Wall clock time and date at job start Tue Mar 31 2020 18:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47196 * 240.00161 * 3 2 1 5 5 H 1.48499 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47334 * 120.00415 * 3 2 1 7 7 C 1.37883 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00014 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47230 * 299.99970 * 9 7 2 11 11 N 1.46507 * 109.47087 * 180.02562 * 9 7 2 12 12 C 1.34774 * 119.99814 * 154.72279 * 11 9 7 13 13 O 1.21584 * 120.00140 * 355.12758 * 12 11 9 14 14 N 1.34777 * 119.99513 * 175.13121 * 12 11 9 15 15 C 1.47082 * 120.87935 * 184.71787 * 14 12 11 16 16 C 1.53693 * 108.27774 * 128.74970 * 15 14 12 17 17 N 1.46902 * 109.25351 * 54.08172 * 16 15 14 18 18 C 1.46907 * 110.99965 * 172.60497 * 17 16 15 19 19 C 1.53785 * 113.61443 * 38.43966 * 18 17 16 20 20 C 1.53952 * 87.02009 * 220.04904 * 19 18 17 21 21 C 1.53785 * 87.11364 * 25.36290 * 20 19 18 22 22 C 1.46893 * 111.27197 * 296.75343 * 17 16 15 23 23 C 1.47073 * 120.88291 * 4.99131 * 14 12 11 24 24 C 1.52994 * 109.47430 * 60.00016 * 9 7 2 25 25 F 1.39900 * 109.47527 * 179.97438 * 24 9 7 26 26 F 1.39899 * 109.47427 * 300.00539 * 24 9 7 27 27 F 1.39907 * 109.46715 * 59.99941 * 24 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99450 * 334.99657 * 11 9 7 30 30 H 1.08998 * 109.62540 * 248.52006 * 15 14 12 31 31 H 1.09000 * 109.62874 * 9.10361 * 15 14 12 32 32 H 1.09000 * 109.65181 * 294.08080 * 16 15 14 33 33 H 1.09003 * 109.44534 * 173.95853 * 16 15 14 34 34 H 1.09001 * 112.85070 * 169.63695 * 18 17 16 35 35 H 1.09002 * 113.60851 * 334.57162 * 19 18 17 36 36 H 1.08998 * 113.61359 * 105.46493 * 19 18 17 37 37 H 1.08996 * 113.53425 * 270.81267 * 20 19 18 38 38 H 1.09003 * 113.74157 * 139.94644 * 20 19 18 39 39 H 1.08997 * 113.61067 * 220.09377 * 21 20 19 40 40 H 1.09000 * 113.61418 * 89.18727 * 21 20 19 41 41 H 1.08995 * 109.49798 * 303.14495 * 22 17 16 42 42 H 1.09004 * 109.51711 * 183.07677 * 22 17 16 43 43 H 1.08998 * 109.63441 * 350.90223 * 23 14 12 44 44 H 1.08997 * 109.63028 * 111.48100 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6128 -0.0005 12 6 1.8386 -4.8108 0.4979 13 8 0.7523 -4.9440 1.0275 14 7 2.6785 -5.8612 0.4091 15 6 2.2621 -7.2002 0.8528 16 6 2.5523 -8.1958 -0.2816 17 7 3.9630 -8.0833 -0.6757 18 6 4.3275 -9.1356 -1.6338 19 6 3.2230 -9.4456 -2.6580 20 6 3.5955 -10.9299 -2.4904 21 6 4.1199 -10.5601 -1.0928 22 6 4.2601 -6.7512 -1.2186 23 6 4.0377 -5.6976 -0.1283 24 6 0.3709 -2.5800 -1.2494 25 9 -0.3282 -3.7918 -1.2497 26 9 -0.5381 -1.5166 -1.2489 27 9 1.1749 -2.5057 -2.3920 28 1 -0.4850 0.8401 0.0004 29 1 3.0968 -3.4867 -0.3556 30 1 2.8234 -7.4818 1.7437 31 1 1.1949 -7.1970 1.0747 32 1 1.9165 -7.9712 -1.1380 33 1 2.3511 -9.2095 0.0649 34 1 5.3079 -8.9778 -2.0832 35 1 2.2203 -9.2044 -2.3052 36 1 3.4283 -9.0526 -3.6538 37 1 4.3753 -11.2630 -3.1752 38 1 2.7351 -11.5988 -2.4711 39 1 5.0481 -11.0658 -0.8269 40 1 3.3627 -10.6244 -0.3113 41 1 3.6006 -6.5467 -2.0620 42 1 5.2975 -6.7167 -1.5515 43 1 4.1452 -4.7005 -0.5552 44 1 4.7664 -5.8375 0.6701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932918091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:55 Heat of formation + Delta-G solvation = -118.396410 kcal Electronic energy + Delta-G solvation = -31175.288930 eV Core-core repulsion = 26521.844402 eV Total energy + Delta-G solvation = -4653.444528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.32719 -45.98315 -45.59247 -40.46039 -39.26317 -36.70813 -34.69256 -33.42384 -32.52677 -31.08592 -28.53857 -27.02183 -25.91883 -24.56779 -23.91129 -23.81410 -21.92065 -20.95982 -19.48589 -18.93271 -18.14489 -16.95012 -16.82746 -16.60415 -16.37004 -15.96069 -15.76058 -15.23998 -14.88449 -14.82765 -14.69539 -14.52599 -13.84626 -13.46112 -13.01216 -12.95804 -12.88626 -12.80268 -12.58967 -12.41291 -12.37701 -12.22829 -12.01489 -11.96198 -11.80550 -11.64898 -11.34093 -11.16564 -11.11376 -10.88030 -10.86086 -10.76198 -10.75097 -10.46866 -10.36442 -9.65000 -9.47247 -8.71848 -8.63319 -8.32845 -8.03047 -6.22162 -4.46115 3.02231 3.20495 3.25433 3.27441 3.64064 3.80477 4.18151 4.35592 4.38669 4.42010 4.59238 4.62623 4.65305 4.87174 4.94611 5.00334 5.05930 5.21586 5.33130 5.36688 5.40925 5.49386 5.57270 5.61747 5.66919 5.71254 5.82011 5.84486 5.86519 5.90495 5.91347 6.06077 6.14686 6.23748 6.67312 6.83574 6.92465 6.95976 7.23005 7.38851 7.62230 7.67018 8.50016 8.61535 9.15092 9.25934 10.69450 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.003205 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.796881 B = 8734.443374 C = 8982.129996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.261 3.739 10 H 0.086 0.914 11 N -0.727 5.727 12 C 0.704 3.296 13 O -0.584 6.584 14 N -0.637 5.637 15 C 0.138 3.862 16 C 0.037 3.963 17 N -0.526 5.526 18 C 0.065 3.935 19 C -0.182 4.182 20 C -0.140 4.140 21 C -0.132 4.132 22 C 0.042 3.958 23 C 0.117 3.883 24 C 0.416 3.584 25 F -0.219 7.219 26 F -0.137 7.137 27 F -0.211 7.211 28 H 0.269 0.731 29 H 0.393 0.607 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 -16.311 -3.303 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.155 3.845 10 H 0.104 0.896 11 N -0.381 5.381 12 C 0.406 3.594 13 O -0.461 6.461 14 N -0.376 5.376 15 C 0.014 3.986 16 C -0.092 4.092 17 N -0.249 5.249 18 C -0.044 4.044 19 C -0.221 4.221 20 C -0.178 4.178 21 C -0.170 4.170 22 C -0.087 4.087 23 C -0.007 4.007 24 C 0.359 3.641 25 F -0.201 7.201 26 F -0.118 7.118 27 F -0.193 7.193 28 H 0.079 0.921 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.725 -16.282 -2.506 18.642 hybrid contribution 0.256 0.975 -1.373 1.704 sum 8.980 -15.307 -3.880 18.166 Atomic orbital electron populations 1.70396 1.05848 1.27450 1.43587 1.25077 0.95153 1.00066 0.94075 0.86271 0.79332 0.81336 0.78886 1.19848 1.20880 1.19780 1.20832 0.93708 0.88145 1.56222 0.90609 1.19599 0.88346 0.85007 0.91548 0.89615 1.45416 1.17395 1.09900 1.65399 1.15960 0.83607 0.80548 0.79313 1.90892 1.22231 1.83462 1.49508 1.47290 1.13902 1.08154 1.68276 1.21552 1.01781 0.79765 0.95529 1.22729 0.88312 0.99998 0.98142 1.61923 1.20229 1.02603 1.40111 1.23243 0.98315 0.91254 0.91575 1.23716 1.00903 0.97090 1.00435 1.22732 1.01111 0.96405 0.97557 1.23080 1.01645 0.95335 0.96946 1.22451 1.01324 0.88626 0.96253 1.21666 0.84228 0.98470 0.96324 1.23215 0.80920 0.72723 0.87201 1.93061 1.81532 1.48494 1.96980 1.93402 1.68424 1.53775 1.96200 1.92981 1.74476 1.96188 1.55609 0.92069 0.77128 0.91429 0.88617 0.93731 0.89618 0.87995 0.89348 0.91658 0.90287 0.91386 0.91230 0.89611 0.94064 0.89763 0.89845 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.14 9.50 55.43 0.53 -22.62 16 2 C 0.07 1.70 5.20 -17.82 -0.09 1.61 16 3 Si 0.92 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -14.15 8.46 -34.44 -0.29 -14.45 16 8 H 0.08 1.82 7.74 -52.49 -0.41 1.42 16 9 C 0.26 6.60 2.22 -69.08 -0.15 6.44 16 10 H 0.09 2.44 7.50 -51.93 -0.39 2.05 16 11 N -0.73 -15.31 4.90 -59.81 -0.29 -15.60 16 12 C 0.70 14.60 7.76 -86.92 -0.67 13.93 16 13 O -0.58 -14.33 14.65 5.29 0.08 -14.26 16 14 N -0.64 -10.10 3.00 -177.91 -0.53 -10.63 16 15 C 0.14 1.88 6.61 -3.36 -0.02 1.86 16 16 C 0.04 0.41 4.48 -3.46 -0.02 0.40 16 17 N -0.53 -5.47 4.75 -225.06 -1.07 -6.54 16 18 C 0.07 0.57 3.85 -66.89 -0.26 0.31 16 19 C -0.18 -1.60 7.37 -25.83 -0.19 -1.79 16 20 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16 21 C -0.13 -1.01 7.58 -25.91 -0.20 -1.21 16 22 C 0.04 0.45 5.61 -3.70 -0.02 0.43 16 23 C 0.12 1.45 6.59 -3.60 -0.02 1.42 16 24 C 0.42 10.82 2.81 37.15 0.10 10.92 16 25 F -0.22 -5.68 15.90 2.25 0.04 -5.64 16 26 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 27 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 7.18 6.04 -40.82 -0.25 6.94 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.47 7.09 -51.93 -0.37 1.10 16 32 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 33 H 0.09 0.82 6.05 -51.93 -0.31 0.50 16 34 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 35 H 0.09 0.88 5.65 -51.93 -0.29 0.59 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.68 6.20 -51.93 -0.32 0.36 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 43 H 0.08 1.01 5.64 -51.93 -0.29 0.72 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -30.61 349.79 -8.88 -39.49 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.90 Total: 5.80 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: -2.04 Total: 18.65 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -1.37 Total: -55.39 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.08 Total: -14.26 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.61 -8.88 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.905 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds