Wall clock time and date at job start Tue Mar 31 2020 18:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47360 * 274.92001 * 3 2 1 5 5 H 1.48502 * 109.47114 * 34.92239 * 3 2 1 6 6 H 1.48498 * 109.47119 * 154.91772 * 3 2 1 7 7 C 1.37876 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 4.89978 * 7 2 1 9 9 C 1.50694 * 120.00171 * 184.90040 * 7 2 1 10 10 H 1.09003 * 109.47700 * 54.85061 * 9 7 2 11 11 N 1.46503 * 109.47253 * 294.85308 * 9 7 2 12 12 C 1.34772 * 120.00105 * 154.99697 * 11 9 7 13 13 O 1.21583 * 120.00201 * 4.87222 * 12 11 9 14 14 N 1.34780 * 120.00077 * 184.86940 * 12 11 9 15 15 C 1.47083 * 120.87745 * 354.72129 * 14 12 11 16 16 C 1.53240 * 108.51667 * 231.15790 * 15 14 12 17 17 N 1.46893 * 109.34393 * 306.16968 * 16 15 14 18 18 C 1.46903 * 111.00194 * 187.25395 * 17 16 15 19 19 C 1.53007 * 109.47179 * 170.00196 * 18 17 16 20 20 C 1.52995 * 117.49895 * 174.99996 * 19 18 17 21 21 C 1.52999 * 117.49789 * 243.62312 * 19 18 17 22 22 C 1.46898 * 111.26805 * 63.10732 * 17 16 15 23 23 C 1.47081 * 120.88361 * 174.69272 * 14 12 11 24 24 C 1.52998 * 109.47394 * 174.85232 * 9 7 2 25 25 F 1.39906 * 109.47444 * 185.01675 * 24 9 7 26 26 F 1.39895 * 109.47260 * 305.01672 * 24 9 7 27 27 F 1.39905 * 109.47357 * 65.02005 * 24 9 7 28 28 H 0.96997 * 119.99848 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99850 * 334.99889 * 11 9 7 30 30 H 1.08996 * 109.62919 * 111.45262 * 15 14 12 31 31 H 1.08993 * 109.78899 * 350.96318 * 15 14 12 32 32 H 1.09004 * 109.49050 * 186.21264 * 16 15 14 33 33 H 1.08995 * 109.49107 * 66.13301 * 16 15 14 34 34 H 1.08995 * 109.46949 * 50.00328 * 18 17 16 35 35 H 1.08995 * 109.47264 * 289.99818 * 18 17 16 36 36 H 1.09000 * 115.55830 * 29.30824 * 19 18 17 37 37 H 1.08999 * 117.49817 * 359.97438 * 20 19 18 38 38 H 1.08994 * 117.50076 * 214.98040 * 20 19 18 39 39 H 1.08998 * 117.49671 * 145.01739 * 21 19 18 40 40 H 1.09003 * 117.51498 * 359.97438 * 21 19 18 41 41 H 1.09003 * 109.49538 * 56.85350 * 22 17 16 42 42 H 1.09003 * 109.49738 * 176.93963 * 22 17 16 43 43 H 1.08996 * 109.62699 * 248.55128 * 23 14 12 44 44 H 1.08999 * 109.62656 * 9.13124 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3927 2.1064 -1.3948 5 1 1.5025 2.6204 0.8015 6 1 3.5948 1.4123 0.5935 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0808 9 6 3.5074 -1.1965 0.1109 10 1 3.8067 -0.6423 1.0005 11 7 4.0862 -0.5633 -1.0766 12 6 5.3075 0.0028 -1.0108 13 8 5.9661 -0.0890 0.0072 14 7 5.7990 0.6705 -2.0734 15 6 5.0711 0.6963 -3.3512 16 6 6.0366 0.2891 -4.4695 17 7 7.2300 1.1439 -4.4171 18 6 8.1020 0.9022 -5.5744 19 6 9.1959 1.9709 -5.6208 20 6 10.2800 1.8262 -6.6907 21 6 9.2121 2.9134 -6.8260 22 6 7.9633 0.9586 -3.1578 23 6 7.0769 1.3933 -1.9857 24 6 4.0087 -2.6382 0.2156 25 9 5.3906 -2.6369 0.4337 26 9 3.3689 -3.2782 1.2825 27 9 3.7251 -3.3182 -0.9738 28 1 -0.4850 0.8400 0.0004 29 1 3.5904 -0.5513 -1.9102 30 1 4.6967 1.7025 -3.5392 31 1 4.2368 -0.0040 -3.3148 32 1 5.5456 0.4088 -5.4353 33 1 6.3290 -0.7524 -4.3362 34 1 7.5116 0.9466 -6.4896 35 1 8.5600 -0.0828 -5.4848 36 1 9.4926 2.3824 -4.6561 37 1 10.2142 0.9693 -7.3612 38 1 11.2899 2.1424 -6.4298 39 1 9.5194 3.9449 -6.6540 40 1 8.4438 2.7721 -7.5861 41 1 8.2289 -0.0923 -3.0427 42 1 8.8698 1.5639 -3.1722 43 1 6.8952 2.4665 -2.0423 44 1 7.5703 1.1518 -1.0443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932928178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:48 Heat of formation + Delta-G solvation = -137.592594 kcal Electronic energy + Delta-G solvation = -30875.366198 eV Core-core repulsion = 26221.089261 eV Total energy + Delta-G solvation = -4654.276937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.03748 -46.54368 -46.52840 -40.13788 -38.64210 -37.02171 -34.94962 -34.13478 -32.52159 -31.19683 -29.39350 -27.97976 -24.98798 -24.92686 -23.83628 -22.65675 -21.82268 -21.01075 -20.38194 -19.25901 -18.46279 -17.56055 -17.50118 -16.83836 -16.43324 -16.28005 -15.76470 -15.33023 -15.17250 -14.98123 -14.54313 -14.33860 -14.05475 -13.78330 -13.50145 -13.42018 -13.36866 -12.99543 -12.99422 -12.75668 -12.72975 -12.64746 -12.48209 -12.21295 -11.93513 -11.80018 -11.66558 -11.43579 -11.19252 -11.12831 -11.04518 -10.62909 -10.56389 -10.25595 -10.13353 -9.84171 -9.60582 -9.01034 -8.72907 -8.47613 -8.13019 -6.50812 -4.64941 2.93388 3.11465 3.22184 3.33950 3.40225 3.60827 3.77608 3.94999 4.14034 4.24554 4.40441 4.62097 4.69840 4.85582 4.92120 4.97879 5.01399 5.09208 5.10863 5.20237 5.23726 5.27241 5.33700 5.37692 5.42861 5.44419 5.53347 5.60400 5.61888 5.81060 5.82200 5.85970 5.96129 6.05864 6.36844 6.69205 6.81267 6.86293 6.93235 7.15423 7.39230 7.90904 8.51914 8.52950 9.02981 9.11782 10.57152 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.003599 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.518746 B = 7777.670779 C = 8608.760159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.096 3.904 3 Si 0.880 3.120 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.095 0.905 9 C 0.223 3.777 10 H 0.090 0.910 11 N -0.733 5.733 12 C 0.697 3.303 13 O -0.585 6.585 14 N -0.638 5.638 15 C 0.115 3.885 16 C 0.044 3.956 17 N -0.535 5.535 18 C 0.087 3.913 19 C -0.146 4.146 20 C -0.184 4.184 21 C -0.174 4.174 22 C 0.040 3.960 23 C 0.135 3.865 24 C 0.440 3.560 25 F -0.191 7.191 26 F -0.185 7.185 27 F -0.193 7.193 28 H 0.274 0.726 29 H 0.394 0.606 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.575 4.138 -12.585 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.114 4.114 3 Si 0.707 3.293 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.575 4.575 8 H 0.113 0.887 9 C 0.119 3.881 10 H 0.108 0.892 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.463 6.463 14 N -0.377 5.377 15 C -0.009 4.009 16 C -0.085 4.085 17 N -0.259 5.259 18 C -0.041 4.041 19 C -0.165 4.165 20 C -0.221 4.221 21 C -0.211 4.211 22 C -0.088 4.088 23 C 0.011 3.989 24 C 0.385 3.615 25 F -0.173 7.173 26 F -0.167 7.167 27 F -0.174 7.174 28 H 0.084 0.916 29 H 0.233 0.767 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.697 4.615 -11.808 19.409 hybrid contribution 0.424 -0.181 -0.564 0.729 sum 15.121 4.435 -12.372 20.035 Atomic orbital electron populations 1.69881 1.06417 1.28242 1.45017 1.24930 0.94777 0.99378 0.92272 0.86773 0.81030 0.82486 0.79019 1.19874 1.21503 1.17775 1.20829 0.85967 0.96484 1.54191 0.88718 1.20175 0.95596 0.83929 0.88423 0.89220 1.47037 1.16546 1.59855 1.15649 1.16297 0.82228 0.78388 0.83187 1.90872 1.59464 1.65557 1.30412 1.47397 1.23736 1.55424 1.11127 1.21676 0.94114 1.02512 0.82602 1.22467 0.91659 0.94928 0.99439 1.61889 1.07291 1.54756 1.01996 1.21652 0.92953 0.95730 0.93761 1.22294 0.98557 1.00767 0.94864 1.22974 0.94942 1.01476 1.02729 1.22983 1.01719 0.95809 1.00555 1.22572 0.96857 1.00107 0.89282 1.21472 0.83239 0.95679 0.98486 1.21563 0.74582 0.92458 0.72944 1.93158 1.32367 1.97148 1.94602 1.93104 1.81976 1.84194 1.57377 1.93068 1.93423 1.82902 1.48028 0.91584 0.76730 0.90770 0.89612 0.89578 0.94132 0.90595 0.94475 0.87337 0.88941 0.88851 0.88952 0.88835 0.94265 0.89594 0.91454 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.73 13.96 55.43 0.77 -22.95 16 2 C 0.10 2.49 5.47 -17.82 -0.10 2.40 16 3 Si 0.88 20.33 26.03 -169.99 -4.42 15.91 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.25 -6.11 5.80 56.52 0.33 -5.78 16 7 C -0.54 -13.79 8.65 -34.44 -0.30 -14.08 16 8 H 0.09 2.65 7.95 -52.49 -0.42 2.23 16 9 C 0.22 5.20 1.36 -69.08 -0.09 5.11 16 10 H 0.09 2.24 6.56 -51.93 -0.34 1.90 16 11 N -0.73 -15.32 2.78 -59.81 -0.17 -15.48 16 12 C 0.70 14.34 7.13 -86.92 -0.62 13.72 16 13 O -0.59 -13.80 14.16 5.29 0.07 -13.73 16 14 N -0.64 -10.52 3.01 -178.19 -0.54 -11.06 16 15 C 0.12 1.55 6.53 -3.60 -0.02 1.53 16 16 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 17 N -0.53 -5.77 4.63 -234.32 -1.08 -6.85 16 18 C 0.09 0.78 5.24 -3.82 -0.02 0.76 16 19 C -0.15 -1.19 5.66 -90.62 -0.51 -1.71 16 20 C -0.18 -1.28 10.25 -26.73 -0.27 -1.55 16 21 C -0.17 -1.27 10.18 -26.73 -0.27 -1.55 16 22 C 0.04 0.46 5.47 -3.70 -0.02 0.44 16 23 C 0.14 1.89 6.61 -3.60 -0.02 1.87 16 24 C 0.44 9.93 2.79 37.16 0.10 10.04 16 25 F -0.19 -4.34 15.63 2.25 0.04 -4.31 16 26 F -0.18 -4.21 16.86 2.25 0.04 -4.17 16 27 F -0.19 -4.19 16.97 2.25 0.04 -4.16 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 7.58 6.12 -40.82 -0.25 7.33 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.15 5.75 -51.93 -0.30 0.85 16 32 H 0.09 0.79 7.99 -51.93 -0.41 0.37 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 35 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.11 0.93 6.33 -51.93 -0.33 0.60 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.82 6.12 -51.93 -0.32 0.50 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.10 1.47 7.04 -51.93 -0.37 1.11 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -29.84 358.03 -8.17 -38.01 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.14 Total: 5.96 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: -2.17 Total: 17.43 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -1.01 Total: -56.34 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.73 kcal Atomic # 9 Polarization: -12.74 SS G_CDS: 0.11 Total: -12.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.42 Total: 15.91 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.84 -8.17 -38.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932928178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.580 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds