Wall clock time and date at job start Tue Mar 31 2020 18:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48498 * 109.46612 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47224 * 299.99880 * 3 2 1 6 6 H 1.48498 * 109.47122 * 60.00097 * 3 2 1 7 7 C 1.37880 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00388 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47199 * 300.00238 * 9 7 2 11 11 N 1.46501 * 109.47183 * 180.02562 * 9 7 2 12 12 C 1.34775 * 120.00224 * 155.00294 * 11 9 7 13 13 O 1.21592 * 119.99715 * 359.97438 * 12 11 9 14 14 N 1.34775 * 120.00230 * 179.97438 * 12 11 9 15 15 C 1.46499 * 119.99780 * 179.97438 * 14 12 11 16 16 H 1.08991 * 110.54249 * 36.16370 * 15 14 12 17 17 C 1.54987 * 110.48558 * 273.54147 * 15 14 12 18 18 C 1.55197 * 104.93426 * 243.81338 * 17 15 14 19 19 N 1.47094 * 103.52135 * 24.00292 * 18 17 15 20 20 C 1.45368 * 117.11637 * 197.03597 * 19 18 17 21 21 C 1.53628 * 108.39350 * 182.15224 * 20 19 18 22 22 C 1.52814 * 110.69687 * 302.96534 * 21 20 19 23 23 C 1.53665 * 110.61972 * 53.74326 * 22 21 20 24 24 C 1.48723 * 103.70637 * 317.76514 * 19 18 17 25 25 H 1.09005 * 110.34285 * 286.15057 * 24 19 18 26 26 C 1.53001 * 109.47092 * 59.99615 * 9 7 2 27 27 F 1.39900 * 109.47028 * 179.97438 * 26 9 7 28 28 F 1.39895 * 109.47556 * 300.00182 * 26 9 7 29 29 F 1.39901 * 109.47175 * 60.00562 * 26 9 7 30 30 H 0.96999 * 119.99832 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99692 * 334.99071 * 11 9 7 32 32 H 0.97003 * 119.99416 * 359.97438 * 14 12 11 33 33 H 1.09000 * 110.34920 * 124.95665 * 17 15 14 34 34 H 1.09001 * 110.35086 * 2.68296 * 17 15 14 35 35 H 1.09001 * 110.60697 * 142.50462 * 18 17 15 36 36 H 1.08991 * 110.61480 * 265.49099 * 18 17 15 37 37 H 1.09001 * 109.22943 * 62.55542 * 20 19 18 38 38 H 1.08999 * 109.83056 * 302.10059 * 20 19 18 39 39 H 1.08996 * 109.23356 * 182.65148 * 21 20 19 40 40 H 1.09005 * 109.19773 * 63.25267 * 21 20 19 41 41 H 1.09005 * 109.25117 * 293.44446 * 22 21 20 42 42 H 1.08999 * 109.22170 * 174.01541 * 22 21 20 43 43 H 1.08995 * 109.84098 * 184.35672 * 23 22 21 44 44 H 1.09001 * 109.83745 * 63.38854 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0018 12 6 1.8367 -4.8121 0.4952 13 8 0.7160 -4.9699 0.9398 14 7 2.7123 -5.8367 0.4959 15 6 2.3140 -7.1402 1.0328 16 1 1.2691 -7.3462 0.8011 17 6 2.5506 -7.1916 2.5637 18 6 3.6270 -8.2913 2.7653 19 7 4.3195 -8.3367 1.4684 20 6 5.1287 -9.5118 1.1901 21 6 5.7974 -9.3264 -0.1805 22 6 4.7480 -9.0898 -1.2658 23 6 3.8249 -7.9231 -0.8809 24 6 3.2154 -8.2477 0.4760 25 1 2.6708 -9.1908 0.4296 26 6 0.3719 -2.5805 -1.2490 27 9 -0.3271 -3.7923 -1.2493 28 9 -0.5372 -1.5172 -1.2496 29 9 1.1766 -2.5067 -2.3910 30 1 -0.4850 0.8401 -0.0004 31 1 3.0972 -3.4867 -0.3527 32 1 3.6062 -5.7108 0.1408 33 1 1.6302 -7.4629 3.0806 34 1 2.9188 -6.2305 2.9228 35 1 4.3183 -8.0104 3.5599 36 1 3.1588 -9.2509 2.9841 37 1 4.4875 -10.3931 1.1718 38 1 5.8914 -9.6264 1.9604 39 1 6.3706 -10.2209 -0.4243 40 1 6.4698 -8.4695 -0.1383 41 1 4.1515 -9.9934 -1.3921 42 1 5.2494 -8.8563 -2.2050 43 1 3.0356 -7.8150 -1.6247 44 1 4.4021 -7.0007 -0.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932925211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:17 Heat of formation + Delta-G solvation = -180.967718 kcal Electronic energy + Delta-G solvation = -31047.406470 eV Core-core repulsion = 26391.248646 eV Total energy + Delta-G solvation = -4656.157823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.37475 -48.00539 -47.69143 -41.58148 -40.26637 -36.75164 -36.04481 -34.95735 -34.35467 -32.16358 -30.26402 -29.91636 -27.56237 -26.53911 -24.03161 -23.74978 -22.64884 -22.08990 -21.62510 -20.45917 -19.89089 -18.83096 -18.76029 -18.54150 -17.89449 -17.03737 -16.82611 -16.66865 -16.09031 -15.96799 -15.55780 -15.41317 -15.02205 -14.93260 -14.71754 -14.52787 -14.42240 -14.30901 -14.25287 -14.24653 -13.99145 -13.83986 -13.47097 -13.32263 -13.05755 -12.93182 -12.69486 -12.62313 -12.20739 -12.18125 -12.07450 -11.95461 -11.52735 -11.49040 -11.37127 -11.23156 -11.15456 -10.67411 -10.24837 -9.75231 -9.31027 -8.18917 -6.49260 1.47536 1.48573 1.61214 1.78676 2.19206 2.39018 2.60405 2.97025 2.97947 3.34246 3.49211 3.67079 3.82944 3.91801 3.99591 4.05253 4.16718 4.24200 4.24350 4.27549 4.35983 4.49742 4.58918 4.70444 4.76602 4.84604 4.90733 4.92702 4.99194 5.06280 5.12066 5.16346 5.27403 5.33175 5.47888 5.49790 5.55915 5.64999 5.68550 5.92674 6.19679 6.31800 6.56335 7.19526 7.25208 7.72007 8.74143 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.003209 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.863303 B = 8723.551701 C = 8899.924829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.271 3.729 10 H 0.045 0.955 11 N -0.721 5.721 12 C 0.696 3.304 13 O -0.629 6.629 14 N -0.716 5.716 15 C 0.165 3.835 16 H 0.072 0.928 17 C -0.132 4.132 18 C 0.055 3.945 19 N -0.534 5.534 20 C 0.056 3.944 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.105 4.105 24 C 0.066 3.934 25 H 0.069 0.931 26 C 0.413 3.587 27 F -0.219 7.219 28 F -0.151 7.151 29 F -0.203 7.203 30 H 0.268 0.732 31 H 0.408 0.592 32 H 0.408 0.592 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.525 -17.659 0.589 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.596 4.596 8 H 0.109 0.891 9 C 0.163 3.837 10 H 0.063 0.937 11 N -0.375 5.375 12 C 0.396 3.604 13 O -0.510 6.510 14 N -0.373 5.373 15 C 0.059 3.941 16 H 0.090 0.910 17 C -0.172 4.172 18 C -0.073 4.073 19 N -0.259 5.259 20 C -0.071 4.071 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.043 4.043 25 H 0.086 0.914 26 C 0.356 3.644 27 F -0.201 7.201 28 F -0.133 7.133 29 F -0.185 7.185 30 H 0.078 0.922 31 H 0.244 0.756 32 H 0.246 0.754 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.710 -17.317 0.964 20.927 hybrid contribution -0.263 0.385 -0.439 0.641 sum 11.446 -16.932 0.525 20.444 Atomic orbital electron populations 1.70551 1.07484 1.28026 1.44863 1.26000 0.95890 1.03652 0.93522 0.85105 0.79125 0.77453 0.77588 1.17891 1.20689 1.20361 1.21248 0.94514 0.88290 1.55524 0.89052 1.19152 0.88405 0.86595 0.89519 0.93694 1.44988 1.17247 1.09186 1.66056 1.16248 0.84393 0.81053 0.78670 1.90876 1.21921 1.83541 1.54644 1.44966 1.15820 1.09401 1.67111 1.21316 0.98114 0.81402 0.93288 0.91021 1.23003 0.99051 0.99644 0.95486 1.22766 0.95177 0.97318 0.92019 1.63506 1.19583 1.40518 1.02314 1.22015 0.96706 0.89997 0.98424 1.21574 0.97791 1.02579 0.92955 1.21569 0.97216 0.97640 0.98986 1.21439 0.99021 0.99570 0.94304 1.22575 0.91378 0.96573 0.93788 0.91354 1.23352 0.80866 0.72330 0.87838 1.93061 1.81614 1.48381 1.97016 1.93370 1.69016 1.54565 1.96325 1.92980 1.74128 1.96156 1.55262 0.92220 0.75570 0.75400 0.90923 0.91985 0.89321 0.92958 0.94643 0.89841 0.90015 0.91659 0.91946 0.90956 0.91849 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.01 9.50 21.45 0.20 -48.80 16 2 C 0.01 0.75 5.20 84.65 0.44 1.19 16 3 Si 0.98 40.82 29.54 68.60 2.03 42.85 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.56 -28.52 8.46 25.60 0.22 -28.30 16 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 9 C 0.27 13.89 2.21 44.24 0.10 13.99 16 10 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 11 N -0.72 -29.94 4.99 -461.41 -2.30 -32.24 16 12 C 0.70 28.32 8.09 179.06 1.45 29.77 16 13 O -0.63 -31.24 14.63 -4.00 -0.06 -31.30 16 14 N -0.72 -21.23 4.59 -454.15 -2.08 -23.31 16 15 C 0.17 4.35 3.23 45.76 0.15 4.49 16 16 H 0.07 2.22 7.67 -2.39 -0.02 2.20 16 17 C -0.13 -3.20 6.84 32.03 0.22 -2.98 16 18 C 0.05 0.98 6.74 87.02 0.59 1.57 16 19 N -0.53 -9.49 4.83 -864.91 -4.18 -13.67 16 20 C 0.06 0.77 5.88 86.80 0.51 1.28 16 21 C -0.11 -1.37 6.07 30.74 0.19 -1.18 16 22 C -0.12 -1.59 5.95 30.76 0.18 -1.41 16 23 C -0.11 -1.89 5.09 30.57 0.16 -1.74 16 24 C 0.07 1.28 2.39 44.40 0.11 1.39 16 25 H 0.07 1.26 8.00 -2.38 -0.02 1.24 16 26 C 0.41 21.82 2.81 71.98 0.20 22.02 16 27 F -0.22 -11.60 15.68 44.97 0.70 -10.90 16 28 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 29 F -0.20 -10.10 16.94 44.97 0.76 -9.34 16 30 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.41 14.28 8.55 -92.71 -0.79 13.49 16 32 H 0.41 10.10 6.69 -92.71 -0.62 9.48 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.74 7.97 -2.39 -0.02 1.72 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.04 0.46 8.00 -2.39 -0.02 0.45 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.31 6.42 -2.39 -0.02 1.30 16 Total: -1.00 -65.61 354.09 -0.21 -65.82 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.37 Total: 28.92 kcal Atomic # 6 Polarization: 35.59 SS G_CDS: 4.50 Total: 40.09 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -8.36 Total: -118.02 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.06 Total: -31.30 kcal Atomic # 9 Polarization: -30.40 SS G_CDS: 2.05 Total: -28.35 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -65.61 -0.21 -65.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.143 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds