Wall clock time and date at job start Tue Mar 31 2020 18:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99682 * 2 1 4 4 H 1.48496 * 109.47363 * 274.92995 * 3 2 1 5 5 H 1.48503 * 109.46922 * 34.92996 * 3 2 1 6 6 H 1.48494 * 109.47045 * 154.92773 * 3 2 1 7 7 C 1.37871 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00547 * 4.97335 * 7 2 1 9 9 C 1.50706 * 119.99811 * 184.98202 * 7 2 1 10 10 H 1.08998 * 109.46954 * 325.01210 * 9 7 2 11 11 N 1.46496 * 109.47454 * 85.01832 * 9 7 2 12 12 C 1.34783 * 119.99975 * 205.00266 * 11 9 7 13 13 O 1.21581 * 119.99944 * 5.18265 * 12 11 9 14 14 N 1.34776 * 119.99884 * 185.18419 * 12 11 9 15 15 C 1.47078 * 120.88101 * 355.00216 * 14 12 11 16 16 C 1.53238 * 108.52088 * 128.79332 * 15 14 12 17 17 N 1.46901 * 109.33871 * 53.82860 * 16 15 14 18 18 C 1.46896 * 110.99909 * 172.74289 * 17 16 15 19 19 C 1.53778 * 113.62123 * 274.13525 * 18 17 16 20 20 C 1.53946 * 87.02575 * 220.05119 * 19 18 17 21 21 C 1.53786 * 87.11158 * 25.36100 * 20 19 18 22 22 C 1.46894 * 111.26891 * 296.89775 * 17 16 15 23 23 C 1.47077 * 120.87905 * 174.98419 * 14 12 11 24 24 C 1.53003 * 109.47039 * 205.01691 * 9 7 2 25 25 F 1.39903 * 109.46885 * 304.87923 * 24 9 7 26 26 F 1.39902 * 109.47072 * 64.87722 * 24 9 7 27 27 F 1.39894 * 109.47211 * 184.88372 * 24 9 7 28 28 H 0.96996 * 120.00412 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00143 * 24.99466 * 11 9 7 30 30 H 1.09002 * 109.63290 * 9.08583 * 15 14 12 31 31 H 1.09007 * 109.63027 * 248.50715 * 15 14 12 32 32 H 1.09000 * 109.49309 * 173.78540 * 16 15 14 33 33 H 1.08995 * 109.49618 * 293.86741 * 16 15 14 34 34 H 1.09001 * 112.85110 * 45.33651 * 18 17 16 35 35 H 1.09003 * 113.61437 * 334.57198 * 19 18 17 36 36 H 1.08999 * 113.61363 * 105.46997 * 19 18 17 37 37 H 1.09002 * 113.53813 * 270.81131 * 20 19 18 38 38 H 1.08994 * 113.67039 * 139.93403 * 20 19 18 39 39 H 1.08999 * 113.61586 * 220.09114 * 21 20 19 40 40 H 1.08998 * 113.61123 * 89.19158 * 21 20 19 41 41 H 1.09002 * 109.49493 * 303.13882 * 22 17 16 42 42 H 1.09007 * 109.51789 * 183.07684 * 22 17 16 43 43 H 1.08998 * 109.62953 * 350.91222 * 23 14 12 44 44 H 1.08993 * 109.63200 * 111.49408 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3924 2.1067 -1.3948 5 1 1.5024 2.6204 0.8017 6 1 3.5948 1.4125 0.5933 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0820 9 6 3.5073 -1.1964 0.1128 10 1 3.9125 -0.3300 -0.4100 11 7 3.8906 -1.1377 1.5255 12 6 5.0904 -0.6346 1.8779 13 8 5.8151 -0.1435 1.0343 14 7 5.4866 -0.6760 3.1655 15 6 4.5832 -1.1653 4.2179 16 6 5.3208 -2.2306 5.0360 17 7 6.5943 -1.6789 5.5175 18 6 7.2520 -2.6068 6.4471 19 6 6.7816 -2.4567 7.9035 20 6 8.2513 -2.6592 8.3147 21 6 8.6328 -2.1258 6.9237 22 6 7.4829 -1.3355 4.3994 23 6 6.8340 -0.2335 3.5552 24 6 4.0640 -2.4764 -0.5139 25 9 3.4599 -3.5885 0.0825 26 9 3.7939 -2.4792 -1.8866 27 9 5.4469 -2.5320 -0.3105 28 1 -0.4850 0.8400 0.0004 29 1 3.2810 -1.4608 2.2073 30 1 3.6945 -1.6031 3.7633 31 1 4.2960 -0.3384 4.8676 32 1 4.7070 -2.5251 5.8873 33 1 5.5152 -3.1007 4.4090 34 1 7.2476 -3.6370 6.0908 35 1 6.3955 -1.4646 8.1375 36 1 6.1205 -3.2580 8.2336 37 1 8.5197 -3.7041 8.4703 38 1 8.5698 -2.0131 9.1326 39 1 9.4640 -2.6604 6.4639 40 1 8.7538 -1.0431 6.8894 41 1 7.6474 -2.2181 3.7812 42 1 8.4375 -0.9811 4.7885 43 1 7.4334 -0.0553 2.6624 44 1 6.7633 0.6828 4.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932918089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:53 Heat of formation + Delta-G solvation = -147.012897 kcal Electronic energy + Delta-G solvation = -31058.128039 eV Core-core repulsion = 26403.442607 eV Total energy + Delta-G solvation = -4654.685432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.05896 -46.57370 -46.55024 -40.24077 -39.17013 -36.91040 -34.81304 -33.54651 -32.51374 -31.18276 -29.08739 -27.07671 -26.00782 -24.96094 -23.91195 -23.40472 -21.79105 -20.80680 -19.57842 -19.25570 -18.50321 -17.54617 -17.49463 -16.76282 -16.49261 -16.14947 -15.82927 -15.53918 -15.02923 -14.95634 -14.56847 -14.23978 -13.93606 -13.52484 -13.45929 -13.36345 -13.11835 -13.00446 -12.86101 -12.75705 -12.68061 -12.65965 -12.65216 -12.38644 -11.92292 -11.81469 -11.60011 -11.30785 -11.29280 -11.12029 -10.87572 -10.67806 -10.62240 -10.42571 -10.06790 -9.80244 -9.54592 -8.96564 -8.69484 -8.44486 -8.08599 -6.51957 -4.67185 2.97493 3.17281 3.24542 3.39427 3.60077 3.76322 3.99269 4.14846 4.26495 4.29736 4.43565 4.59104 4.67706 4.84144 4.93204 4.99721 5.17750 5.19989 5.22531 5.26447 5.26599 5.36235 5.39819 5.43895 5.54092 5.58404 5.61384 5.66539 5.71631 5.83407 5.88258 5.97880 6.07939 6.13459 6.33559 6.72014 6.89180 6.90906 6.96655 7.23804 7.44266 7.91744 8.53463 8.60661 9.04301 9.18721 10.55863 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.003629 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.328543 B = 7714.228639 C = 8245.638653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.101 3.899 3 Si 0.865 3.135 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.538 4.538 8 H 0.094 0.906 9 C 0.220 3.780 10 H 0.090 0.910 11 N -0.729 5.729 12 C 0.699 3.301 13 O -0.592 6.592 14 N -0.638 5.638 15 C 0.117 3.883 16 C 0.043 3.957 17 N -0.525 5.525 18 C 0.052 3.948 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.133 4.133 22 C 0.041 3.959 23 C 0.137 3.863 24 C 0.439 3.561 25 F -0.191 7.191 26 F -0.185 7.185 27 F -0.196 7.196 28 H 0.275 0.725 29 H 0.394 0.606 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.412 -3.768 14.680 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.109 4.109 3 Si 0.689 3.311 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.116 3.884 10 H 0.108 0.892 11 N -0.387 5.387 12 C 0.401 3.599 13 O -0.470 6.470 14 N -0.377 5.377 15 C -0.007 4.007 16 C -0.086 4.086 17 N -0.250 5.250 18 C -0.056 4.056 19 C -0.163 4.163 20 C -0.181 4.181 21 C -0.170 4.170 22 C -0.087 4.087 23 C 0.013 3.987 24 C 0.383 3.617 25 F -0.173 7.173 26 F -0.167 7.167 27 F -0.178 7.178 28 H 0.085 0.915 29 H 0.232 0.768 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.655 -2.912 14.249 19.279 hybrid contribution 0.227 -0.386 -0.180 0.483 sum 12.882 -3.298 14.069 19.359 Atomic orbital electron populations 1.69870 1.06473 1.28342 1.44599 1.24963 0.94757 0.99365 0.91854 0.86949 0.81844 0.82720 0.79572 1.19463 1.20684 1.16690 1.20793 0.86454 0.96414 1.53877 0.88828 1.19947 0.97662 0.90146 0.80646 0.89190 1.46972 1.16193 1.65785 1.09706 1.16304 0.82741 0.79045 0.81797 1.90846 1.55541 1.51387 1.49235 1.47395 1.15233 1.69463 1.05588 1.21669 0.92545 0.97000 0.89529 1.22459 0.91489 0.96109 0.98558 1.62194 1.04199 1.42262 1.16376 1.23191 0.95214 0.94549 0.92639 1.22984 0.96173 1.02589 0.94511 1.22749 0.97001 1.01164 0.97146 1.23018 0.95892 1.01785 0.96346 1.22504 0.96210 0.98389 0.91617 1.21441 0.82794 0.95798 0.98696 1.21678 0.74781 0.88466 0.76756 1.93071 1.83457 1.56993 1.83742 1.93097 1.93684 1.96906 1.32992 1.93126 1.32885 1.97001 1.94788 0.91527 0.76783 0.89594 0.90840 0.89691 0.94272 0.91781 0.89138 0.91829 0.90424 0.91172 0.91739 0.89182 0.94483 0.89669 0.88754 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.62 13.96 55.43 0.77 -22.84 16 2 C 0.10 2.64 5.47 -17.82 -0.10 2.54 16 3 Si 0.86 20.33 27.19 -169.99 -4.62 15.71 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.24 -5.91 6.24 56.52 0.35 -5.55 16 7 C -0.54 -13.80 8.69 -34.44 -0.30 -14.10 16 8 H 0.09 2.59 7.66 -52.49 -0.40 2.19 16 9 C 0.22 5.16 1.40 -69.08 -0.10 5.06 16 10 H 0.09 2.26 5.09 -51.93 -0.26 2.00 16 11 N -0.73 -15.23 4.78 -59.81 -0.29 -15.52 16 12 C 0.70 14.43 7.38 -86.91 -0.64 13.79 16 13 O -0.59 -14.15 14.69 5.29 0.08 -14.07 16 14 N -0.64 -10.40 3.01 -178.19 -0.54 -10.94 16 15 C 0.12 1.53 6.59 -3.60 -0.02 1.50 16 16 C 0.04 0.48 5.59 -3.70 -0.02 0.46 16 17 N -0.53 -5.63 4.60 -225.37 -1.04 -6.67 16 18 C 0.05 0.47 3.25 -66.90 -0.22 0.26 16 19 C -0.12 -0.97 7.87 -25.83 -0.20 -1.18 16 20 C -0.14 -0.97 8.09 -25.83 -0.21 -1.18 16 21 C -0.13 -1.02 6.43 -25.91 -0.17 -1.19 16 22 C 0.04 0.47 5.42 -3.70 -0.02 0.45 16 23 C 0.14 1.91 6.58 -3.60 -0.02 1.88 16 24 C 0.44 9.95 2.83 37.16 0.11 10.06 16 25 F -0.19 -4.20 16.62 2.25 0.04 -4.16 16 26 F -0.19 -4.23 17.14 2.25 0.04 -4.19 16 27 F -0.20 -4.43 15.76 2.25 0.04 -4.39 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 7.47 6.09 -40.82 -0.25 7.22 16 30 H 0.09 1.12 5.64 -51.93 -0.29 0.83 16 31 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 32 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.72 7.71 -51.93 -0.40 0.32 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.82 6.58 -51.92 -0.34 0.48 16 43 H 0.09 1.45 7.10 -51.93 -0.37 1.09 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -29.77 357.43 -8.19 -37.97 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.15 Total: 5.36 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: -1.91 Total: 18.35 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -1.09 Total: -55.96 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 9 Polarization: -12.85 SS G_CDS: 0.11 Total: -12.74 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.62 Total: 15.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.77 -8.19 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.044 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds