Wall clock time and date at job start Tue Mar 31 2020 18:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 12 12 C 1.34780 * 120.00170 * 155.00354 * 11 9 7 13 13 O 1.21584 * 119.99640 * 359.97438 * 12 11 9 14 14 N 1.34778 * 120.00078 * 180.02562 * 12 11 9 15 15 C 1.47019 * 125.65102 * 359.68466 * 14 12 11 16 16 C 1.54328 * 107.26930 * 178.85409 * 15 14 12 17 17 C 1.55166 * 103.01712 * 338.13869 * 16 15 14 18 18 H 1.08993 * 111.00220 * 277.23438 * 17 16 15 19 19 N 1.46898 * 111.00088 * 153.38273 * 17 16 15 20 20 C 1.48529 * 111.00300 * 63.95586 * 19 17 16 21 21 C 1.54939 * 103.22875 * 159.72185 * 20 19 17 22 22 C 1.54594 * 102.91832 * 322.58163 * 21 20 19 23 23 C 1.47905 * 111.00054 * 181.35067 * 19 17 16 24 24 C 1.47426 * 125.64577 * 179.97438 * 14 12 11 25 25 C 1.53000 * 109.47245 * 59.72060 * 9 7 2 26 26 F 1.39898 * 109.47151 * 59.99989 * 25 9 7 27 27 F 1.39899 * 109.47223 * 180.02562 * 25 9 7 28 28 F 1.39909 * 109.47130 * 300.00212 * 25 9 7 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00109 * 334.99085 * 11 9 7 31 31 H 1.09003 * 109.88267 * 298.40102 * 15 14 12 32 32 H 1.09003 * 109.88340 * 59.56327 * 15 14 12 33 33 H 1.08994 * 110.84934 * 219.67436 * 16 15 14 34 34 H 1.08996 * 110.67448 * 96.51964 * 16 15 14 35 35 H 1.09007 * 110.66399 * 278.15271 * 20 19 17 36 36 H 1.09003 * 110.67093 * 41.28279 * 20 19 17 37 37 H 1.09004 * 110.72303 * 204.23013 * 21 20 19 38 38 H 1.08997 * 110.72433 * 80.94198 * 21 20 19 39 39 H 1.08999 * 110.31390 * 263.04200 * 22 21 20 40 40 H 1.09006 * 110.30502 * 140.87629 * 22 21 20 41 41 H 1.09004 * 109.91542 * 333.51177 * 23 19 17 42 42 H 1.09004 * 109.91669 * 94.60243 * 23 19 17 43 43 H 1.09001 * 110.36685 * 322.92671 * 24 14 12 44 44 H 1.09003 * 110.36348 * 85.14028 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 2.2028 -3.6127 -0.0102 12 6 1.8366 -4.8145 0.4776 13 8 0.7163 -4.9744 0.9221 14 7 2.7126 -5.8388 0.4736 15 6 4.0906 -5.7859 -0.0363 16 6 4.7175 -7.1774 0.1926 17 6 3.8408 -7.7737 1.3255 18 1 4.1729 -7.4225 2.3024 19 7 3.8355 -9.2416 1.2699 20 6 5.1942 -9.7886 1.5163 21 6 4.9155 -11.2526 1.9402 22 6 3.6255 -11.1288 2.7830 23 6 2.9740 -9.8091 2.3298 24 6 2.4458 -7.1995 0.9743 25 6 0.3714 -2.5747 -1.2550 26 9 1.1757 -2.4955 -2.3969 27 9 -0.3286 -3.7859 -1.2602 28 9 -0.5377 -1.5112 -1.2503 29 1 -0.4850 0.8401 -0.0004 30 1 3.0967 -3.4851 -0.3647 31 1 4.0832 -5.5510 -1.1007 32 1 4.6585 -5.0314 0.5080 33 1 5.7549 -7.0873 0.5147 34 1 4.6467 -7.7845 -0.7098 35 1 5.7919 -9.7590 0.6052 36 1 5.6887 -9.2429 2.3199 37 1 5.7351 -11.6418 2.5444 38 1 4.7465 -11.8817 1.0663 39 1 3.8696 -11.0852 3.8444 40 1 2.9598 -11.9681 2.5813 41 1 2.9140 -9.1169 3.1697 42 1 1.9764 -10.0005 1.9346 43 1 1.8169 -7.1599 1.8637 44 1 1.9698 -7.8019 0.2005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932917409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:05 Heat of formation + Delta-G solvation = -172.713232 kcal Electronic energy + Delta-G solvation = -30528.190878 eV Core-core repulsion = 25872.390996 eV Total energy + Delta-G solvation = -4655.799882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.42132 -48.05841 -47.72907 -41.39579 -40.02009 -37.98583 -36.48441 -34.54453 -33.40021 -31.10668 -30.46496 -29.58282 -28.42425 -26.58498 -24.73733 -23.23548 -22.88422 -21.69804 -21.20556 -20.90857 -19.70844 -18.88059 -18.76792 -18.61680 -17.92674 -17.50331 -16.98290 -16.74338 -16.48381 -16.03031 -15.61990 -15.10412 -14.97335 -14.88170 -14.67689 -14.54410 -14.46313 -14.30772 -14.21653 -14.16144 -13.99323 -13.80035 -13.44953 -13.28909 -13.27022 -13.02387 -12.76189 -12.60158 -12.27284 -12.19368 -12.18782 -12.02873 -11.83364 -11.75878 -11.60311 -11.39327 -11.30208 -10.67789 -10.21244 -9.55449 -9.43070 -8.20995 -6.52729 1.45019 1.49892 1.52476 1.59924 2.06282 2.36537 2.53996 2.89618 2.94030 3.08358 3.38861 3.65085 3.77157 3.77704 3.86464 3.99529 4.03133 4.13246 4.17393 4.25592 4.37510 4.43244 4.60268 4.66484 4.70295 4.76062 4.83157 4.87816 4.94452 4.98263 5.01688 5.11417 5.14951 5.25786 5.26852 5.34732 5.40537 5.55007 5.64181 5.91193 6.05796 6.09166 6.51997 7.01364 7.17525 7.57039 8.71649 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002815 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.239083 B = 9943.343532 C =10428.373296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.563 4.563 8 H 0.093 0.907 9 C 0.272 3.728 10 H 0.045 0.955 11 N -0.716 5.716 12 C 0.711 3.289 13 O -0.630 6.630 14 N -0.637 5.637 15 C 0.092 3.908 16 C -0.104 4.104 17 C 0.072 3.928 18 H 0.061 0.939 19 N -0.516 5.516 20 C 0.034 3.966 21 C -0.120 4.120 22 C -0.129 4.129 23 C 0.028 3.972 24 C 0.136 3.864 25 C 0.412 3.588 26 F -0.203 7.203 27 F -0.220 7.220 28 F -0.149 7.149 29 H 0.269 0.731 30 H 0.409 0.591 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.895 -17.790 2.656 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.599 4.599 8 H 0.111 0.889 9 C 0.164 3.836 10 H 0.062 0.938 11 N -0.370 5.370 12 C 0.413 3.587 13 O -0.510 6.510 14 N -0.376 5.376 15 C -0.031 4.031 16 C -0.142 4.142 17 C -0.037 4.037 18 H 0.078 0.922 19 N -0.241 5.241 20 C -0.093 4.093 21 C -0.158 4.158 22 C -0.167 4.167 23 C -0.100 4.100 24 C 0.012 3.988 25 C 0.356 3.644 26 F -0.185 7.185 27 F -0.202 7.202 28 F -0.131 7.131 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.639 -17.854 2.441 22.600 hybrid contribution -0.080 1.260 0.334 1.306 sum 13.559 -16.594 2.775 21.608 Atomic orbital electron populations 1.70543 1.07568 1.28288 1.44474 1.26034 0.95917 1.03754 0.93383 0.85174 0.77973 0.76518 0.79431 1.18906 1.20983 1.18600 1.21184 0.94544 0.88166 1.56039 0.88925 1.19192 0.88374 0.86511 0.89558 0.93757 1.44973 1.17368 1.08694 1.65926 1.15744 0.83470 0.80500 0.78982 1.90876 1.21608 1.83506 1.55055 1.47445 1.14251 1.10037 1.65848 1.22297 0.80739 1.00073 0.99951 1.22614 0.99552 0.93026 0.98964 1.22821 0.93960 0.88403 0.98551 0.92165 1.64740 1.09434 1.04330 1.45550 1.23320 0.89645 0.95103 1.01188 1.22488 0.97350 0.95871 1.00081 1.22397 0.97545 0.96567 1.00162 1.22929 0.97940 0.96377 0.92778 1.21955 0.97546 0.80710 0.98540 1.23370 0.80902 0.72333 0.87822 1.92978 1.74136 1.96122 1.55244 1.93063 1.81589 1.48553 1.97028 1.93380 1.68977 1.54423 1.96295 0.92099 0.75510 0.90708 0.90231 0.87273 0.88982 0.88768 0.93157 0.89465 0.90694 0.90799 0.90506 0.94241 0.91083 0.92792 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.25 9.49 21.45 0.20 -49.05 16 2 C 0.01 0.75 5.20 84.66 0.44 1.19 16 3 Si 0.99 40.63 29.54 68.60 2.03 42.66 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.56 -28.93 8.47 25.60 0.22 -28.71 16 8 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 9 C 0.27 14.19 2.21 44.25 0.10 14.29 16 10 H 0.04 2.68 7.58 -2.38 -0.02 2.66 16 11 N -0.72 -31.00 4.95 -461.42 -2.28 -33.28 16 12 C 0.71 31.04 8.02 179.05 1.44 32.47 16 13 O -0.63 -33.34 15.17 -3.98 -0.06 -33.40 16 14 N -0.64 -20.68 3.33 -829.77 -2.76 -23.44 16 15 C 0.09 2.02 6.15 86.73 0.53 2.55 16 16 C -0.10 -1.63 5.92 31.79 0.19 -1.44 16 17 C 0.07 1.42 2.37 46.30 0.11 1.53 16 18 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 19 N -0.52 -8.95 5.15 -849.79 -4.37 -13.32 16 20 C 0.03 0.42 5.95 86.65 0.52 0.93 16 21 C -0.12 -1.23 7.06 31.80 0.22 -1.01 16 22 C -0.13 -1.57 6.93 31.47 0.22 -1.35 16 23 C 0.03 0.47 6.15 86.44 0.53 1.00 16 24 C 0.14 3.86 6.00 86.85 0.52 4.38 16 25 C 0.41 22.25 2.81 71.98 0.20 22.45 16 26 F -0.20 -10.27 16.94 44.97 0.76 -9.51 16 27 F -0.22 -12.07 15.68 44.97 0.70 -11.36 16 28 F -0.15 -8.67 12.90 44.97 0.58 -8.09 16 29 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 30 H 0.41 14.94 7.52 -92.71 -0.70 14.24 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 0.96 8.10 -2.38 -0.02 0.94 16 36 H 0.05 0.58 8.02 -2.39 -0.02 0.56 16 37 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.04 0.72 7.72 -2.39 -0.02 0.70 16 42 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.05 1.72 8.04 -2.39 -0.02 1.71 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -69.36 360.19 0.36 -69.00 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.32 Total: 21.49 kcal Atomic # 6 Polarization: 43.06 SS G_CDS: 5.24 Total: 48.30 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -9.21 Total: -119.08 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.06 Total: -33.40 kcal Atomic # 9 Polarization: -31.01 SS G_CDS: 2.05 Total: -28.97 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -69.36 0.36 -69.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.713 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds