Wall clock time and date at job start Tue Mar 31 2020 18:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99682 * 2 1 4 4 H 1.48496 * 109.47363 * 274.92995 * 3 2 1 5 5 H 1.48503 * 109.46922 * 34.92996 * 3 2 1 6 6 H 1.48494 * 109.47045 * 154.92773 * 3 2 1 7 7 C 1.37871 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00547 * 4.97335 * 7 2 1 9 9 C 1.50706 * 119.99811 * 184.98202 * 7 2 1 10 10 H 1.08998 * 109.46954 * 325.01210 * 9 7 2 11 11 N 1.46496 * 109.47454 * 85.01832 * 9 7 2 12 12 C 1.34783 * 119.99975 * 205.00266 * 11 9 7 13 13 O 1.21581 * 119.99944 * 5.18265 * 12 11 9 14 14 N 1.34776 * 119.99884 * 185.18419 * 12 11 9 15 15 C 1.47078 * 120.88101 * 355.00216 * 14 12 11 16 16 C 1.53238 * 108.52088 * 128.79332 * 15 14 12 17 17 N 1.46901 * 109.33871 * 53.82860 * 16 15 14 18 18 C 1.46896 * 110.99909 * 172.74289 * 17 16 15 19 19 C 1.53778 * 113.62123 * 274.13525 * 18 17 16 20 20 C 1.53946 * 87.02575 * 220.05119 * 19 18 17 21 21 C 1.53786 * 87.11158 * 25.36100 * 20 19 18 22 22 C 1.46894 * 111.26891 * 296.89775 * 17 16 15 23 23 C 1.47077 * 120.87905 * 174.98419 * 14 12 11 24 24 C 1.53003 * 109.47039 * 205.01691 * 9 7 2 25 25 F 1.39903 * 109.46885 * 304.87923 * 24 9 7 26 26 F 1.39902 * 109.47072 * 64.87722 * 24 9 7 27 27 F 1.39894 * 109.47211 * 184.88372 * 24 9 7 28 28 H 0.96996 * 120.00412 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00143 * 24.99466 * 11 9 7 30 30 H 1.09002 * 109.63290 * 9.08583 * 15 14 12 31 31 H 1.09007 * 109.63027 * 248.50715 * 15 14 12 32 32 H 1.09000 * 109.49309 * 173.78540 * 16 15 14 33 33 H 1.08995 * 109.49618 * 293.86741 * 16 15 14 34 34 H 1.09001 * 112.85110 * 45.33651 * 18 17 16 35 35 H 1.09003 * 113.61437 * 334.57198 * 19 18 17 36 36 H 1.08999 * 113.61363 * 105.46997 * 19 18 17 37 37 H 1.09002 * 113.53813 * 270.81131 * 20 19 18 38 38 H 1.08994 * 113.67039 * 139.93403 * 20 19 18 39 39 H 1.08999 * 113.61586 * 220.09114 * 21 20 19 40 40 H 1.08998 * 113.61123 * 89.19158 * 21 20 19 41 41 H 1.09002 * 109.49493 * 303.13882 * 22 17 16 42 42 H 1.09007 * 109.51789 * 183.07684 * 22 17 16 43 43 H 1.08998 * 109.62953 * 350.91222 * 23 14 12 44 44 H 1.08993 * 109.63200 * 111.49408 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3924 2.1067 -1.3948 5 1 1.5024 2.6204 0.8017 6 1 3.5948 1.4125 0.5933 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0820 9 6 3.5073 -1.1964 0.1128 10 1 3.9125 -0.3300 -0.4100 11 7 3.8906 -1.1377 1.5255 12 6 5.0904 -0.6346 1.8779 13 8 5.8151 -0.1435 1.0343 14 7 5.4866 -0.6760 3.1655 15 6 4.5832 -1.1653 4.2179 16 6 5.3208 -2.2306 5.0360 17 7 6.5943 -1.6789 5.5175 18 6 7.2520 -2.6068 6.4471 19 6 6.7816 -2.4567 7.9035 20 6 8.2513 -2.6592 8.3147 21 6 8.6328 -2.1258 6.9237 22 6 7.4829 -1.3355 4.3994 23 6 6.8340 -0.2335 3.5552 24 6 4.0640 -2.4764 -0.5139 25 9 3.4599 -3.5885 0.0825 26 9 3.7939 -2.4792 -1.8866 27 9 5.4469 -2.5320 -0.3105 28 1 -0.4850 0.8400 0.0004 29 1 3.2810 -1.4608 2.2073 30 1 3.6945 -1.6031 3.7633 31 1 4.2960 -0.3384 4.8676 32 1 4.7070 -2.5251 5.8873 33 1 5.5152 -3.1007 4.4090 34 1 7.2476 -3.6370 6.0908 35 1 6.3955 -1.4646 8.1375 36 1 6.1205 -3.2580 8.2336 37 1 8.5197 -3.7041 8.4703 38 1 8.5698 -2.0131 9.1326 39 1 9.4640 -2.6604 6.4639 40 1 8.7538 -1.0431 6.8894 41 1 7.6474 -2.2181 3.7812 42 1 8.4375 -0.9811 4.7885 43 1 7.4334 -0.0553 2.6624 44 1 6.7633 0.6828 4.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932918089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:52 Heat of formation + Delta-G solvation = -166.266305 kcal Electronic energy + Delta-G solvation = -31058.962930 eV Core-core repulsion = 26403.442607 eV Total energy + Delta-G solvation = -4655.520322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.90712 -48.42043 -48.39198 -41.49342 -40.21452 -38.02141 -36.61830 -34.82470 -34.31005 -32.31335 -30.77029 -28.19322 -26.92492 -26.66822 -24.74491 -24.43042 -23.33983 -22.25376 -20.82443 -20.22809 -20.04247 -19.34104 -19.12845 -18.54809 -18.39880 -17.36028 -17.03420 -16.51785 -16.23601 -16.13183 -15.92315 -15.57043 -15.35812 -15.27240 -15.15833 -14.89958 -14.81779 -14.60156 -14.55002 -14.51870 -14.27823 -13.93626 -13.62787 -13.49676 -13.26285 -13.02242 -12.70867 -12.58355 -12.54476 -12.27836 -12.20813 -11.94882 -11.84015 -11.61623 -11.34939 -11.22472 -11.04268 -10.97810 -10.24887 -9.67340 -9.26467 -8.55411 -6.73923 1.24089 1.33673 1.48305 1.57692 1.90565 2.18492 2.25606 2.67400 2.87901 3.03761 3.29127 3.34521 3.59244 3.61008 3.81277 3.88098 3.98500 4.01211 4.06538 4.20495 4.27799 4.34152 4.42256 4.52876 4.65741 4.73504 4.77227 4.83678 4.91317 4.94197 4.98688 5.03239 5.08987 5.14244 5.36640 5.47805 5.50454 5.53864 5.81312 5.97176 6.01227 6.19263 6.43547 6.99592 7.01999 7.57113 8.56451 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.003629 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.328543 B = 7714.228639 C = 8245.638653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.920 3.080 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.229 3.771 10 H 0.076 0.924 11 N -0.727 5.727 12 C 0.695 3.305 13 O -0.628 6.628 14 N -0.633 5.633 15 C 0.112 3.888 16 C 0.049 3.951 17 N -0.525 5.525 18 C 0.045 3.955 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.131 4.131 22 C 0.052 3.948 23 C 0.134 3.866 24 C 0.441 3.559 25 F -0.186 7.186 26 F -0.186 7.186 27 F -0.194 7.194 28 H 0.280 0.720 29 H 0.404 0.596 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.555 -3.573 16.823 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.123 3.877 10 H 0.094 0.906 11 N -0.385 5.385 12 C 0.397 3.603 13 O -0.509 6.509 14 N -0.371 5.371 15 C -0.011 4.011 16 C -0.080 4.080 17 N -0.249 5.249 18 C -0.063 4.063 19 C -0.159 4.159 20 C -0.173 4.173 21 C -0.168 4.168 22 C -0.077 4.077 23 C 0.011 3.989 24 C 0.385 3.615 25 F -0.168 7.168 26 F -0.168 7.168 27 F -0.176 7.176 28 H 0.090 0.910 29 H 0.244 0.756 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.126 0.874 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.800 -2.733 16.454 21.648 hybrid contribution -0.079 -0.515 -0.787 0.944 sum 13.721 -3.248 15.667 21.077 Atomic orbital electron populations 1.69927 1.07564 1.29339 1.46169 1.25463 0.95176 1.01647 0.91622 0.86103 0.80086 0.79990 0.79445 1.19395 1.19669 1.17904 1.20709 0.87393 0.95437 1.54068 0.91402 1.19620 0.96220 0.90048 0.81778 0.90604 1.46479 1.16936 1.66221 1.08852 1.16357 0.82128 0.78795 0.83008 1.90817 1.56351 1.52914 1.50813 1.47472 1.16511 1.68465 1.04641 1.21904 0.92184 0.98074 0.88930 1.22404 0.92041 0.94730 0.98788 1.62240 1.03951 1.42843 1.15913 1.23317 0.96272 0.93975 0.92710 1.22957 0.96976 1.02561 0.93368 1.22734 0.96027 1.01757 0.96825 1.23017 0.95155 1.01800 0.96862 1.22395 0.97028 0.96844 0.91415 1.21607 0.81419 0.97385 0.98535 1.21543 0.74858 0.88386 0.76670 1.93078 1.83395 1.56659 1.83652 1.93093 1.93704 1.96915 1.33099 1.93131 1.32664 1.96988 1.94774 0.90996 0.75630 0.89810 0.89390 0.87475 0.95640 0.92241 0.89522 0.91313 0.89713 0.90357 0.91372 0.89230 0.96095 0.87427 0.90539 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.35 13.96 21.45 0.30 -49.05 16 2 C 0.07 3.55 5.47 84.65 0.46 4.02 16 3 Si 0.92 42.09 27.19 68.60 1.87 43.95 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.26 -12.11 6.24 99.48 0.62 -11.49 16 7 C -0.54 -27.87 8.69 25.60 0.22 -27.64 16 8 H 0.07 3.83 7.66 -2.91 -0.02 3.81 16 9 C 0.23 10.76 1.40 44.25 0.06 10.82 16 10 H 0.08 3.82 5.09 -2.39 -0.01 3.81 16 11 N -0.73 -30.13 4.78 -461.41 -2.21 -32.33 16 12 C 0.70 28.40 7.38 179.05 1.32 29.72 16 13 O -0.63 -30.03 14.69 -3.97 -0.06 -30.09 16 14 N -0.63 -19.97 3.01 -835.94 -2.52 -22.49 16 15 C 0.11 2.73 6.59 86.35 0.57 3.30 16 16 C 0.05 1.00 5.59 86.38 0.48 1.49 16 17 N -0.52 -10.03 4.60 -866.94 -3.99 -14.02 16 18 C 0.05 0.71 3.25 45.44 0.15 0.85 16 19 C -0.12 -1.55 7.87 31.18 0.25 -1.31 16 20 C -0.14 -1.46 8.09 31.18 0.25 -1.21 16 21 C -0.13 -1.67 6.43 31.12 0.20 -1.47 16 22 C 0.05 1.10 5.42 86.39 0.47 1.57 16 23 C 0.13 3.56 6.58 86.35 0.57 4.13 16 24 C 0.44 19.98 2.83 71.98 0.20 20.18 16 25 F -0.19 -8.14 16.62 44.97 0.75 -7.39 16 26 F -0.19 -8.51 17.14 44.97 0.77 -7.74 16 27 F -0.19 -8.69 15.76 44.97 0.71 -7.99 16 28 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.40 15.12 6.09 -92.71 -0.56 14.56 16 30 H 0.08 2.07 5.64 -2.39 -0.01 2.06 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.93 16 32 H 0.11 1.74 8.09 -2.39 -0.02 1.72 16 33 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.18 7.71 -2.39 -0.02 1.16 16 41 H 0.02 0.51 8.14 -2.39 -0.02 0.50 16 42 H 0.11 1.81 6.58 -2.38 -0.02 1.79 16 43 H 0.08 2.33 7.10 -2.39 -0.02 2.32 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -63.08 357.43 1.21 -61.86 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.39 Total: 20.84 kcal Atomic # 6 Polarization: 39.23 SS G_CDS: 5.21 Total: 44.43 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -8.41 Total: -117.89 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 9 Polarization: -25.34 SS G_CDS: 2.23 Total: -23.11 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.87 Total: 43.95 kcal Total: -63.08 1.21 -61.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.404 kcal (2) G-P(sol) polarization free energy of solvation -63.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds