Wall clock time and date at job start Tue Mar 31 2020 18:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46505 * 109.47262 * 179.97438 * 9 7 2 12 12 C 1.34769 * 119.99798 * 154.99826 * 11 9 7 13 13 O 1.21580 * 120.00601 * 0.02562 * 12 11 9 14 14 N 1.34781 * 119.99697 * 179.97438 * 12 11 9 15 15 C 1.46503 * 119.99998 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.24574 * 325.00307 * 15 14 12 17 17 C 1.52824 * 109.24634 * 84.46486 * 15 14 12 18 18 C 1.53631 * 110.65017 * 174.20181 * 17 15 14 19 19 N 1.45537 * 107.83077 * 302.80364 * 18 17 15 20 20 C 1.46332 * 117.21677 * 185.55786 * 19 18 17 21 21 C 1.54800 * 105.95943 * 208.06991 * 20 19 18 22 22 C 1.55327 * 104.99219 * 3.64683 * 21 20 19 23 23 C 1.48660 * 109.70527 * 65.33450 * 19 18 17 24 24 H 1.08997 * 111.11151 * 51.92059 * 23 19 18 25 25 C 1.52360 * 107.35267 * 290.45691 * 23 19 18 26 26 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 27 27 F 1.39905 * 109.47157 * 60.00224 * 26 9 7 28 28 F 1.39900 * 109.47010 * 179.97438 * 26 9 7 29 29 F 1.39897 * 109.47422 * 300.00142 * 26 9 7 30 30 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99239 * 334.99801 * 11 9 7 32 32 H 0.96998 * 120.00231 * 0.02562 * 14 12 11 33 33 H 1.09006 * 109.23972 * 294.45919 * 17 15 14 34 34 H 1.08996 * 109.24992 * 53.85915 * 17 15 14 35 35 H 1.08999 * 109.78331 * 183.23522 * 18 17 15 36 36 H 1.08995 * 109.86092 * 62.42416 * 18 17 15 37 37 H 1.09002 * 110.15603 * 327.19238 * 20 19 18 38 38 H 1.09000 * 110.15581 * 88.94812 * 20 19 18 39 39 H 1.09005 * 110.33573 * 122.52848 * 21 20 19 40 40 H 1.09003 * 110.33784 * 244.66170 * 21 20 19 41 41 H 1.08998 * 110.90982 * 263.99565 * 22 21 20 42 42 H 1.09007 * 110.90537 * 140.39442 * 22 21 20 43 43 H 1.08997 * 109.83814 * 303.31322 * 25 23 19 44 44 H 1.09005 * 109.83634 * 182.35755 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 2.2031 -3.6127 0.0005 12 6 1.8369 -4.8122 0.4938 13 8 0.7164 -4.9705 0.9384 14 7 2.7126 -5.8368 0.4933 15 6 2.3148 -7.1406 1.0301 16 1 1.6427 -6.9914 1.8751 17 6 1.5894 -7.9329 -0.0570 18 6 1.2845 -9.3596 0.4245 19 7 2.5449 -9.9811 0.8029 20 6 2.5080 -11.3952 1.1773 21 6 3.6814 -11.6048 2.1649 22 6 4.2922 -10.1913 2.3691 23 6 3.1198 -9.2741 1.9775 24 1 2.3895 -9.1923 2.7825 25 6 3.5656 -7.8959 1.5049 26 6 0.3719 -2.5804 -1.2489 27 9 1.1765 -2.5065 -2.3910 28 9 -0.3272 -3.7922 -1.2492 29 9 -0.5372 -1.5171 -1.2495 30 1 -0.4850 0.8400 -0.0004 31 1 3.0969 -3.4865 -0.3546 32 1 3.6064 -5.7108 0.1383 33 1 0.6542 -7.4303 -0.3042 34 1 2.2172 -7.9800 -0.9467 35 1 0.8194 -9.9290 -0.3801 36 1 0.6170 -9.3251 1.2855 37 1 1.5612 -11.6304 1.6637 38 1 2.6433 -12.0210 0.2952 39 1 3.3134 -11.9990 3.1123 40 1 4.4214 -12.2807 1.7361 41 1 5.1448 -10.0368 1.7079 42 1 4.5760 -10.0369 3.4102 43 1 4.2712 -7.9980 0.6804 44 1 4.0333 -7.3560 2.3282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932927278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:59 Heat of formation + Delta-G solvation = -185.293511 kcal Electronic energy + Delta-G solvation = -30576.369511 eV Core-core repulsion = 25920.024107 eV Total energy + Delta-G solvation = -4656.345404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.39534 -48.02804 -47.71072 -41.39251 -40.42236 -37.15863 -36.18740 -34.58359 -34.01414 -32.63537 -30.36365 -29.56070 -27.71687 -26.55807 -24.18324 -23.69546 -22.49054 -21.87272 -21.48954 -21.00813 -19.88800 -18.85615 -18.75671 -18.53557 -17.83699 -17.04273 -16.83969 -16.64133 -16.42238 -15.98900 -15.77365 -15.43467 -15.10881 -14.94012 -14.79838 -14.56785 -14.44254 -14.28243 -14.21242 -14.01413 -13.96977 -13.84772 -13.57771 -13.29695 -13.03488 -12.76343 -12.60460 -12.52178 -12.22384 -12.20810 -12.14194 -12.00252 -11.66399 -11.58505 -11.51642 -11.39052 -11.17635 -10.66575 -10.26439 -9.75676 -9.29832 -8.19786 -6.50906 1.47311 1.50355 1.58191 1.74287 2.16829 2.38335 2.58147 2.95810 2.97863 3.30183 3.56802 3.71291 3.80986 3.90203 3.93954 4.01686 4.12953 4.21527 4.24874 4.31870 4.35292 4.45593 4.49029 4.69993 4.79453 4.85455 4.86703 4.93772 4.99224 5.04869 5.08154 5.17076 5.22917 5.34871 5.38028 5.45720 5.54132 5.63238 5.66794 6.02103 6.16858 6.28090 6.54343 7.18018 7.24046 7.69080 8.72897 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025509 B = 0.002780 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.381585 B =10069.061263 C =10732.007184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.562 4.562 8 H 0.093 0.907 9 C 0.272 3.728 10 H 0.045 0.955 11 N -0.720 5.720 12 C 0.695 3.305 13 O -0.630 6.630 14 N -0.726 5.726 15 C 0.167 3.833 16 H 0.054 0.946 17 C -0.119 4.119 18 C 0.071 3.929 19 N -0.543 5.543 20 C 0.045 3.955 21 C -0.124 4.124 22 C -0.108 4.108 23 C 0.065 3.935 24 H 0.048 0.952 25 C -0.098 4.098 26 C 0.412 3.588 27 F -0.204 7.204 28 F -0.219 7.219 29 F -0.151 7.151 30 H 0.268 0.732 31 H 0.410 0.590 32 H 0.411 0.589 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.158 -19.049 2.864 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.599 4.599 8 H 0.111 0.889 9 C 0.164 3.836 10 H 0.062 0.938 11 N -0.374 5.374 12 C 0.395 3.605 13 O -0.510 6.510 14 N -0.382 5.382 15 C 0.061 3.939 16 H 0.073 0.927 17 C -0.159 4.159 18 C -0.058 4.058 19 N -0.268 5.268 20 C -0.083 4.083 21 C -0.162 4.162 22 C -0.146 4.146 23 C -0.044 4.044 24 H 0.066 0.934 25 C -0.136 4.136 26 C 0.356 3.644 27 F -0.186 7.186 28 F -0.201 7.201 29 F -0.133 7.133 30 H 0.078 0.922 31 H 0.246 0.754 32 H 0.247 0.753 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.209 -19.046 2.801 21.790 hybrid contribution -0.536 1.011 -0.143 1.154 sum 9.673 -18.034 2.659 20.636 Atomic orbital electron populations 1.70535 1.07538 1.28215 1.44668 1.26020 0.95897 1.03731 0.93467 0.85197 0.77974 0.76671 0.79390 1.19005 1.21069 1.18619 1.21210 0.94591 0.88287 1.55809 0.88888 1.19139 0.88393 0.86610 0.89442 0.93775 1.44996 1.17369 1.09158 1.65921 1.16285 0.84478 0.81035 0.78693 1.90876 1.21871 1.83735 1.54537 1.45014 1.16068 1.09587 1.67555 1.20888 0.97161 0.80640 0.95181 0.92725 1.21907 1.00032 0.94585 0.99329 1.21771 0.90275 0.94058 0.99671 1.62817 1.25231 1.03159 1.35627 1.22591 0.98121 0.88471 0.99107 1.22634 0.97105 0.97541 0.98909 1.22348 0.96661 0.93387 1.02227 1.22579 0.97015 0.93593 0.91187 0.93436 1.21728 0.95690 0.93969 1.02236 1.23380 0.80883 0.72309 0.87870 1.92981 1.74132 1.96156 1.55286 1.93062 1.81636 1.48431 1.97019 1.93371 1.69021 1.54545 1.96325 0.92176 0.75378 0.75279 0.94078 0.90707 0.89944 0.95469 0.94619 0.89991 0.90760 0.89760 0.89952 0.89760 0.89076 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.11 9.50 21.45 0.20 -48.91 16 2 C 0.01 0.73 5.20 84.65 0.44 1.17 16 3 Si 0.98 40.59 29.54 68.60 2.03 42.62 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.29 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.56 -28.60 8.46 25.60 0.22 -28.38 16 8 H 0.09 4.31 7.74 -2.91 -0.02 4.29 16 9 C 0.27 13.93 2.21 44.24 0.10 14.03 16 10 H 0.04 2.62 7.58 -2.39 -0.02 2.60 16 11 N -0.72 -29.68 4.99 -461.42 -2.30 -31.98 16 12 C 0.70 28.23 8.05 179.06 1.44 29.67 16 13 O -0.63 -31.56 14.57 -3.97 -0.06 -31.62 16 14 N -0.73 -20.93 5.07 -457.07 -2.32 -23.24 16 15 C 0.17 4.37 2.50 45.15 0.11 4.49 16 16 H 0.05 1.76 7.56 -2.39 -0.02 1.74 16 17 C -0.12 -3.17 5.61 30.75 0.17 -3.00 16 18 C 0.07 1.57 5.85 86.77 0.51 2.08 16 19 N -0.54 -10.11 4.65 -865.98 -4.03 -14.13 16 20 C 0.04 0.66 6.86 87.03 0.60 1.25 16 21 C -0.12 -1.36 6.98 32.01 0.22 -1.14 16 22 C -0.11 -1.30 6.61 31.71 0.21 -1.09 16 23 C 0.06 1.10 2.63 44.67 0.12 1.22 16 24 H 0.05 0.91 8.05 -2.39 -0.02 0.90 16 25 C -0.10 -1.76 5.14 30.60 0.16 -1.61 16 26 C 0.41 21.89 2.81 71.98 0.20 22.09 16 27 F -0.20 -10.18 16.94 44.97 0.76 -9.42 16 28 F -0.22 -11.75 15.67 44.97 0.70 -11.05 16 29 F -0.15 -8.72 12.91 44.97 0.58 -8.13 16 30 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.41 13.96 8.55 -92.70 -0.79 13.17 16 32 H 0.41 8.88 8.62 -92.71 -0.80 8.08 16 33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 0.64 8.04 -2.39 -0.02 0.62 16 37 H 0.04 0.54 8.04 -2.39 -0.02 0.52 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 42 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -67.64 357.95 -0.48 -68.12 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.55 Total: 26.96 kcal Atomic # 6 Polarization: 36.29 SS G_CDS: 4.50 Total: 40.79 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -8.44 Total: -118.26 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.06 Total: -31.62 kcal Atomic # 9 Polarization: -30.65 SS G_CDS: 2.05 Total: -28.60 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -67.64 -0.48 -68.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932927278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.177 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds