Wall clock time and date at job start Tue Mar 31 2020 18:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46505 * 109.47262 * 179.97438 * 9 7 2 12 12 C 1.34769 * 119.99798 * 154.99826 * 11 9 7 13 13 O 1.21580 * 120.00601 * 0.02562 * 12 11 9 14 14 N 1.34781 * 119.99697 * 179.97438 * 12 11 9 15 15 C 1.46503 * 119.99998 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.24574 * 325.00307 * 15 14 12 17 17 C 1.52824 * 109.24634 * 84.46486 * 15 14 12 18 18 C 1.53631 * 110.65017 * 174.20181 * 17 15 14 19 19 N 1.45537 * 107.83077 * 302.80364 * 18 17 15 20 20 C 1.46332 * 117.21677 * 185.55786 * 19 18 17 21 21 C 1.54800 * 105.95943 * 208.06991 * 20 19 18 22 22 C 1.55327 * 104.99219 * 3.64683 * 21 20 19 23 23 C 1.48660 * 109.70527 * 65.33450 * 19 18 17 24 24 H 1.08997 * 111.11151 * 51.92059 * 23 19 18 25 25 C 1.52360 * 107.35267 * 290.45691 * 23 19 18 26 26 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 27 27 F 1.39905 * 109.47157 * 60.00224 * 26 9 7 28 28 F 1.39900 * 109.47010 * 179.97438 * 26 9 7 29 29 F 1.39897 * 109.47422 * 300.00142 * 26 9 7 30 30 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99239 * 334.99801 * 11 9 7 32 32 H 0.96998 * 120.00231 * 0.02562 * 14 12 11 33 33 H 1.09006 * 109.23972 * 294.45919 * 17 15 14 34 34 H 1.08996 * 109.24992 * 53.85915 * 17 15 14 35 35 H 1.08999 * 109.78331 * 183.23522 * 18 17 15 36 36 H 1.08995 * 109.86092 * 62.42416 * 18 17 15 37 37 H 1.09002 * 110.15603 * 327.19238 * 20 19 18 38 38 H 1.09000 * 110.15581 * 88.94812 * 20 19 18 39 39 H 1.09005 * 110.33573 * 122.52848 * 21 20 19 40 40 H 1.09003 * 110.33784 * 244.66170 * 21 20 19 41 41 H 1.08998 * 110.90982 * 263.99565 * 22 21 20 42 42 H 1.09007 * 110.90537 * 140.39442 * 22 21 20 43 43 H 1.08997 * 109.83814 * 303.31322 * 25 23 19 44 44 H 1.09005 * 109.83634 * 182.35755 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8369 -4.8122 0.4938 13 8 0.7164 -4.9705 0.9384 14 7 2.7126 -5.8368 0.4933 15 6 2.3148 -7.1406 1.0301 16 1 1.6427 -6.9914 1.8751 17 6 1.5894 -7.9329 -0.0570 18 6 1.2845 -9.3596 0.4245 19 7 2.5449 -9.9811 0.8029 20 6 2.5080 -11.3952 1.1773 21 6 3.6814 -11.6048 2.1649 22 6 4.2922 -10.1913 2.3691 23 6 3.1198 -9.2741 1.9775 24 1 2.3895 -9.1923 2.7825 25 6 3.5656 -7.8959 1.5049 26 6 0.3719 -2.5804 -1.2489 27 9 1.1765 -2.5065 -2.3910 28 9 -0.3272 -3.7922 -1.2492 29 9 -0.5372 -1.5171 -1.2495 30 1 -0.4850 0.8400 -0.0004 31 1 3.0969 -3.4865 -0.3546 32 1 3.6064 -5.7108 0.1383 33 1 0.6542 -7.4303 -0.3042 34 1 2.2172 -7.9800 -0.9467 35 1 0.8194 -9.9290 -0.3801 36 1 0.6170 -9.3251 1.2855 37 1 1.5612 -11.6304 1.6637 38 1 2.6433 -12.0210 0.2952 39 1 3.3134 -11.9990 3.1123 40 1 4.4214 -12.2807 1.7361 41 1 5.1448 -10.0368 1.7079 42 1 4.5760 -10.0369 3.4102 43 1 4.2712 -7.9980 0.6804 44 1 4.0333 -7.3560 2.3282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932927278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:00 Heat of formation + Delta-G solvation = -163.991384 kcal Electronic energy + Delta-G solvation = -30575.445781 eV Core-core repulsion = 25920.024107 eV Total energy + Delta-G solvation = -4655.421674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.28275 -45.93311 -45.55638 -40.31670 -39.09094 -35.90204 -34.43504 -33.19760 -32.52557 -31.58049 -29.16318 -28.15109 -26.76037 -24.51891 -23.17308 -22.19230 -21.27440 -20.93642 -20.17127 -19.91526 -18.25378 -16.84780 -16.76296 -16.53721 -16.21378 -15.96411 -15.77724 -15.29779 -15.06247 -14.77723 -14.39094 -13.93183 -13.80977 -13.50020 -13.13136 -13.02641 -12.85121 -12.79880 -12.50924 -12.44692 -12.33401 -12.22835 -11.92212 -11.76654 -11.73386 -11.47179 -11.33567 -11.22644 -11.11831 -10.88399 -10.85577 -10.81725 -10.61828 -10.48867 -10.37186 -9.64106 -9.47537 -8.74152 -8.67985 -8.49706 -8.11746 -6.20977 -4.44798 3.18708 3.21557 3.26377 3.29747 3.75531 3.83045 4.20686 4.32001 4.43550 4.61751 4.68815 4.78739 4.82595 4.95829 4.97072 5.05878 5.14621 5.25241 5.32235 5.39730 5.41485 5.58472 5.60381 5.63925 5.67689 5.79669 5.87403 5.89334 5.92402 5.93888 6.03351 6.20676 6.27633 6.36701 6.78735 6.89643 6.90088 7.08155 7.26132 7.41752 7.65361 7.74293 8.52119 8.72023 9.18541 9.30557 10.70615 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025509 B = 0.002780 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.381585 B =10069.061263 C =10732.007184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.263 3.737 10 H 0.084 0.916 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.585 6.585 14 N -0.749 5.749 15 C 0.168 3.832 16 H 0.081 0.919 17 C -0.126 4.126 18 C 0.065 3.935 19 N -0.538 5.538 20 C 0.049 3.951 21 C -0.128 4.128 22 C -0.114 4.114 23 C 0.068 3.932 24 H 0.057 0.943 25 C -0.111 4.111 26 C 0.416 3.584 27 F -0.211 7.211 28 F -0.217 7.217 29 F -0.138 7.138 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.392 0.608 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -18.161 2.778 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.094 0.906 9 C 0.157 3.843 10 H 0.102 0.898 11 N -0.380 5.380 12 C 0.399 3.601 13 O -0.463 6.463 14 N -0.405 5.405 15 C 0.062 3.938 16 H 0.099 0.901 17 C -0.165 4.165 18 C -0.064 4.064 19 N -0.263 5.263 20 C -0.079 4.079 21 C -0.166 4.166 22 C -0.152 4.152 23 C -0.040 4.040 24 H 0.075 0.925 25 C -0.149 4.149 26 C 0.359 3.641 27 F -0.193 7.193 28 F -0.199 7.199 29 F -0.119 7.119 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.236 -18.105 2.725 19.687 hybrid contribution 0.403 0.825 -0.108 0.924 sum 7.640 -17.280 2.617 19.074 Atomic orbital electron populations 1.70397 1.05841 1.27426 1.43644 1.25078 0.95148 1.00062 0.94109 0.86277 0.79328 0.81373 0.78869 1.19855 1.20893 1.19814 1.20849 0.93748 0.88177 1.56178 0.90572 1.19567 0.88255 0.84960 0.91514 0.89805 1.45271 1.17339 1.09790 1.65564 1.16096 0.84456 0.80475 0.79117 1.90904 1.19608 1.83011 1.52728 1.45180 1.16148 1.10385 1.68744 1.20735 0.95659 0.81269 0.96115 0.90050 1.22023 1.01790 0.93541 0.99147 1.21906 0.89582 0.95168 0.99733 1.62803 1.26305 1.02093 1.35146 1.22485 0.97364 0.89679 0.98345 1.22629 0.97543 0.97585 0.98878 1.22350 0.97606 0.93886 1.01343 1.22514 0.96225 0.93604 0.91652 0.92490 1.21793 0.97510 0.94069 1.01544 1.23185 0.80906 0.72776 0.87212 1.92983 1.74440 1.96196 1.55636 1.93070 1.81478 1.48334 1.96969 1.93397 1.68451 1.53860 1.96213 0.92089 0.77296 0.77474 0.90541 0.91161 0.90668 0.94644 0.94444 0.90571 0.91591 0.91028 0.90434 0.91055 0.90321 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.20 9.50 55.43 0.53 -22.67 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.55 -14.16 8.46 -34.44 -0.29 -14.45 16 8 H 0.08 1.83 7.74 -52.49 -0.41 1.43 16 9 C 0.26 6.62 2.21 -69.08 -0.15 6.47 16 10 H 0.08 2.37 7.58 -51.93 -0.39 1.98 16 11 N -0.73 -14.99 4.99 -59.81 -0.30 -15.29 16 12 C 0.70 14.01 8.05 -86.92 -0.70 13.31 16 13 O -0.59 -14.09 14.57 5.30 0.08 -14.02 16 14 N -0.75 -11.03 5.07 -58.44 -0.30 -11.32 16 15 C 0.17 2.22 2.50 -67.69 -0.17 2.05 16 16 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 17 C -0.13 -1.65 5.61 -26.49 -0.15 -1.80 16 18 C 0.06 0.72 5.85 -4.23 -0.02 0.69 16 19 N -0.54 -5.43 4.65 -225.07 -1.05 -6.48 16 20 C 0.05 0.41 6.86 -3.18 -0.02 0.39 16 21 C -0.13 -0.89 6.98 -24.55 -0.17 -1.06 16 22 C -0.11 -0.85 6.61 -25.01 -0.17 -1.02 16 23 C 0.07 0.65 2.63 -66.58 -0.18 0.47 16 24 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 25 C -0.11 -1.10 5.14 -26.73 -0.14 -1.24 16 26 C 0.42 10.84 2.81 37.16 0.10 10.94 16 27 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 28 F -0.22 -5.64 15.67 2.25 0.04 -5.60 16 29 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.39 6.96 8.55 -40.82 -0.35 6.61 16 32 H 0.39 4.63 8.62 -40.82 -0.35 4.28 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.41 8.04 -51.93 -0.42 -0.01 16 37 H 0.04 0.31 8.04 -51.93 -0.42 -0.11 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 42 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -30.71 357.95 -9.21 -39.93 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.51 Total: 7.68 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: -2.15 Total: 16.35 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -1.11 Total: -55.76 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 9 Polarization: -14.80 SS G_CDS: 0.10 Total: -14.70 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.71 -9.21 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932927278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.063 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds