Wall clock time and date at job start Tue Mar 31 2020 18:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00467 * 2 1 4 4 H 1.48500 * 109.47167 * 240.00264 * 3 2 1 5 5 H 1.48504 * 109.46768 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47102 * 119.99807 * 3 2 1 7 7 C 1.37875 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00234 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00190 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.46983 * 299.99606 * 9 7 2 11 11 N 1.46507 * 109.47122 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99876 * 155.00086 * 11 9 7 13 13 O 1.21583 * 120.00144 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99585 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99665 * 179.72218 * 14 12 11 16 16 H 1.08999 * 110.80596 * 328.90984 * 15 14 12 17 17 C 1.55325 * 110.91160 * 92.58299 * 15 14 12 18 18 C 1.54795 * 104.99607 * 140.39107 * 17 15 14 19 19 N 1.46336 * 105.96027 * 3.64775 * 18 17 15 20 20 C 1.45534 * 117.21826 * 208.06269 * 19 18 17 21 21 C 1.53630 * 107.86478 * 185.54326 * 20 19 18 22 22 C 1.52831 * 110.64670 * 302.87223 * 21 20 19 23 23 C 1.53781 * 111.13488 * 53.50832 * 22 21 20 24 24 C 1.48656 * 105.49810 * 330.48964 * 19 18 17 25 25 H 1.08998 * 111.11292 * 285.42632 * 24 19 18 26 26 C 1.52997 * 109.47247 * 59.99565 * 9 7 2 27 27 F 1.39903 * 109.47126 * 179.97438 * 26 9 7 28 28 F 1.39894 * 109.47202 * 300.00327 * 26 9 7 29 29 F 1.39903 * 109.47248 * 60.00297 * 26 9 7 30 30 H 0.97002 * 119.99094 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99601 * 334.99426 * 11 9 7 32 32 H 0.97001 * 120.00485 * 0.02562 * 14 12 11 33 33 H 1.09007 * 110.33526 * 259.27221 * 17 15 14 34 34 H 1.09002 * 110.33626 * 21.50422 * 17 15 14 35 35 H 1.08998 * 110.15282 * 244.52041 * 18 17 15 36 36 H 1.09004 * 110.21464 * 122.80149 * 18 17 15 37 37 H 1.08993 * 109.78481 * 305.13767 * 20 19 18 38 38 H 1.09007 * 109.77976 * 65.95434 * 20 19 18 39 39 H 1.09002 * 109.24262 * 63.16636 * 21 20 19 40 40 H 1.08997 * 109.24768 * 182.60540 * 21 20 19 41 41 H 1.08995 * 109.24718 * 174.15895 * 22 21 20 42 42 H 1.08998 * 109.24561 * 293.57637 * 22 21 20 43 43 H 1.09001 * 110.35333 * 184.80227 * 23 22 21 44 44 H 1.08998 * 109.39397 * 63.79896 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 2.2029 -3.6128 0.0005 12 6 1.8367 -4.8124 0.4938 13 8 0.7164 -4.9702 0.9392 14 7 2.7123 -5.8369 0.4933 15 6 2.3163 -7.1392 1.0350 16 1 1.5918 -7.0193 1.8406 17 6 1.7546 -8.0577 -0.0845 18 6 2.3125 -9.4658 0.2352 19 7 3.0467 -9.3315 1.4940 20 6 4.1524 -10.2501 1.7210 21 6 4.6743 -10.0162 3.1469 22 6 5.0920 -8.5583 3.3354 23 6 3.9539 -7.6005 2.9455 24 6 3.5456 -7.9313 1.5153 25 1 4.3845 -7.8030 0.8313 26 6 0.3717 -2.5804 -1.2489 27 9 -0.3274 -3.7923 -1.2492 28 9 -0.5373 -1.5171 -1.2495 29 9 1.1764 -2.5067 -2.3910 30 1 -0.4849 0.8401 0.0004 31 1 3.0967 -3.4867 -0.3546 32 1 3.6062 -5.7109 0.1383 33 1 0.6650 -8.0666 -0.0561 34 1 2.1062 -7.7235 -1.0607 35 1 2.9844 -9.7926 -0.5584 36 1 1.4951 -10.1774 0.3514 37 1 3.8047 -11.2781 1.6194 38 1 4.9472 -10.0558 1.0007 39 1 3.8882 -10.2599 3.8616 40 1 5.5343 -10.6617 3.3251 41 1 5.3595 -8.3932 4.3791 42 1 5.9567 -8.3480 2.7059 43 1 4.2923 -6.5660 3.0035 44 1 3.1078 -7.7518 3.6159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932925194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:10 Heat of formation + Delta-G solvation = -185.455575 kcal Electronic energy + Delta-G solvation = -30768.625111 eV Core-core repulsion = 26112.272679 eV Total energy + Delta-G solvation = -4656.352432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.39037 -48.02257 -47.70552 -41.48168 -40.34750 -36.81040 -36.11886 -34.92100 -34.37071 -32.33343 -30.28852 -29.94627 -27.45138 -26.54391 -24.07610 -23.72629 -22.57551 -22.13880 -21.63028 -20.74407 -19.86825 -18.85839 -18.76408 -18.53298 -17.93201 -17.24174 -16.74793 -16.66271 -15.94434 -15.87444 -15.71879 -15.38575 -15.04977 -14.94202 -14.63757 -14.56706 -14.43954 -14.36655 -14.28020 -14.26395 -14.00182 -13.85280 -13.68204 -13.35844 -13.06853 -12.95738 -12.70663 -12.59621 -12.37534 -12.20766 -12.15357 -11.82564 -11.58152 -11.50922 -11.42205 -11.24382 -11.20741 -10.66159 -10.27147 -9.76902 -9.28190 -8.19311 -6.50345 1.47592 1.50571 1.58181 1.69312 2.14874 2.38330 2.58078 2.93866 2.96733 3.36858 3.46793 3.67675 3.81458 3.90489 3.99846 4.02964 4.12417 4.17207 4.21621 4.24019 4.34884 4.51170 4.55023 4.66888 4.82094 4.84963 4.90200 4.93163 5.00026 5.05236 5.11535 5.14798 5.26577 5.33637 5.45080 5.50989 5.52075 5.56508 5.67095 5.97459 6.13192 6.32372 6.54746 7.17421 7.22537 7.67545 8.73329 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.003088 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.654303 B = 9066.043044 C = 9981.573176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.561 4.561 8 H 0.093 0.907 9 C 0.272 3.728 10 H 0.045 0.955 11 N -0.719 5.719 12 C 0.698 3.302 13 O -0.627 6.627 14 N -0.721 5.721 15 C 0.167 3.833 16 H 0.074 0.926 17 C -0.141 4.141 18 C 0.061 3.939 19 N -0.546 5.546 20 C 0.061 3.939 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.106 4.106 24 C 0.074 3.926 25 H 0.071 0.929 26 C 0.412 3.588 27 F -0.219 7.219 28 F -0.151 7.151 29 F -0.204 7.204 30 H 0.268 0.732 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.979 -17.225 2.065 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.111 0.889 9 C 0.164 3.836 10 H 0.063 0.937 11 N -0.373 5.373 12 C 0.398 3.602 13 O -0.508 6.508 14 N -0.378 5.378 15 C 0.060 3.940 16 H 0.092 0.908 17 C -0.181 4.181 18 C -0.066 4.066 19 N -0.272 5.272 20 C -0.067 4.067 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.035 4.035 25 H 0.089 0.911 26 C 0.356 3.644 27 F -0.201 7.201 28 F -0.133 7.133 29 F -0.186 7.186 30 H 0.078 0.922 31 H 0.246 0.754 32 H 0.246 0.754 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.438 -17.407 2.841 21.022 hybrid contribution 0.697 1.132 -1.368 1.907 sum 12.136 -16.275 1.474 20.355 Atomic orbital electron populations 1.70540 1.07525 1.28199 1.44654 1.26011 0.95892 1.03707 0.93490 0.85202 0.77974 0.76713 0.79375 1.18997 1.21111 1.18651 1.21199 0.94572 0.88252 1.55796 0.88886 1.19156 0.88403 0.86574 0.89510 0.93684 1.44978 1.17369 1.09071 1.65912 1.16207 0.84393 0.80938 0.78656 1.90891 1.21873 1.83647 1.54345 1.44804 1.16069 1.09601 1.67278 1.21472 0.96820 0.80314 0.95359 0.90770 1.23060 1.01074 0.95034 0.98932 1.22433 0.97973 0.96204 0.90032 1.62620 1.26974 1.02708 1.34897 1.22047 0.90985 0.96449 0.97210 1.21592 1.01071 0.96452 0.95877 1.21572 0.97313 0.94478 1.01989 1.21536 0.99106 0.99351 0.94453 1.22623 0.94471 0.88578 0.97788 0.91112 1.23373 0.80887 0.72326 0.87844 1.93064 1.81629 1.48407 1.97016 1.93371 1.69023 1.54545 1.96321 1.92980 1.74130 1.96158 1.55286 0.92187 0.75377 0.75372 0.92245 0.90820 0.92744 0.89796 0.89763 0.94196 0.92000 0.89770 0.91124 0.91641 0.91425 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.85 9.50 21.45 0.20 -48.65 16 2 C 0.01 0.74 5.20 84.65 0.44 1.18 16 3 Si 0.98 40.38 29.54 68.60 2.03 42.40 16 4 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.29 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.56 -28.31 8.46 25.60 0.22 -28.09 16 8 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 9 C 0.27 13.77 2.21 44.24 0.10 13.87 16 10 H 0.05 2.66 7.58 -2.39 -0.02 2.64 16 11 N -0.72 -29.19 4.99 -461.41 -2.30 -31.49 16 12 C 0.70 27.98 8.10 179.05 1.45 29.43 16 13 O -0.63 -31.31 14.56 -3.98 -0.06 -31.37 16 14 N -0.72 -20.49 5.14 -452.51 -2.33 -22.82 16 15 C 0.17 4.45 2.96 46.11 0.14 4.59 16 16 H 0.07 2.50 7.50 -2.39 -0.02 2.48 16 17 C -0.14 -3.47 6.73 32.01 0.22 -3.26 16 18 C 0.06 1.15 6.86 87.02 0.60 1.74 16 19 N -0.55 -10.30 4.66 -865.97 -4.04 -14.34 16 20 C 0.06 0.85 5.85 86.77 0.51 1.36 16 21 C -0.11 -1.44 6.08 30.75 0.19 -1.26 16 22 C -0.12 -1.63 5.92 30.80 0.18 -1.45 16 23 C -0.11 -2.04 5.73 30.65 0.18 -1.86 16 24 C 0.07 1.46 2.20 44.68 0.10 1.56 16 25 H 0.07 1.22 7.98 -2.39 -0.02 1.20 16 26 C 0.41 21.70 2.81 71.98 0.20 21.90 16 27 F -0.22 -11.62 15.67 44.97 0.70 -10.92 16 28 F -0.15 -8.66 12.91 44.97 0.58 -8.08 16 29 F -0.20 -10.06 16.94 44.97 0.76 -9.30 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.41 13.68 8.55 -92.71 -0.79 12.89 16 32 H 0.41 8.69 8.62 -92.71 -0.80 7.89 16 33 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.07 1.77 8.06 -2.39 -0.02 1.75 16 35 H 0.05 0.86 8.04 -2.39 -0.02 0.84 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.04 0.52 8.05 -2.38 -0.02 0.50 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -66.65 358.07 -0.49 -67.14 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.55 Total: 27.70 kcal Atomic # 6 Polarization: 35.20 SS G_CDS: 4.51 Total: 39.71 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -8.46 Total: -117.30 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.06 Total: -31.37 kcal Atomic # 9 Polarization: -30.34 SS G_CDS: 2.05 Total: -28.29 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.40 kcal Total: -66.65 -0.49 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.314 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds