Wall clock time and date at job start Tue Mar 31 2020 18:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00086 * 2 1 4 4 H 1.48504 * 109.47196 * 240.00161 * 3 2 1 5 5 H 1.48499 * 109.47199 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47334 * 120.00415 * 3 2 1 7 7 C 1.37883 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99916 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00014 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47230 * 299.99970 * 9 7 2 11 11 N 1.46507 * 109.47087 * 180.02562 * 9 7 2 12 12 C 1.34774 * 119.99814 * 154.72279 * 11 9 7 13 13 O 1.21584 * 120.00140 * 355.12758 * 12 11 9 14 14 N 1.34777 * 119.99513 * 175.13121 * 12 11 9 15 15 C 1.47082 * 120.87935 * 184.71787 * 14 12 11 16 16 C 1.53693 * 108.27774 * 128.74970 * 15 14 12 17 17 N 1.46902 * 109.25351 * 54.08172 * 16 15 14 18 18 C 1.46907 * 110.99965 * 172.60497 * 17 16 15 19 19 C 1.53785 * 113.61443 * 38.43966 * 18 17 16 20 20 C 1.53952 * 87.02009 * 220.04904 * 19 18 17 21 21 C 1.53785 * 87.11364 * 25.36290 * 20 19 18 22 22 C 1.46893 * 111.27197 * 296.75343 * 17 16 15 23 23 C 1.47073 * 120.88291 * 4.99131 * 14 12 11 24 24 C 1.52994 * 109.47430 * 60.00016 * 9 7 2 25 25 F 1.39900 * 109.47527 * 179.97438 * 24 9 7 26 26 F 1.39899 * 109.47427 * 300.00539 * 24 9 7 27 27 F 1.39907 * 109.46715 * 59.99941 * 24 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 1 2 3 29 29 H 0.96995 * 119.99450 * 334.99657 * 11 9 7 30 30 H 1.08998 * 109.62540 * 248.52006 * 15 14 12 31 31 H 1.09000 * 109.62874 * 9.10361 * 15 14 12 32 32 H 1.09000 * 109.65181 * 294.08080 * 16 15 14 33 33 H 1.09003 * 109.44534 * 173.95853 * 16 15 14 34 34 H 1.09001 * 112.85070 * 169.63695 * 18 17 16 35 35 H 1.09002 * 113.60851 * 334.57162 * 19 18 17 36 36 H 1.08998 * 113.61359 * 105.46493 * 19 18 17 37 37 H 1.08996 * 113.53425 * 270.81267 * 20 19 18 38 38 H 1.09003 * 113.74157 * 139.94644 * 20 19 18 39 39 H 1.08997 * 113.61067 * 220.09377 * 21 20 19 40 40 H 1.09000 * 113.61418 * 89.18727 * 21 20 19 41 41 H 1.08995 * 109.49798 * 303.14495 * 22 17 16 42 42 H 1.09004 * 109.51711 * 183.07677 * 22 17 16 43 43 H 1.08998 * 109.63441 * 350.90223 * 23 14 12 44 44 H 1.08997 * 109.63028 * 111.48100 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 2.2030 -3.6128 -0.0005 12 6 1.8386 -4.8108 0.4979 13 8 0.7523 -4.9440 1.0275 14 7 2.6785 -5.8612 0.4091 15 6 2.2621 -7.2002 0.8528 16 6 2.5523 -8.1958 -0.2816 17 7 3.9630 -8.0833 -0.6757 18 6 4.3275 -9.1356 -1.6338 19 6 3.2230 -9.4456 -2.6580 20 6 3.5955 -10.9299 -2.4904 21 6 4.1199 -10.5601 -1.0928 22 6 4.2601 -6.7512 -1.2186 23 6 4.0377 -5.6976 -0.1283 24 6 0.3709 -2.5800 -1.2494 25 9 -0.3282 -3.7918 -1.2497 26 9 -0.5381 -1.5166 -1.2489 27 9 1.1749 -2.5057 -2.3920 28 1 -0.4850 0.8401 0.0004 29 1 3.0968 -3.4867 -0.3556 30 1 2.8234 -7.4818 1.7437 31 1 1.1949 -7.1970 1.0747 32 1 1.9165 -7.9712 -1.1380 33 1 2.3511 -9.2095 0.0649 34 1 5.3079 -8.9778 -2.0832 35 1 2.2203 -9.2044 -2.3052 36 1 3.4283 -9.0526 -3.6538 37 1 4.3753 -11.2630 -3.1752 38 1 2.7351 -11.5988 -2.4711 39 1 5.0481 -11.0658 -0.8269 40 1 3.3627 -10.6244 -0.3113 41 1 3.6006 -6.5467 -2.0620 42 1 5.2975 -6.7167 -1.5515 43 1 4.1452 -4.7005 -0.5552 44 1 4.7664 -5.8375 0.6701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932918091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:55 Heat of formation + Delta-G solvation = -138.353099 kcal Electronic energy + Delta-G solvation = -31176.154317 eV Core-core repulsion = 26521.844402 eV Total energy + Delta-G solvation = -4654.309915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.43572 -48.07353 -47.74218 -41.57939 -40.45254 -37.84605 -36.53518 -34.75920 -34.17903 -32.19002 -30.26352 -28.18984 -26.59845 -26.56476 -24.92728 -24.73511 -23.50818 -22.36195 -20.90481 -20.07071 -19.32101 -18.90943 -18.78410 -18.62418 -17.76581 -17.27226 -16.95192 -16.62665 -16.36297 -16.27702 -15.64769 -15.58188 -15.24176 -15.05333 -14.97136 -14.61489 -14.48568 -14.31617 -14.21784 -14.04305 -13.90828 -13.74882 -13.56668 -13.38154 -13.04661 -12.82940 -12.72230 -12.63274 -12.57769 -12.27818 -12.17121 -12.05390 -11.67105 -11.59217 -11.38196 -11.27917 -11.03153 -10.67623 -10.20712 -9.63574 -9.16185 -8.20759 -6.52202 1.46587 1.49886 1.56524 1.62829 2.08556 2.36831 2.53128 2.84987 2.92991 2.96156 3.70018 3.73219 3.76840 3.82767 3.88013 3.96930 3.98535 4.06789 4.16540 4.18636 4.22805 4.41797 4.48486 4.68482 4.73583 4.77474 4.81510 4.87949 4.89776 4.91716 5.03936 5.08271 5.15167 5.21244 5.41945 5.44843 5.48426 5.60819 5.65214 5.93519 6.06194 6.15589 6.52612 7.02172 7.18265 7.59319 8.71974 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.003205 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.796881 B = 8734.443374 C = 8982.129996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.015 3.985 3 Si 0.985 3.015 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.270 3.730 10 H 0.045 0.955 11 N -0.720 5.720 12 C 0.698 3.302 13 O -0.630 6.630 14 N -0.629 5.629 15 C 0.134 3.866 16 C 0.048 3.952 17 N -0.524 5.524 18 C 0.063 3.937 19 C -0.188 4.188 20 C -0.132 4.132 21 C -0.128 4.128 22 C 0.047 3.953 23 C 0.112 3.888 24 C 0.413 3.587 25 F -0.221 7.221 26 F -0.150 7.150 27 F -0.203 7.203 28 H 0.269 0.731 29 H 0.407 0.593 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.023 0.977 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -17.117 -3.786 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.190 4.190 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.599 4.599 8 H 0.110 0.890 9 C 0.162 3.838 10 H 0.063 0.937 11 N -0.376 5.376 12 C 0.399 3.601 13 O -0.511 6.511 14 N -0.367 5.367 15 C 0.011 3.989 16 C -0.081 4.081 17 N -0.247 5.247 18 C -0.045 4.045 19 C -0.227 4.227 20 C -0.170 4.170 21 C -0.166 4.166 22 C -0.082 4.082 23 C -0.011 4.011 24 C 0.357 3.643 25 F -0.203 7.203 26 F -0.131 7.131 27 F -0.185 7.185 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.755 -17.146 -3.009 21.005 hybrid contribution -0.662 1.124 -1.234 1.796 sum 11.094 -16.021 -4.243 19.944 Atomic orbital electron populations 1.70534 1.07546 1.28261 1.44565 1.26020 0.95905 1.03721 0.93393 0.85189 0.77986 0.76599 0.79425 1.18883 1.21023 1.18662 1.21183 0.94520 0.88246 1.55945 0.88988 1.19173 0.88465 0.86622 0.89518 0.93685 1.45150 1.17385 1.09324 1.65765 1.16163 0.83664 0.81224 0.79007 1.90855 1.24498 1.84258 1.51449 1.47373 1.14610 1.07516 1.67207 1.21714 1.00766 0.79180 0.97279 1.22593 0.88861 1.00110 0.96502 1.61962 1.19090 1.02896 1.40766 1.23399 0.98718 0.91159 0.91265 1.23705 1.00157 0.98581 1.00265 1.22725 1.01497 0.95211 0.97594 1.23055 1.02090 0.94469 0.96944 1.22441 1.02599 0.88312 0.94822 1.21959 0.82310 0.99354 0.97465 1.23371 0.80878 0.72271 0.87823 1.93051 1.81677 1.48588 1.97030 1.93376 1.68972 1.54440 1.96312 1.92980 1.74161 1.96145 1.55211 0.92130 0.75429 0.89682 0.90939 0.95590 0.87586 0.86589 0.90942 0.92005 0.89038 0.91199 0.90063 0.89982 0.95881 0.86840 0.89701 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.05 9.50 21.45 0.20 -48.85 16 2 C 0.01 0.78 5.20 84.66 0.44 1.22 16 3 Si 0.98 40.54 29.54 68.60 2.03 42.57 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 7 C -0.56 -28.73 8.46 25.60 0.22 -28.52 16 8 H 0.09 4.29 7.74 -2.91 -0.02 4.27 16 9 C 0.27 13.96 2.22 44.24 0.10 14.06 16 10 H 0.05 2.71 7.50 -2.39 -0.02 2.69 16 11 N -0.72 -30.59 4.90 -461.41 -2.26 -32.85 16 12 C 0.70 29.50 7.76 179.05 1.39 30.89 16 13 O -0.63 -32.24 14.65 -3.98 -0.06 -32.30 16 14 N -0.63 -19.70 3.00 -835.06 -2.51 -22.21 16 15 C 0.13 3.60 6.61 86.50 0.57 4.17 16 16 C 0.05 1.03 4.48 86.54 0.39 1.42 16 17 N -0.52 -9.69 4.75 -865.97 -4.11 -13.80 16 18 C 0.06 0.93 3.85 45.44 0.17 1.10 16 19 C -0.19 -3.02 7.37 31.18 0.23 -2.79 16 20 C -0.13 -1.61 8.09 31.18 0.25 -1.36 16 21 C -0.13 -1.59 7.58 31.12 0.24 -1.36 16 22 C 0.05 0.90 5.61 86.39 0.48 1.39 16 23 C 0.11 2.54 6.59 86.35 0.57 3.11 16 24 C 0.41 21.97 2.81 71.98 0.20 22.17 16 25 F -0.22 -11.85 15.90 44.97 0.72 -11.14 16 26 F -0.15 -8.61 12.91 44.97 0.58 -8.03 16 27 F -0.20 -10.13 16.94 44.97 0.76 -9.36 16 28 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.41 14.59 6.04 -92.71 -0.56 14.03 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.31 7.09 -2.39 -0.02 2.29 16 32 H 0.03 0.67 6.46 -2.39 -0.02 0.65 16 33 H 0.11 1.85 6.05 -2.39 -0.01 1.84 16 34 H 0.12 1.44 8.04 -2.39 -0.02 1.42 16 35 H 0.07 1.41 5.65 -2.39 -0.01 1.40 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.09 6.20 -2.39 -0.01 1.08 16 41 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 1.57 8.04 -2.38 -0.02 1.55 16 43 H 0.08 1.90 5.64 -2.39 -0.01 1.88 16 44 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -67.37 349.79 1.09 -66.28 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.49 Total: 24.19 kcal Atomic # 6 Polarization: 40.25 SS G_CDS: 5.25 Total: 45.50 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -8.68 Total: -117.71 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.06 Total: -32.30 kcal Atomic # 9 Polarization: -30.58 SS G_CDS: 2.06 Total: -28.53 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -67.37 1.09 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932918091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.075 kcal (2) G-P(sol) polarization free energy of solvation -67.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds