Wall clock time and date at job start Tue Mar 31 2020 18:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48498 * 109.46612 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47224 * 299.99880 * 3 2 1 6 6 H 1.48498 * 109.47122 * 60.00097 * 3 2 1 7 7 C 1.37880 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00388 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47199 * 300.00238 * 9 7 2 11 11 N 1.46501 * 109.47183 * 180.02562 * 9 7 2 12 12 C 1.34775 * 120.00224 * 155.00294 * 11 9 7 13 13 O 1.21592 * 119.99715 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00230 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99780 * 179.97438 * 14 12 11 16 16 H 1.08991 * 110.54249 * 36.16370 * 15 14 12 17 17 C 1.54987 * 110.48558 * 273.54147 * 15 14 12 18 18 C 1.55197 * 104.93426 * 243.81338 * 17 15 14 19 19 N 1.47094 * 103.52135 * 24.00292 * 18 17 15 20 20 C 1.45368 * 117.11637 * 197.03597 * 19 18 17 21 21 C 1.53628 * 108.39350 * 182.15224 * 20 19 18 22 22 C 1.52814 * 110.69687 * 302.96534 * 21 20 19 23 23 C 1.53665 * 110.61972 * 53.74326 * 22 21 20 24 24 C 1.48723 * 103.70637 * 317.76514 * 19 18 17 25 25 H 1.09005 * 110.34285 * 286.15057 * 24 19 18 26 26 C 1.53001 * 109.47092 * 59.99615 * 9 7 2 27 27 F 1.39900 * 109.47028 * 179.97438 * 26 9 7 28 28 F 1.39895 * 109.47556 * 300.00182 * 26 9 7 29 29 F 1.39901 * 109.47175 * 60.00562 * 26 9 7 30 30 H 0.96999 * 119.99832 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99692 * 334.99071 * 11 9 7 32 32 H 0.97003 * 119.99416 * 359.97438 * 14 12 11 33 33 H 1.09000 * 110.34920 * 124.95665 * 17 15 14 34 34 H 1.09001 * 110.35086 * 2.68296 * 17 15 14 35 35 H 1.09001 * 110.60697 * 142.50462 * 18 17 15 36 36 H 1.08991 * 110.61480 * 265.49099 * 18 17 15 37 37 H 1.09001 * 109.22943 * 62.55542 * 20 19 18 38 38 H 1.08999 * 109.83056 * 302.10059 * 20 19 18 39 39 H 1.08996 * 109.23356 * 182.65148 * 21 20 19 40 40 H 1.09005 * 109.19773 * 63.25267 * 21 20 19 41 41 H 1.09005 * 109.25117 * 293.44446 * 22 21 20 42 42 H 1.08999 * 109.22170 * 174.01541 * 22 21 20 43 43 H 1.08995 * 109.84098 * 184.35672 * 23 22 21 44 44 H 1.09001 * 109.83745 * 63.38854 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0018 12 6 1.8367 -4.8121 0.4952 13 8 0.7160 -4.9699 0.9398 14 7 2.7123 -5.8367 0.4959 15 6 2.3140 -7.1402 1.0328 16 1 1.2691 -7.3462 0.8011 17 6 2.5506 -7.1916 2.5637 18 6 3.6270 -8.2913 2.7653 19 7 4.3195 -8.3367 1.4684 20 6 5.1287 -9.5118 1.1901 21 6 5.7974 -9.3264 -0.1805 22 6 4.7480 -9.0898 -1.2658 23 6 3.8249 -7.9231 -0.8809 24 6 3.2154 -8.2477 0.4760 25 1 2.6708 -9.1908 0.4296 26 6 0.3719 -2.5805 -1.2490 27 9 -0.3271 -3.7923 -1.2493 28 9 -0.5372 -1.5172 -1.2496 29 9 1.1766 -2.5067 -2.3910 30 1 -0.4850 0.8401 -0.0004 31 1 3.0972 -3.4867 -0.3527 32 1 3.6062 -5.7108 0.1408 33 1 1.6302 -7.4629 3.0806 34 1 2.9188 -6.2305 2.9228 35 1 4.3183 -8.0104 3.5599 36 1 3.1588 -9.2509 2.9841 37 1 4.4875 -10.3931 1.1718 38 1 5.8914 -9.6264 1.9604 39 1 6.3706 -10.2209 -0.4243 40 1 6.4698 -8.4695 -0.1383 41 1 4.1515 -9.9934 -1.3921 42 1 5.2494 -8.8563 -2.2050 43 1 3.0356 -7.8150 -1.6247 44 1 4.4021 -7.0007 -0.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932925211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:17 Heat of formation + Delta-G solvation = -160.520106 kcal Electronic energy + Delta-G solvation = -31046.519795 eV Core-core repulsion = 26391.248646 eV Total energy + Delta-G solvation = -4655.271149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.26939 -45.91971 -45.54249 -40.52193 -38.84592 -35.51746 -34.50340 -33.79181 -32.51348 -31.07707 -29.37934 -28.24726 -26.51975 -24.49816 -23.29549 -21.98532 -21.84671 -20.75083 -20.34151 -19.37764 -18.32240 -16.88530 -16.77130 -16.54230 -16.29075 -15.87447 -15.48612 -15.27315 -14.84866 -14.58233 -14.39363 -14.24996 -13.65914 -13.61247 -13.43240 -13.11107 -12.83243 -12.70720 -12.45721 -12.32435 -12.28252 -12.20935 -12.08623 -11.90583 -11.75148 -11.40978 -11.26911 -11.12701 -11.05866 -10.83429 -10.77083 -10.72377 -10.57114 -10.50006 -10.35167 -9.59227 -9.44524 -8.76352 -8.68061 -8.51472 -8.08430 -6.19705 -4.42859 3.20203 3.24218 3.28992 3.34308 3.74858 3.85551 4.22525 4.34726 4.47584 4.64472 4.68264 4.84796 4.88797 4.97545 5.00393 5.01704 5.11473 5.13775 5.29531 5.33713 5.48906 5.55689 5.66115 5.67754 5.77610 5.82098 5.89096 5.90395 5.94828 5.95689 6.03333 6.16385 6.24520 6.29352 6.68661 6.93044 6.97307 7.05570 7.29487 7.45154 7.67380 7.78178 8.54897 8.75779 9.20915 9.34059 10.71993 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.003209 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.863303 B = 8723.551701 C = 8899.924829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.550 4.550 8 H 0.077 0.923 9 C 0.263 3.737 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.587 6.587 14 N -0.739 5.739 15 C 0.174 3.826 16 H 0.094 0.906 17 C -0.134 4.134 18 C 0.046 3.954 19 N -0.527 5.527 20 C 0.058 3.942 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.104 4.104 24 C 0.056 3.944 25 H 0.060 0.940 26 C 0.416 3.584 27 F -0.217 7.217 28 F -0.138 7.138 29 F -0.211 7.211 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.395 0.605 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -16.710 0.792 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.102 0.898 11 N -0.379 5.379 12 C 0.398 3.602 13 O -0.464 6.464 14 N -0.396 5.396 15 C 0.067 3.933 16 H 0.111 0.889 17 C -0.173 4.173 18 C -0.082 4.082 19 N -0.252 5.252 20 C -0.070 4.070 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.052 4.052 25 H 0.078 0.922 26 C 0.359 3.641 27 F -0.199 7.199 28 F -0.119 7.119 29 F -0.193 7.193 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.231 0.769 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.050 -16.315 1.176 18.694 hybrid contribution 0.568 0.171 -0.508 0.781 sum 9.618 -16.144 0.668 18.803 Atomic orbital electron populations 1.70424 1.05828 1.27156 1.43919 1.25082 0.95140 1.00066 0.94141 0.86167 0.79806 0.82061 0.77830 1.19434 1.20618 1.20609 1.20924 0.93810 0.88136 1.55830 0.90480 1.19574 0.88277 0.85011 0.91504 0.89789 1.45253 1.17263 1.09754 1.65667 1.16096 0.84391 0.80578 0.79099 1.90906 1.19788 1.82846 1.52864 1.45141 1.16166 1.10030 1.68275 1.21143 0.98405 0.81620 0.92170 0.88851 1.23074 0.98152 0.99523 0.96564 1.22829 0.95829 0.97803 0.91697 1.63500 1.19890 1.39157 1.02685 1.21921 0.96720 0.90699 0.97699 1.21582 0.98073 1.01957 0.93618 1.21591 0.97368 0.98382 0.98443 1.21437 0.98948 0.98802 0.95033 1.22682 0.91564 0.97694 0.93270 0.92167 1.23193 0.80907 0.72770 0.87212 1.93069 1.81481 1.48336 1.96969 1.93397 1.68453 1.53866 1.96212 1.92980 1.74442 1.96198 1.55647 0.92243 0.77327 0.76939 0.90729 0.90091 0.90195 0.94312 0.95192 0.90826 0.91789 0.91103 0.92484 0.91678 0.90974 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.18 9.50 55.43 0.53 -22.66 16 2 C 0.06 1.68 5.20 -17.81 -0.09 1.59 16 3 Si 0.91 20.20 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -14.10 8.46 -34.44 -0.29 -14.39 16 8 H 0.08 1.87 7.74 -52.49 -0.41 1.47 16 9 C 0.26 6.60 2.21 -69.08 -0.15 6.45 16 10 H 0.08 2.38 7.58 -51.93 -0.39 1.98 16 11 N -0.73 -15.02 4.99 -59.81 -0.30 -15.32 16 12 C 0.70 13.97 8.09 -86.92 -0.70 13.26 16 13 O -0.59 -14.06 14.63 5.29 0.08 -13.98 16 14 N -0.74 -11.00 4.59 -57.52 -0.26 -11.27 16 15 C 0.17 2.30 3.23 -66.74 -0.22 2.08 16 16 H 0.09 1.40 7.67 -51.93 -0.40 1.00 16 17 C -0.13 -1.63 6.84 -24.52 -0.17 -1.80 16 18 C 0.05 0.46 6.74 -2.55 -0.02 0.44 16 19 N -0.53 -5.27 4.83 -224.73 -1.08 -6.35 16 20 C 0.06 0.48 5.88 -4.32 -0.03 0.46 16 21 C -0.11 -0.88 6.07 -26.50 -0.16 -1.04 16 22 C -0.12 -0.97 5.95 -26.48 -0.16 -1.13 16 23 C -0.10 -1.02 5.09 -26.77 -0.14 -1.16 16 24 C 0.06 0.59 2.39 -66.95 -0.16 0.43 16 25 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 26 C 0.42 10.81 2.81 37.16 0.10 10.91 16 27 F -0.22 -5.62 15.68 2.25 0.04 -5.58 16 28 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 29 F -0.21 -5.25 16.94 2.25 0.04 -5.22 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 7.04 8.55 -40.82 -0.35 6.69 16 32 H 0.40 5.09 6.69 -40.82 -0.27 4.81 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.13 7.97 -51.93 -0.41 0.71 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.03 0.25 8.00 -51.93 -0.42 -0.17 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.76 6.42 -51.93 -0.33 0.43 16 LS Contribution 354.09 15.07 5.34 5.34 Total: -1.00 -30.22 354.09 -9.14 -39.36 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.34 Total: 8.24 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: -2.18 Total: 16.11 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -1.12 Total: -55.59 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.08 Total: -13.98 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.64 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.22 -9.14 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.157 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds