic orbital electron populations 1.70406 1.05839 1.27433 1.43545 1.25078 0.95155 1.00054 0.94107 0.86270 0.79327 0.81341 0.78867 1.19841 1.20867 1.19815 1.20836 0.93722 0.88122 1.56260 0.90598 1.19601 0.88254 0.84897 0.91593 0.89751 1.45262 1.17394 1.09314 1.65602 1.15561 0.83379 0.79811 0.79260 1.90919 1.19158 1.82604 1.53084 1.47442 1.13220 1.10635 1.66927 1.21938 0.83129 0.97654 0.99535 1.22627 0.98572 0.95171 0.99284 1.22994 0.96496 0.87517 0.98033 0.92265 1.64744 1.07916 1.05292 1.45149 1.23219 0.90898 0.94662 1.00415 1.22479 0.97264 0.96461 0.99980 1.22401 0.97226 0.97724 0.99598 1.22899 0.98132 0.95354 0.93156 1.21835 0.95167 0.81739 0.99674 1.23181 0.80924 0.72814 0.87174 1.92980 1.74453 1.96167 1.55628 1.93075 1.81409 1.48364 1.96973 1.93404 1.68443 1.53813 1.96186 0.92067 0.77243 0.91370 0.91585 0.90396 0.89528 0.89844 0.93698 0.91136 0.90666 0.91575 0.90932 0.93483 0.89917 0.90816 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.26 9.49 55.43 0.53 -22.74 16 2 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.55 -14.29 8.47 -34.44 -0.29 -14.58 16 8 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 9 C 0.26 6.72 2.21 -69.09 -0.15 6.57 16 10 H 0.08 2.42 7.58 -51.93 -0.39 2.03 16 11 N -0.72 -15.57 4.95 -59.82 -0.30 -15.87 16 12 C 0.72 15.34 8.02 -86.91 -0.70 14.64 16 13 O -0.58 -14.70 15.17 5.29 0.08 -14.62 16 14 N -0.64 -10.48 3.33 -176.24 -0.59 -11.07 16 15 C 0.10 1.23 6.15 -3.06 -0.02 1.21 16 16 C -0.12 -1.12 5.92 -24.89 -0.15 -1.26 16 17 C 0.06 0.63 2.37 -65.57 -0.16 0.47 16 18 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 19 N -0.51 -4.82 5.15 -219.95 -1.13 -5.95 16 20 C 0.04 0.27 5.95 -1.90 -0.01 0.26 16 21 C -0.12 -0.80 7.06 -24.87 -0.18 -0.98 16 22 C -0.13 -0.91 6.93 -25.38 -0.18 -1.09 16 23 C 0.03 0.29 6.15 -2.76 -0.02 0.27 16 24 C 0.14 1.97 6.00 -2.54 -0.02 1.95 16 25 C 0.42 10.99 2.81 37.16 0.10 11.10 16 26 F -0.21 -5.34 16.94 2.25 0.04 -5.30 16 27 F -0.22 -5.75 15.68 2.25 0.04 -5.72 16 28 F -0.14 -3.88 12.90 2.25 0.03 -3.85 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 7.40 7.52 -40.82 -0.31 7.09 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.04 0.33 8.02 -51.93 -0.42 -0.08 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.43 7.72 -51.93 -0.40 0.03 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -31.33 360.19 -9.29 -40.61 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.54 Total: 3.73 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: -1.85 Total: 20.18 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -1.49 Total: -55.63 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.08 Total: -14.62 kcal Atomic # 9 Polarization: -14.97 SS G_CDS: 0.10 Total: -14.87 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.33 -9.29 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.044 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds