Wall clock time and date at job start Tue Mar 31 2020 18:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99477 * 2 1 4 4 H 1.48501 * 109.47587 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47060 * 120.00083 * 3 2 1 6 6 H 1.48503 * 109.46940 * 240.00058 * 3 2 1 7 7 C 1.37872 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00426 * 200.91395 * 7 2 1 9 9 C 1.50701 * 120.00114 * 20.91380 * 7 2 1 10 10 H 1.09004 * 109.46913 * 305.39282 * 9 7 2 11 11 N 1.46495 * 109.47364 * 185.38900 * 9 7 2 12 12 C 1.34776 * 119.99839 * 155.00013 * 11 9 7 13 13 O 1.21584 * 120.00591 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99902 * 180.02562 * 12 11 9 15 15 C 1.46503 * 120.00367 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.24291 * 34.45488 * 15 14 12 17 17 C 1.52826 * 109.24744 * 275.00234 * 15 14 12 18 18 C 1.53636 * 110.63761 * 293.57282 * 17 15 14 19 19 N 1.45523 * 107.86446 * 302.86806 * 18 17 15 20 20 C 1.46332 * 117.22826 * 185.56504 * 19 18 17 21 21 C 1.54811 * 105.96096 * 208.04900 * 20 19 18 22 22 C 1.55328 * 104.99078 * 3.64334 * 21 20 19 23 23 C 1.48663 * 109.72193 * 65.32037 * 19 18 17 24 24 H 1.09004 * 111.10872 * 52.55376 * 23 19 18 25 25 C 1.52370 * 107.34332 * 290.46756 * 23 19 18 26 26 C 1.53008 * 109.47035 * 65.38685 * 9 7 2 27 27 F 1.39899 * 109.46752 * 54.83689 * 26 9 7 28 28 F 1.39901 * 109.47031 * 174.83617 * 26 9 7 29 29 F 1.39897 * 109.47288 * 294.83871 * 26 9 7 30 30 H 0.96999 * 119.99190 * 175.53097 * 1 2 3 31 31 H 0.97000 * 120.00372 * 334.99675 * 11 9 7 32 32 H 0.97000 * 120.00309 * 359.97438 * 14 12 11 33 33 H 1.08994 * 109.24398 * 53.87793 * 17 15 14 34 34 H 1.09005 * 109.23906 * 173.32073 * 17 15 14 35 35 H 1.09000 * 109.78279 * 62.46156 * 18 17 15 36 36 H 1.08997 * 109.78029 * 183.27517 * 18 17 15 37 37 H 1.08993 * 110.15597 * 327.16759 * 20 19 18 38 38 H 1.08997 * 110.15602 * 88.86186 * 20 19 18 39 39 H 1.09002 * 110.33412 * 122.52175 * 21 20 19 40 40 H 1.08999 * 110.33511 * 244.76363 * 21 20 19 41 41 H 1.08998 * 110.90679 * 140.38852 * 22 21 20 42 42 H 1.08998 * 110.91338 * 263.99676 * 22 21 20 43 43 H 1.08992 * 109.83309 * 303.29022 * 25 23 19 44 44 H 1.09003 * 109.82746 * 182.33972 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1027 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0312 -1.2246 0.3344 9 6 1.3257 -2.4563 -0.4648 10 1 0.4045 -2.6026 0.0993 11 7 2.2172 -3.5985 -0.2486 12 6 1.7036 -4.8357 -0.1003 13 8 0.5003 -5.0040 -0.1464 14 7 2.5237 -5.8864 0.0990 15 6 1.9655 -7.2312 0.2608 16 1 1.0789 -7.3299 -0.3657 17 6 1.5749 -7.4420 1.7232 18 6 2.8221 -7.4549 2.6203 19 7 3.7097 -8.5014 2.1358 20 6 4.9119 -8.7772 2.9231 21 6 5.9613 -9.3188 1.9220 22 6 5.2751 -9.2268 0.5316 23 6 4.1969 -8.1555 0.7745 24 1 4.6288 -7.1549 0.7546 25 6 3.0107 -8.2694 -0.1750 26 6 0.9981 -2.3398 -1.9548 27 9 2.1637 -2.0351 -2.6660 28 9 0.4757 -3.5537 -2.4138 29 9 0.0556 -1.3240 -2.1471 30 1 -0.4849 -0.8376 -0.0655 31 1 3.1772 -3.4644 -0.2123 32 1 3.4837 -5.7523 0.1354 33 1 0.9139 -6.6347 2.0384 34 1 1.0523 -8.3935 1.8218 35 1 3.3256 -6.4897 2.5660 36 1 2.5334 -7.6636 3.6504 37 1 5.2748 -7.8607 3.3881 38 1 4.6979 -9.5258 3.6859 39 1 6.8591 -8.7010 1.9431 40 1 6.2078 -10.3547 2.1551 41 1 5.9828 -8.9006 -0.2306 42 1 4.8221 -10.1796 0.2575 43 1 2.5844 -9.2708 -0.1158 44 1 3.3331 -8.0637 -1.1957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932927380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:06 Heat of formation + Delta-G solvation = -181.982921 kcal Electronic energy + Delta-G solvation = -31000.845842 eV Core-core repulsion = 26344.643996 eV Total energy + Delta-G solvation = -4656.201846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.74461 -46.27698 -46.21798 -40.55687 -39.08462 -36.01375 -34.68291 -33.11533 -32.62969 -31.46476 -29.26481 -28.01294 -26.97579 -24.45074 -23.26455 -22.28360 -21.57102 -21.14703 -20.64137 -19.26284 -18.43398 -17.44813 -17.09292 -16.93205 -16.55262 -16.01636 -15.97298 -15.41406 -14.95652 -14.66609 -14.20688 -13.91522 -13.87838 -13.58621 -13.26589 -13.20164 -13.06489 -12.90475 -12.71560 -12.66640 -12.56463 -12.54733 -12.42312 -12.28514 -11.94451 -11.56685 -11.37169 -11.35887 -11.24655 -11.03900 -10.86973 -10.81622 -10.64639 -10.42410 -10.21478 -9.64305 -9.47802 -8.85936 -8.49351 -8.44323 -8.30486 -6.74807 -4.50777 3.11094 3.30446 3.36912 3.54066 3.68082 3.74577 4.21900 4.27882 4.30922 4.39778 4.66074 4.69536 4.81156 4.91280 4.92580 4.94711 5.07328 5.14005 5.35359 5.36132 5.42662 5.49090 5.55827 5.58992 5.61175 5.61654 5.73087 5.74473 5.82309 5.85792 5.90273 6.05178 6.07209 6.20799 6.60198 6.77396 6.81353 7.06136 7.07143 7.21123 7.56029 8.08792 8.42967 8.56280 9.10641 9.22277 10.62167 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.003228 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.036123 B = 8670.961193 C = 9181.880370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.039 3.961 3 Si 1.072 2.928 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.638 4.638 8 H 0.072 0.928 9 C 0.253 3.747 10 H 0.079 0.921 11 N -0.722 5.722 12 C 0.699 3.301 13 O -0.585 6.585 14 N -0.748 5.748 15 C 0.165 3.835 16 H 0.089 0.911 17 C -0.124 4.124 18 C 0.063 3.937 19 N -0.536 5.536 20 C 0.049 3.951 21 C -0.128 4.128 22 C -0.115 4.115 23 C 0.064 3.936 24 H 0.053 0.947 25 C -0.110 4.110 26 C 0.413 3.587 27 F -0.196 7.196 28 F -0.205 7.205 29 F -0.179 7.179 30 H 0.279 0.721 31 H 0.395 0.605 32 H 0.388 0.612 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.983 -16.491 2.811 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.173 4.173 3 Si 0.898 3.102 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.674 4.674 8 H 0.090 0.910 9 C 0.145 3.855 10 H 0.096 0.904 11 N -0.374 5.374 12 C 0.399 3.601 13 O -0.463 6.463 14 N -0.405 5.405 15 C 0.059 3.941 16 H 0.107 0.893 17 C -0.163 4.163 18 C -0.065 4.065 19 N -0.261 5.261 20 C -0.079 4.079 21 C -0.166 4.166 22 C -0.154 4.154 23 C -0.044 4.044 24 H 0.071 0.929 25 C -0.149 4.149 26 C 0.357 3.643 27 F -0.178 7.178 28 F -0.187 7.187 29 F -0.160 7.160 30 H 0.091 0.909 31 H 0.228 0.772 32 H 0.222 0.778 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.275 -15.425 2.846 18.222 hybrid contribution 1.536 -0.751 -0.239 1.726 sum 10.811 -16.176 2.607 19.630 Atomic orbital electron populations 1.70748 1.07130 1.32457 1.38298 1.25987 0.95991 1.02986 0.92359 0.83499 0.75144 0.74568 0.76971 1.20356 1.21085 1.20735 1.21655 1.01756 0.91437 1.52540 0.91004 1.19583 0.94327 0.86035 0.85524 0.90383 1.45092 1.10333 1.05323 1.76660 1.16091 0.85576 0.80695 0.77690 1.90903 1.12901 1.84322 1.58143 1.45295 1.08949 1.06585 1.79656 1.20802 0.96898 0.80162 0.96237 0.89250 1.21998 0.96936 1.02760 0.94622 1.21910 0.93740 0.92050 0.98783 1.62783 1.17133 1.43456 1.02757 1.22492 0.89499 0.99681 0.96238 1.22628 0.97648 1.01566 0.94792 1.22376 0.96999 0.99362 0.96614 1.22579 0.94557 0.97279 0.89994 0.92905 1.21819 0.94865 0.99842 0.98348 1.23132 0.73635 0.72389 0.95120 1.93019 1.49912 1.93216 1.81621 1.93094 1.87438 1.46642 1.91517 1.93139 1.65899 1.60851 1.96137 0.90899 0.77162 0.77787 0.90623 0.90586 0.94690 0.90966 0.94464 0.90592 0.91567 0.91049 0.91096 0.90465 0.89355 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.42 12.45 55.43 0.69 -23.73 16 2 C 0.04 1.05 4.71 -17.82 -0.08 0.96 16 3 Si 1.07 23.56 29.95 -169.99 -5.09 18.47 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.64 -16.42 8.21 -34.44 -0.28 -16.70 16 8 H 0.07 1.77 7.80 -52.49 -0.41 1.36 16 9 C 0.25 6.24 1.92 -69.08 -0.13 6.11 16 10 H 0.08 2.16 6.61 -51.93 -0.34 1.81 16 11 N -0.72 -14.72 5.03 -59.81 -0.30 -15.02 16 12 C 0.70 13.74 7.94 -86.92 -0.69 13.05 16 13 O -0.59 -13.78 14.60 5.29 0.08 -13.70 16 14 N -0.75 -10.77 4.63 -58.44 -0.27 -11.04 16 15 C 0.16 2.10 2.75 -67.69 -0.19 1.92 16 16 H 0.09 1.33 7.55 -51.93 -0.39 0.94 16 17 C -0.12 -1.54 5.67 -26.49 -0.15 -1.69 16 18 C 0.06 0.70 5.71 -4.24 -0.02 0.68 16 19 N -0.54 -5.31 4.65 -225.06 -1.05 -6.36 16 20 C 0.05 0.42 6.86 -3.18 -0.02 0.39 16 21 C -0.13 -0.91 6.99 -24.54 -0.17 -1.08 16 22 C -0.12 -0.87 6.61 -25.01 -0.17 -1.03 16 23 C 0.06 0.59 2.46 -66.58 -0.16 0.42 16 24 H 0.05 0.51 6.55 -51.93 -0.34 0.17 16 25 C -0.11 -1.07 5.33 -26.72 -0.14 -1.22 16 26 C 0.41 10.39 2.82 37.16 0.10 10.50 16 27 F -0.20 -4.75 16.87 2.25 0.04 -4.72 16 28 F -0.21 -5.10 15.54 2.25 0.04 -5.06 16 29 F -0.18 -4.80 14.13 2.25 0.03 -4.77 16 30 H 0.28 8.11 6.04 -40.82 -0.25 7.87 16 31 H 0.39 6.99 8.54 -40.82 -0.35 6.64 16 32 H 0.39 4.69 7.02 -40.82 -0.29 4.41 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.43 7.86 -51.93 -0.41 0.02 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.33 8.04 -51.93 -0.42 -0.09 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -30.58 354.55 -8.82 -39.40 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.21 Total: 8.88 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -2.11 Total: 12.31 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.93 Total: -56.15 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 9 Polarization: -14.65 SS G_CDS: 0.10 Total: -14.55 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.09 Total: 18.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.58 -8.82 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932927380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.587 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds