Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99569 * 2 1 4 4 H 1.48501 * 109.47053 * 90.06756 * 3 2 1 5 5 H 1.48490 * 109.47470 * 330.06253 * 3 2 1 6 6 H 1.48506 * 109.46909 * 210.06116 * 3 2 1 7 7 C 1.37878 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99776 * 4.42359 * 7 2 1 9 9 C 1.50693 * 120.00374 * 184.42604 * 7 2 1 10 10 H 1.09007 * 109.46766 * 24.75259 * 9 7 2 11 11 N 1.46503 * 109.47000 * 264.75853 * 9 7 2 12 12 C 1.34783 * 119.99825 * 155.00060 * 11 9 7 13 13 O 1.21579 * 120.00046 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99549 * 179.97438 * 12 11 9 15 15 C 1.46498 * 119.99968 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.43436 * 323.90874 * 15 14 12 17 17 C 1.54989 * 110.48823 * 86.44802 * 15 14 12 18 18 C 1.55187 * 104.93415 * 116.18547 * 17 15 14 19 19 N 1.47107 * 103.52588 * 336.00624 * 18 17 15 20 20 C 1.45671 * 116.52493 * 162.38462 * 19 18 17 21 21 C 1.53617 * 107.80289 * 177.35720 * 20 19 18 22 22 C 1.52816 * 110.71408 * 57.37067 * 21 20 19 23 23 C 1.53669 * 110.60631 * 306.26053 * 22 21 20 24 24 C 1.48723 * 103.69347 * 42.22709 * 19 18 17 25 25 H 1.09006 * 110.33504 * 73.85108 * 24 19 18 26 26 C 1.52996 * 109.47418 * 144.75467 * 9 7 2 27 27 F 1.39892 * 109.47186 * 65.14060 * 26 9 7 28 28 F 1.39906 * 109.47272 * 185.14261 * 26 9 7 29 29 F 1.39901 * 109.47005 * 305.13670 * 26 9 7 30 30 H 0.97003 * 120.00097 * 359.97438 * 1 2 3 31 31 H 0.96992 * 119.99942 * 334.99434 * 11 9 7 32 32 H 0.97002 * 120.00072 * 359.97438 * 14 12 11 33 33 H 1.09004 * 110.34843 * 235.04462 * 17 15 14 34 34 H 1.09003 * 110.35278 * 357.21476 * 17 15 14 35 35 H 1.09007 * 110.61585 * 94.51325 * 18 17 15 36 36 H 1.09002 * 110.61521 * 217.33849 * 18 17 15 37 37 H 1.09002 * 109.79096 * 296.92919 * 20 19 18 38 38 H 1.08997 * 109.79629 * 57.77572 * 20 19 18 39 39 H 1.09005 * 109.23035 * 177.68706 * 21 20 19 40 40 H 1.09002 * 109.22945 * 297.09291 * 21 20 19 41 41 H 1.09005 * 109.24995 * 66.55153 * 22 21 20 42 42 H 1.08997 * 109.25356 * 186.00642 * 22 21 20 43 43 H 1.08992 * 109.83873 * 175.63958 * 23 22 21 44 44 H 1.09000 * 109.83272 * 296.53755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4980 2.0456 1.4001 5 1 1.4459 2.6530 -0.6987 6 1 3.5460 1.4406 -0.7014 7 6 2.0046 -1.1940 -0.0005 8 1 1.4670 -2.1279 -0.0731 9 6 3.5082 -1.1960 0.1002 10 1 3.8407 -0.2807 0.5899 11 7 4.0875 -1.2691 -1.2435 12 6 5.3280 -0.7929 -1.4693 13 8 5.9661 -0.3024 -0.5580 14 7 5.8611 -0.8606 -2.7053 15 6 7.2093 -0.3426 -2.9509 16 1 7.3899 0.5486 -2.3499 17 6 8.2719 -1.4283 -2.6439 18 6 8.9585 -1.7124 -4.0064 19 7 7.9457 -1.3069 -4.9932 20 6 8.4168 -1.0783 -6.3525 21 6 7.1972 -0.7337 -7.2206 22 6 6.4622 0.4838 -6.6613 23 6 6.1095 0.2696 -5.1810 24 6 7.4036 -0.0373 -4.4400 25 1 8.1240 0.7704 -4.5694 26 6 3.9630 -2.4063 0.9182 27 9 3.6393 -3.5815 0.2317 28 9 5.3473 -2.3453 1.1112 29 9 3.3183 -2.3989 2.1598 30 1 -0.4850 0.8401 0.0004 31 1 3.5783 -1.6602 -1.9705 32 1 5.3521 -1.2524 -3.4322 33 1 8.9994 -1.0538 -1.9238 34 1 7.7930 -2.3306 -2.2636 35 1 9.8613 -1.1111 -4.1140 36 1 9.1910 -2.7727 -4.1052 37 1 9.1238 -0.2487 -6.3635 38 1 8.8980 -1.9793 -6.7329 39 1 7.5289 -0.5174 -8.2362 40 1 6.5173 -1.5855 -7.2389 41 1 7.0998 1.3629 -6.7552 42 1 5.5456 0.6425 -7.2292 43 1 5.6557 1.1733 -4.7744 44 1 5.4183 -0.5675 -5.0829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932925197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = -204.256238 kcal Electronic energy + Delta-G solvation = -31148.011144 eV Core-core repulsion = 26490.843454 eV Total energy + Delta-G solvation = -4657.167690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.83360 -48.33772 -48.32938 -41.59959 -40.30169 -36.84902 -36.06329 -34.95098 -34.42343 -32.28987 -30.53333 -30.11978 -27.58220 -26.86088 -24.03703 -23.54422 -22.64181 -22.11221 -21.64577 -20.57446 -20.10348 -19.34210 -19.04842 -18.56805 -18.35298 -17.47373 -16.85850 -16.46896 -16.08541 -15.90808 -15.75640 -15.36629 -15.24648 -15.21599 -14.88665 -14.78593 -14.74123 -14.53008 -14.48003 -14.45494 -14.36315 -14.24640 -13.65241 -13.47497 -13.25519 -13.05650 -12.92855 -12.54685 -12.21406 -12.09524 -11.98174 -11.96041 -11.79405 -11.50739 -11.38066 -11.30974 -11.19706 -10.97851 -10.28398 -9.77564 -9.34738 -8.53829 -6.72256 1.25916 1.33924 1.46835 1.71404 1.99234 2.19057 2.33859 2.84706 2.98376 3.18560 3.38902 3.43845 3.47562 3.65697 3.80352 3.98762 4.03793 4.15619 4.22824 4.26063 4.35036 4.40369 4.49148 4.57769 4.69204 4.77166 4.84041 4.89421 4.95229 4.97717 5.04678 5.10674 5.15128 5.26462 5.32056 5.48634 5.55016 5.64537 5.84211 5.92472 6.19713 6.28110 6.45220 7.01411 7.22094 7.69079 8.58540 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.004059 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.255013 B = 6897.129559 C = 7976.025344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.064 3.936 3 Si 0.925 3.075 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.232 3.768 10 H 0.075 0.925 11 N -0.727 5.727 12 C 0.692 3.308 13 O -0.628 6.628 14 N -0.720 5.720 15 C 0.164 3.836 16 H 0.074 0.926 17 C -0.131 4.131 18 C 0.052 3.948 19 N -0.531 5.531 20 C 0.054 3.946 21 C -0.112 4.112 22 C -0.116 4.116 23 C -0.106 4.106 24 C 0.064 3.936 25 H 0.071 0.929 26 C 0.438 3.562 27 F -0.188 7.188 28 F -0.193 7.193 29 F -0.187 7.187 30 H 0.280 0.720 31 H 0.407 0.593 32 H 0.407 0.593 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.927 0.150 -15.048 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.126 3.874 10 H 0.093 0.907 11 N -0.382 5.382 12 C 0.392 3.608 13 O -0.510 6.510 14 N -0.378 5.378 15 C 0.058 3.942 16 H 0.093 0.907 17 C -0.171 4.171 18 C -0.076 4.076 19 N -0.256 5.256 20 C -0.074 4.074 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.044 4.044 25 H 0.089 0.911 26 C 0.382 3.618 27 F -0.170 7.170 28 F -0.174 7.174 29 F -0.168 7.168 30 H 0.090 0.910 31 H 0.244 0.756 32 H 0.245 0.755 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.977 0.254 -14.309 21.450 hybrid contribution 0.231 0.598 0.041 0.643 sum 16.209 0.853 -14.268 21.611 Atomic orbital electron populations 1.69934 1.07661 1.29352 1.46346 1.25539 0.95226 1.01820 0.91659 0.86057 0.79714 0.79823 0.79576 1.19547 1.19565 1.17981 1.20669 0.87072 0.95319 1.54221 0.91605 1.19529 0.94543 0.90973 0.82311 0.90737 1.46219 1.15086 1.64873 1.12038 1.16463 0.81621 0.78915 0.83781 1.90842 1.62692 1.52962 1.44464 1.45110 1.17925 1.65999 1.08718 1.21336 0.80933 0.96231 0.95715 0.90749 1.22992 0.97763 0.98849 0.97470 1.22793 0.93094 1.01646 0.90056 1.63922 1.32480 1.27080 1.02137 1.22100 0.96690 1.00677 0.87889 1.21576 0.96610 0.98106 0.98649 1.21564 1.00838 0.98309 0.94654 1.21444 0.95829 1.01487 0.95660 1.22607 0.98104 0.92221 0.91491 0.91124 1.21689 0.73979 0.86819 0.79348 1.93065 1.92533 1.51755 1.79598 1.93150 1.32117 1.96638 1.95518 1.93095 1.81894 1.96799 1.45040 0.91021 0.75631 0.75490 0.90819 0.92162 0.92859 0.89441 0.94316 0.89864 0.90080 0.91803 0.91858 0.91109 0.91889 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.88 13.96 21.45 0.30 -49.58 16 2 C 0.06 3.37 5.47 84.65 0.46 3.83 16 3 Si 0.92 41.87 26.94 68.60 1.85 43.71 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -11.71 6.95 99.48 0.69 -11.02 16 7 C -0.53 -27.67 8.52 25.60 0.22 -27.46 16 8 H 0.07 3.72 8.01 -2.91 -0.02 3.70 16 9 C 0.23 10.84 1.54 44.24 0.07 10.91 16 10 H 0.07 3.71 5.07 -2.38 -0.01 3.70 16 11 N -0.73 -29.22 4.91 -461.41 -2.27 -31.49 16 12 C 0.69 27.01 8.21 179.05 1.47 28.48 16 13 O -0.63 -29.01 14.62 -3.97 -0.06 -29.07 16 14 N -0.72 -21.25 4.59 -454.18 -2.09 -23.34 16 15 C 0.16 4.23 3.24 45.75 0.15 4.38 16 16 H 0.07 2.21 7.66 -2.39 -0.02 2.19 16 17 C -0.13 -3.12 6.84 32.02 0.22 -2.90 16 18 C 0.05 0.92 6.71 87.01 0.58 1.51 16 19 N -0.53 -9.51 4.84 -864.16 -4.19 -13.70 16 20 C 0.05 0.75 5.87 86.74 0.51 1.26 16 21 C -0.11 -1.43 6.05 30.74 0.19 -1.25 16 22 C -0.12 -1.65 5.95 30.76 0.18 -1.47 16 23 C -0.11 -1.96 5.06 30.57 0.15 -1.81 16 24 C 0.06 1.25 2.42 44.40 0.11 1.36 16 25 H 0.07 1.28 7.98 -2.38 -0.02 1.26 16 26 C 0.44 19.93 2.83 71.98 0.20 20.14 16 27 F -0.19 -8.19 16.93 44.97 0.76 -7.43 16 28 F -0.19 -8.71 15.83 44.97 0.71 -8.00 16 29 F -0.19 -8.71 16.89 44.97 0.76 -7.95 16 30 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.41 14.57 8.61 -92.71 -0.80 13.78 16 32 H 0.41 10.33 6.67 -92.71 -0.62 9.71 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.68 7.97 -2.39 -0.02 1.66 16 35 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 0.50 7.99 -2.39 -0.02 0.48 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 1.36 6.42 -2.39 -0.02 1.34 16 Total: -1.00 -62.22 357.35 -0.08 -62.30 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.38 Total: 27.54 kcal Atomic # 6 Polarization: 32.48 SS G_CDS: 4.52 Total: 36.99 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -8.24 Total: -118.10 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.06 Total: -29.07 kcal Atomic # 9 Polarization: -25.61 SS G_CDS: 2.23 Total: -23.38 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.85 Total: 43.71 kcal Total: -62.22 -0.08 -62.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.955 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds