Wall clock time and date at job start Tue Mar 31 2020 18:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99477 * 2 1 4 4 H 1.48501 * 109.47587 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47060 * 120.00083 * 3 2 1 6 6 H 1.48503 * 109.46940 * 240.00058 * 3 2 1 7 7 C 1.37872 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00426 * 200.91395 * 7 2 1 9 9 C 1.50701 * 120.00114 * 20.91380 * 7 2 1 10 10 H 1.09004 * 109.46913 * 305.39282 * 9 7 2 11 11 N 1.46495 * 109.47364 * 185.38900 * 9 7 2 12 12 C 1.34776 * 119.99839 * 155.00013 * 11 9 7 13 13 O 1.21584 * 120.00591 * 0.02562 * 12 11 9 14 14 N 1.34776 * 119.99902 * 180.02562 * 12 11 9 15 15 C 1.46503 * 120.00367 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.24291 * 34.45488 * 15 14 12 17 17 C 1.52826 * 109.24744 * 275.00234 * 15 14 12 18 18 C 1.53636 * 110.63761 * 293.57282 * 17 15 14 19 19 N 1.45523 * 107.86446 * 302.86806 * 18 17 15 20 20 C 1.46332 * 117.22826 * 185.56504 * 19 18 17 21 21 C 1.54811 * 105.96096 * 208.04900 * 20 19 18 22 22 C 1.55328 * 104.99078 * 3.64334 * 21 20 19 23 23 C 1.48663 * 109.72193 * 65.32037 * 19 18 17 24 24 H 1.09004 * 111.10872 * 52.55376 * 23 19 18 25 25 C 1.52370 * 107.34332 * 290.46756 * 23 19 18 26 26 C 1.53008 * 109.47035 * 65.38685 * 9 7 2 27 27 F 1.39899 * 109.46752 * 54.83689 * 26 9 7 28 28 F 1.39901 * 109.47031 * 174.83617 * 26 9 7 29 29 F 1.39897 * 109.47288 * 294.83871 * 26 9 7 30 30 H 0.96999 * 119.99190 * 175.53097 * 1 2 3 31 31 H 0.97000 * 120.00372 * 334.99675 * 11 9 7 32 32 H 0.97000 * 120.00309 * 359.97438 * 14 12 11 33 33 H 1.08994 * 109.24398 * 53.87793 * 17 15 14 34 34 H 1.09005 * 109.23906 * 173.32073 * 17 15 14 35 35 H 1.09000 * 109.78279 * 62.46156 * 18 17 15 36 36 H 1.08997 * 109.78029 * 183.27517 * 18 17 15 37 37 H 1.08993 * 110.15597 * 327.16759 * 20 19 18 38 38 H 1.08997 * 110.15602 * 88.86186 * 20 19 18 39 39 H 1.09002 * 110.33412 * 122.52175 * 21 20 19 40 40 H 1.08999 * 110.33511 * 244.76363 * 21 20 19 41 41 H 1.08998 * 110.90679 * 140.38852 * 22 21 20 42 42 H 1.08998 * 110.91338 * 263.99676 * 22 21 20 43 43 H 1.08992 * 109.83309 * 303.29022 * 25 23 19 44 44 H 1.09003 * 109.82746 * 182.33972 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1027 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0312 -1.2246 0.3344 9 6 1.3257 -2.4563 -0.4648 10 1 0.4045 -2.6026 0.0993 11 7 2.2172 -3.5985 -0.2486 12 6 1.7036 -4.8357 -0.1003 13 8 0.5003 -5.0040 -0.1464 14 7 2.5237 -5.8864 0.0990 15 6 1.9655 -7.2312 0.2608 16 1 1.0789 -7.3299 -0.3657 17 6 1.5749 -7.4420 1.7232 18 6 2.8221 -7.4549 2.6203 19 7 3.7097 -8.5014 2.1358 20 6 4.9119 -8.7772 2.9231 21 6 5.9613 -9.3188 1.9220 22 6 5.2751 -9.2268 0.5316 23 6 4.1969 -8.1555 0.7745 24 1 4.6288 -7.1549 0.7546 25 6 3.0107 -8.2694 -0.1750 26 6 0.9981 -2.3398 -1.9548 27 9 2.1637 -2.0351 -2.6660 28 9 0.4757 -3.5537 -2.4138 29 9 0.0556 -1.3240 -2.1471 30 1 -0.4849 -0.8376 -0.0655 31 1 3.1772 -3.4644 -0.2123 32 1 3.4837 -5.7523 0.1354 33 1 0.9139 -6.6347 2.0384 34 1 1.0523 -8.3935 1.8218 35 1 3.3256 -6.4897 2.5660 36 1 2.5334 -7.6636 3.6504 37 1 5.2748 -7.8607 3.3881 38 1 4.6979 -9.5258 3.6859 39 1 6.8591 -8.7010 1.9431 40 1 6.2078 -10.3547 2.1551 41 1 5.9828 -8.9006 -0.2306 42 1 4.8221 -10.1796 0.2575 43 1 2.5844 -9.2708 -0.1158 44 1 3.3331 -8.0637 -1.1957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932927380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:05 Heat of formation + Delta-G solvation = -202.863185 kcal Electronic energy + Delta-G solvation = -31001.751278 eV Core-core repulsion = 26344.643996 eV Total energy + Delta-G solvation = -4657.107282 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.79728 -48.32669 -48.27669 -41.64436 -40.39425 -37.28539 -36.37976 -34.68890 -33.88590 -32.57691 -30.27811 -29.55943 -27.90897 -26.51151 -24.22923 -23.94613 -22.62173 -22.20591 -21.73926 -20.51811 -19.98145 -19.37356 -19.05020 -18.90544 -18.31179 -17.03362 -16.80650 -16.65614 -16.17854 -15.95787 -15.66591 -15.43130 -15.31641 -15.18039 -14.92055 -14.85162 -14.76103 -14.58751 -14.48566 -14.33209 -14.23357 -13.99615 -13.47546 -13.37096 -13.28716 -13.00521 -12.76938 -12.55071 -12.35027 -12.14863 -12.01853 -11.92284 -11.59569 -11.43516 -11.41405 -11.33508 -11.32401 -10.48043 -10.38557 -9.89300 -9.27652 -8.85329 -6.62028 1.54277 1.62447 1.63781 1.83929 1.99440 2.28947 2.49291 2.91447 2.96357 3.17357 3.44255 3.54553 3.60002 3.63098 3.77605 3.95749 4.01122 4.08589 4.15394 4.28607 4.32244 4.42123 4.56777 4.65549 4.69680 4.77555 4.84888 4.93947 4.97881 5.02397 5.07165 5.11996 5.14969 5.30219 5.32459 5.32970 5.36673 5.58567 5.95600 6.02052 6.07077 6.27080 6.30013 7.04973 7.18280 7.56968 8.50211 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018106 B = 0.003228 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.036123 B = 8670.961193 C = 9181.880370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.006 4.006 3 Si 1.116 2.884 4 H -0.285 1.285 5 H -0.260 1.260 6 H -0.268 1.268 7 C -0.640 4.640 8 H 0.085 0.915 9 C 0.259 3.741 10 H 0.042 0.958 11 N -0.716 5.716 12 C 0.697 3.303 13 O -0.627 6.627 14 N -0.724 5.724 15 C 0.161 3.839 16 H 0.066 0.934 17 C -0.118 4.118 18 C 0.071 3.929 19 N -0.539 5.539 20 C 0.045 3.955 21 C -0.124 4.124 22 C -0.111 4.111 23 C 0.061 3.939 24 H 0.050 0.950 25 C -0.099 4.099 26 C 0.414 3.586 27 F -0.188 7.188 28 F -0.204 7.204 29 F -0.191 7.191 30 H 0.262 0.738 31 H 0.410 0.590 32 H 0.404 0.596 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.900 -17.535 2.858 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.212 4.212 3 Si 0.936 3.064 4 H -0.211 1.211 5 H -0.184 1.184 6 H -0.193 1.193 7 C -0.676 4.676 8 H 0.103 0.897 9 C 0.150 3.850 10 H 0.060 0.940 11 N -0.370 5.370 12 C 0.397 3.603 13 O -0.508 6.508 14 N -0.381 5.381 15 C 0.056 3.944 16 H 0.084 0.916 17 C -0.158 4.158 18 C -0.058 4.058 19 N -0.265 5.265 20 C -0.083 4.083 21 C -0.162 4.162 22 C -0.149 4.149 23 C -0.047 4.047 24 H 0.068 0.932 25 C -0.137 4.137 26 C 0.358 3.642 27 F -0.170 7.170 28 F -0.186 7.186 29 F -0.172 7.172 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.240 0.760 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.268 -16.532 2.908 20.791 hybrid contribution 0.617 -0.539 -0.241 0.854 sum 12.885 -17.071 2.667 21.553 Atomic orbital electron populations 1.70872 1.08283 1.31442 1.40962 1.27425 0.95940 1.06603 0.91275 0.82961 0.74363 0.70603 0.78482 1.21082 1.18430 1.19316 1.21942 1.02204 0.91615 1.51842 0.89660 1.19180 0.93619 0.87371 0.84819 0.93985 1.44848 1.10554 1.04724 1.76901 1.16259 0.85410 0.81214 0.77443 1.90878 1.15046 1.84928 1.59936 1.45137 1.09240 1.05937 1.77825 1.20975 0.97297 0.79897 0.96194 0.91602 1.21899 0.97278 1.02033 0.94550 1.21767 0.93293 0.92035 0.98683 1.62788 1.17805 1.42546 1.03348 1.22583 0.89276 0.99740 0.96676 1.22627 0.97271 1.02355 0.93928 1.22374 0.96525 0.98755 0.97215 1.22638 0.94746 0.97929 0.89365 0.93232 1.21762 0.94050 0.98931 0.98937 1.23102 0.73592 0.72119 0.95377 1.93024 1.49325 1.93162 1.81451 1.93093 1.87483 1.46517 1.91510 1.93116 1.66469 1.61422 1.96217 0.92675 0.75420 0.75980 0.93825 0.89494 0.95872 0.90540 0.94873 0.90110 0.90848 0.89890 0.89831 0.90076 0.88265 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.45 12.45 21.45 0.27 -51.18 16 2 C -0.01 -0.33 4.71 84.65 0.40 0.07 16 3 Si 1.12 46.30 29.95 68.60 2.05 48.35 16 4 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.64 -32.70 8.21 25.60 0.21 -32.49 16 8 H 0.09 4.06 7.80 -2.91 -0.02 4.03 16 9 C 0.26 12.99 1.92 44.25 0.09 13.07 16 10 H 0.04 2.44 6.61 -2.38 -0.02 2.43 16 11 N -0.72 -29.14 5.03 -461.41 -2.32 -31.46 16 12 C 0.70 27.66 7.94 179.05 1.42 29.08 16 13 O -0.63 -30.58 14.60 -3.98 -0.06 -30.64 16 14 N -0.72 -20.47 4.63 -457.06 -2.12 -22.59 16 15 C 0.16 4.06 2.75 45.15 0.12 4.18 16 16 H 0.07 2.00 7.55 -2.39 -0.02 1.98 16 17 C -0.12 -2.94 5.67 30.75 0.17 -2.77 16 18 C 0.07 1.51 5.71 86.78 0.50 2.01 16 19 N -0.54 -9.62 4.65 -865.96 -4.02 -13.64 16 20 C 0.04 0.66 6.86 87.03 0.60 1.26 16 21 C -0.12 -1.37 6.99 32.01 0.22 -1.15 16 22 C -0.11 -1.30 6.61 31.71 0.21 -1.09 16 23 C 0.06 0.97 2.46 44.68 0.11 1.08 16 24 H 0.05 0.83 6.55 -2.39 -0.02 0.82 16 25 C -0.10 -1.72 5.33 30.60 0.16 -1.55 16 26 C 0.41 21.02 2.82 71.98 0.20 21.22 16 27 F -0.19 -8.96 16.87 44.97 0.76 -8.20 16 28 F -0.20 -10.28 15.54 44.97 0.70 -9.58 16 29 F -0.19 -10.45 14.13 44.97 0.64 -9.82 16 30 H 0.26 15.89 6.04 -92.71 -0.56 15.33 16 31 H 0.41 14.00 8.54 -92.71 -0.79 13.20 16 32 H 0.40 9.11 7.02 -92.71 -0.65 8.46 16 33 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.02 0.55 7.86 -2.39 -0.02 0.53 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.03 0.52 8.04 -2.39 -0.02 0.50 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 43 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.90 354.55 0.13 -66.78 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.19 Total: 29.06 kcal Atomic # 6 Polarization: 28.51 SS G_CDS: 4.42 Total: 32.92 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -8.19 Total: -118.87 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.06 Total: -30.64 kcal Atomic # 9 Polarization: -29.69 SS G_CDS: 2.09 Total: -27.60 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.05 Total: 48.35 kcal Total: -66.90 0.13 -66.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932927380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.088 kcal (2) G-P(sol) polarization free energy of solvation -66.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds