Wall clock time and date at job start Tue Mar 31 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48500 * 109.47167 * 240.00264 * 3 2 1 5 5 H 1.48504 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47102 * 119.99807 * 3 2 1 7 7 C 1.37875 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46983 * 299.99606 * 9 7 2 11 11 N 1.46507 * 109.47122 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99876 * 155.00086 * 11 9 7 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 H 1.08999 * 110.80596 * 328.90984 * 15 14 12 17 17 C 1.55325 * 110.91160 * 92.58299 * 15 14 12 18 18 C 1.54795 * 104.99607 * 140.39107 * 17 15 14 19 19 N 1.46336 * 105.96027 * 3.64775 * 18 17 15 20 20 C 1.45534 * 117.21826 * 208.06269 * 19 18 17 21 21 C 1.53630 * 107.86478 * 185.54326 * 20 19 18 22 22 C 1.52831 * 110.64670 * 302.87223 * 21 20 19 23 23 C 1.53781 * 111.13488 * 53.50832 * 22 21 20 24 24 C 1.48656 * 105.49810 * 330.48964 * 19 18 17 25 25 H 1.08998 * 111.11292 * 285.42632 * 24 19 18 26 26 C 1.52997 * 109.47247 * 59.99565 * 9 7 2 27 27 F 1.39903 * 109.47126 * 179.97438 * 26 9 7 28 28 F 1.39894 * 109.47202 * 300.00327 * 26 9 7 29 29 F 1.39903 * 109.47248 * 60.00297 * 26 9 7 30 30 H 0.97002 * 119.99094 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99601 * 334.99426 * 11 9 7 32 32 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 33 33 H 1.09007 * 110.33526 * 259.27221 * 17 15 14 34 34 H 1.09002 * 110.33626 * 21.50422 * 17 15 14 35 35 H 1.08998 * 110.15282 * 244.52041 * 18 17 15 36 36 H 1.09004 * 110.21464 * 122.80149 * 18 17 15 37 37 H 1.08993 * 109.78481 * 305.13767 * 20 19 18 38 38 H 1.09007 * 109.77976 * 65.95434 * 20 19 18 39 39 H 1.09002 * 109.24262 * 63.16636 * 21 20 19 40 40 H 1.08997 * 109.24768 * 182.60540 * 21 20 19 41 41 H 1.08995 * 109.24718 * 174.15895 * 22 21 20 42 42 H 1.08998 * 109.24561 * 293.57637 * 22 21 20 43 43 H 1.09001 * 110.35333 * 184.80227 * 23 22 21 44 44 H 1.08998 * 109.39397 * 63.79896 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 2.2029 -3.6128 0.0005 12 6 1.8367 -4.8124 0.4938 13 8 0.7164 -4.9702 0.9392 14 7 2.7123 -5.8369 0.4933 15 6 2.3163 -7.1392 1.0350 16 1 1.5918 -7.0193 1.8406 17 6 1.7546 -8.0577 -0.0845 18 6 2.3125 -9.4658 0.2352 19 7 3.0467 -9.3315 1.4940 20 6 4.1524 -10.2501 1.7210 21 6 4.6743 -10.0162 3.1469 22 6 5.0920 -8.5583 3.3354 23 6 3.9539 -7.6005 2.9455 24 6 3.5456 -7.9313 1.5153 25 1 4.3845 -7.8030 0.8313 26 6 0.3717 -2.5804 -1.2489 27 9 -0.3274 -3.7923 -1.2492 28 9 -0.5373 -1.5171 -1.2495 29 9 1.1764 -2.5067 -2.3910 30 1 -0.4849 0.8401 0.0004 31 1 3.0967 -3.4867 -0.3546 32 1 3.6062 -5.7109 0.1383 33 1 0.6650 -8.0666 -0.0561 34 1 2.1062 -7.7235 -1.0607 35 1 2.9844 -9.7926 -0.5584 36 1 1.4951 -10.1774 0.3514 37 1 3.8047 -11.2781 1.6194 38 1 4.9472 -10.0558 1.0007 39 1 3.8882 -10.2599 3.8616 40 1 5.5343 -10.6617 3.3251 41 1 5.3595 -8.3932 4.3791 42 1 5.9567 -8.3480 2.7059 43 1 4.2923 -6.5660 3.0035 44 1 3.1078 -7.7518 3.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932925194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:11 Heat of formation + Delta-G solvation = -164.570523 kcal Electronic energy + Delta-G solvation = -30767.719467 eV Core-core repulsion = 26112.272679 eV Total energy + Delta-G solvation = -4655.446788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.29459 -45.94541 -45.56668 -40.40089 -38.95791 -35.57794 -34.54615 -33.75084 -32.55678 -31.28720 -29.34150 -28.31187 -26.39269 -24.52157 -23.30833 -22.01925 -21.74536 -20.67404 -20.40179 -19.70541 -18.29342 -16.93928 -16.79011 -16.54707 -16.40800 -15.79833 -15.60326 -15.10980 -14.88398 -14.66042 -14.36600 -14.13174 -13.77109 -13.52644 -13.35206 -13.23338 -12.89859 -12.85097 -12.56027 -12.43258 -12.34553 -12.23947 -11.94886 -11.91998 -11.76817 -11.50340 -11.36448 -11.15716 -10.99993 -10.85940 -10.83194 -10.71733 -10.54900 -10.47871 -10.37526 -9.65468 -9.51388 -8.76934 -8.69122 -8.51542 -8.14391 -6.21666 -4.45587 3.09209 3.20677 3.25761 3.27892 3.78751 3.82677 4.20527 4.34028 4.50352 4.60891 4.68704 4.81854 4.93306 4.95316 4.95625 5.00902 5.09967 5.10642 5.25736 5.35408 5.46584 5.50655 5.66799 5.72180 5.80074 5.83580 5.87925 5.91038 5.92614 5.97777 6.13075 6.16802 6.23587 6.26789 6.66603 6.87168 6.91360 7.06382 7.23713 7.39700 7.64324 7.71211 8.50985 8.68548 9.17150 9.28234 10.69911 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.003088 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.654303 B = 9066.043044 C = 9981.573176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.700 3.300 13 O -0.581 6.581 14 N -0.745 5.745 15 C 0.173 3.827 16 H 0.106 0.894 17 C -0.143 4.143 18 C 0.053 3.947 19 N -0.534 5.534 20 C 0.062 3.938 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.105 4.105 24 C 0.063 3.937 25 H 0.056 0.944 26 C 0.415 3.585 27 F -0.216 7.216 28 F -0.138 7.138 29 F -0.211 7.211 30 H 0.269 0.731 31 H 0.393 0.607 32 H 0.391 0.609 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.999 -16.382 2.397 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.103 0.897 11 N -0.379 5.379 12 C 0.400 3.600 13 O -0.458 6.458 14 N -0.401 5.401 15 C 0.066 3.934 16 H 0.124 0.876 17 C -0.182 4.182 18 C -0.075 4.075 19 N -0.259 5.259 20 C -0.066 4.066 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.143 4.143 24 C -0.046 4.046 25 H 0.074 0.926 26 C 0.359 3.641 27 F -0.198 7.198 28 F -0.119 7.119 29 F -0.193 7.193 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.224 0.776 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.381 -16.511 3.183 18.788 hybrid contribution 1.661 0.950 -1.483 2.421 sum 10.042 -15.561 1.701 18.598 Atomic orbital electron populations 1.70401 1.05835 1.27436 1.43583 1.25076 0.95153 1.00060 0.94107 0.86275 0.79329 0.81378 0.78859 1.19873 1.20886 1.19806 1.20840 0.93727 0.88155 1.56227 0.90586 1.19583 0.88248 0.84919 0.91560 0.89712 1.45269 1.17337 1.09740 1.65572 1.16050 0.84408 0.80398 0.79135 1.90919 1.19539 1.82896 1.52474 1.45048 1.16145 1.10479 1.68448 1.21398 0.95633 0.80669 0.95729 0.87588 1.23118 1.02250 0.93533 0.99330 1.22504 0.97530 0.97945 0.89485 1.62612 1.25876 1.02688 1.34771 1.21943 0.91487 0.96480 0.96694 1.21587 1.00586 0.96518 0.96507 1.21591 0.98055 0.94722 1.01381 1.21540 0.98840 0.98867 0.95079 1.22738 0.95712 0.88819 0.97335 0.92644 1.23190 0.80919 0.72797 0.87191 1.93073 1.81473 1.48318 1.96966 1.93398 1.68444 1.53842 1.96207 1.92981 1.74452 1.96201 1.55659 0.92077 0.77330 0.77583 0.90178 0.91007 0.94428 0.90274 0.90786 0.95048 0.91100 0.91787 0.91765 0.92634 0.91027 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.07 9.50 55.43 0.53 -22.54 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.55 -14.05 8.46 -34.44 -0.29 -14.34 16 8 H 0.08 1.81 7.74 -52.48 -0.41 1.41 16 9 C 0.26 6.56 2.21 -69.08 -0.15 6.41 16 10 H 0.09 2.38 7.58 -51.93 -0.39 1.99 16 11 N -0.73 -14.78 4.99 -59.81 -0.30 -15.07 16 12 C 0.70 13.86 8.10 -86.92 -0.70 13.15 16 13 O -0.58 -13.95 14.56 5.29 0.08 -13.87 16 14 N -0.75 -10.79 5.14 -57.00 -0.29 -11.08 16 15 C 0.17 2.31 2.96 -66.21 -0.20 2.11 16 16 H 0.11 1.70 7.50 -51.93 -0.39 1.31 16 17 C -0.14 -1.77 6.73 -24.55 -0.17 -1.94 16 18 C 0.05 0.54 6.86 -3.19 -0.02 0.52 16 19 N -0.53 -5.52 4.66 -225.06 -1.05 -6.57 16 20 C 0.06 0.53 5.85 -4.23 -0.02 0.50 16 21 C -0.11 -0.89 6.08 -26.49 -0.16 -1.05 16 22 C -0.12 -0.99 5.92 -26.41 -0.16 -1.14 16 23 C -0.11 -1.06 5.73 -26.65 -0.15 -1.22 16 24 C 0.06 0.67 2.20 -66.58 -0.15 0.52 16 25 H 0.06 0.56 7.98 -51.93 -0.41 0.15 16 26 C 0.42 10.76 2.81 37.16 0.10 10.87 16 27 F -0.22 -5.60 15.67 2.25 0.04 -5.57 16 28 F -0.14 -3.85 12.91 2.25 0.03 -3.82 16 29 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 6.83 8.55 -40.82 -0.35 6.48 16 32 H 0.39 4.52 8.62 -40.82 -0.35 4.17 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.04 0.35 8.04 -51.93 -0.42 -0.07 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.03 0.26 8.05 -51.92 -0.42 -0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -30.31 358.07 -9.22 -39.53 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.50 Total: 7.80 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: -2.16 Total: 15.99 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -1.11 Total: -55.27 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 0.10 Total: -14.60 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.31 -9.22 -39.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.038 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds