Wall clock time and date at job start Tue Mar 31 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48493 * 109.47360 * 274.92001 * 3 2 1 5 5 H 1.48502 * 109.47114 * 34.92239 * 3 2 1 6 6 H 1.48498 * 109.47119 * 154.91772 * 3 2 1 7 7 C 1.37876 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 4.89978 * 7 2 1 9 9 C 1.50694 * 120.00171 * 184.90040 * 7 2 1 10 10 H 1.09003 * 109.47700 * 54.85061 * 9 7 2 11 11 N 1.46503 * 109.47253 * 294.85308 * 9 7 2 12 12 C 1.34772 * 120.00105 * 154.99697 * 11 9 7 13 13 O 1.21583 * 120.00201 * 4.87222 * 12 11 9 14 14 N 1.34780 * 120.00077 * 184.86940 * 12 11 9 15 15 C 1.47083 * 120.87745 * 354.72129 * 14 12 11 16 16 C 1.53240 * 108.51667 * 231.15790 * 15 14 12 17 17 N 1.46893 * 109.34393 * 306.16968 * 16 15 14 18 18 C 1.46903 * 111.00194 * 187.25395 * 17 16 15 19 19 C 1.53007 * 109.47179 * 170.00196 * 18 17 16 20 20 C 1.52995 * 117.49895 * 174.99996 * 19 18 17 21 21 C 1.52999 * 117.49789 * 243.62312 * 19 18 17 22 22 C 1.46898 * 111.26805 * 63.10732 * 17 16 15 23 23 C 1.47081 * 120.88361 * 174.69272 * 14 12 11 24 24 C 1.52998 * 109.47394 * 174.85232 * 9 7 2 25 25 F 1.39906 * 109.47444 * 185.01675 * 24 9 7 26 26 F 1.39895 * 109.47260 * 305.01672 * 24 9 7 27 27 F 1.39905 * 109.47357 * 65.02005 * 24 9 7 28 28 H 0.96997 * 119.99848 * 359.97438 * 1 2 3 29 29 H 0.96997 * 119.99850 * 334.99889 * 11 9 7 30 30 H 1.08996 * 109.62919 * 111.45262 * 15 14 12 31 31 H 1.08993 * 109.78899 * 350.96318 * 15 14 12 32 32 H 1.09004 * 109.49050 * 186.21264 * 16 15 14 33 33 H 1.08995 * 109.49107 * 66.13301 * 16 15 14 34 34 H 1.08995 * 109.46949 * 50.00328 * 18 17 16 35 35 H 1.08995 * 109.47264 * 289.99818 * 18 17 16 36 36 H 1.09000 * 115.55830 * 29.30824 * 19 18 17 37 37 H 1.08999 * 117.49817 * 359.97438 * 20 19 18 38 38 H 1.08994 * 117.50076 * 214.98040 * 20 19 18 39 39 H 1.08998 * 117.49671 * 145.01739 * 21 19 18 40 40 H 1.09003 * 117.51498 * 359.97438 * 21 19 18 41 41 H 1.09003 * 109.49538 * 56.85350 * 22 17 16 42 42 H 1.09003 * 109.49738 * 176.93963 * 22 17 16 43 43 H 1.08996 * 109.62699 * 248.55128 * 23 14 12 44 44 H 1.08999 * 109.62656 * 9.13124 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3927 2.1064 -1.3948 5 1 1.5025 2.6204 0.8015 6 1 3.5948 1.4123 0.5935 7 6 2.0045 -1.1940 -0.0005 8 1 1.4675 -2.1276 -0.0808 9 6 3.5074 -1.1965 0.1109 10 1 3.8067 -0.6423 1.0005 11 7 4.0862 -0.5633 -1.0766 12 6 5.3075 0.0028 -1.0108 13 8 5.9661 -0.0890 0.0072 14 7 5.7990 0.6705 -2.0734 15 6 5.0711 0.6963 -3.3512 16 6 6.0366 0.2891 -4.4695 17 7 7.2300 1.1439 -4.4171 18 6 8.1020 0.9022 -5.5744 19 6 9.1959 1.9709 -5.6208 20 6 10.2800 1.8262 -6.6907 21 6 9.2121 2.9134 -6.8260 22 6 7.9633 0.9586 -3.1578 23 6 7.0769 1.3933 -1.9857 24 6 4.0087 -2.6382 0.2156 25 9 5.3906 -2.6369 0.4337 26 9 3.3689 -3.2782 1.2825 27 9 3.7251 -3.3182 -0.9738 28 1 -0.4850 0.8400 0.0004 29 1 3.5904 -0.5513 -1.9102 30 1 4.6967 1.7025 -3.5392 31 1 4.2368 -0.0040 -3.3148 32 1 5.5456 0.4088 -5.4353 33 1 6.3290 -0.7524 -4.3362 34 1 7.5116 0.9466 -6.4896 35 1 8.5600 -0.0828 -5.4848 36 1 9.4926 2.3824 -4.6561 37 1 10.2142 0.9693 -7.3612 38 1 11.2899 2.1424 -6.4298 39 1 9.5194 3.9449 -6.6540 40 1 8.4438 2.7721 -7.5861 41 1 8.2289 -0.0923 -3.0427 42 1 8.8698 1.5639 -3.1722 43 1 6.8952 2.4665 -2.0423 44 1 7.5703 1.1518 -1.0443 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932928178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:47 Heat of formation + Delta-G solvation = -156.198150 kcal Electronic energy + Delta-G solvation = -30876.172996 eV Core-core repulsion = 26221.089261 eV Total energy + Delta-G solvation = -4655.083734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.88403 -48.38503 -48.37315 -41.51338 -39.67581 -37.89427 -36.72754 -35.32264 -34.41684 -32.32338 -30.93651 -29.14856 -26.94981 -25.88020 -24.89503 -23.38208 -23.16982 -22.39916 -21.13426 -20.76192 -20.06667 -19.33124 -19.12844 -18.62526 -18.35276 -17.35634 -17.00785 -16.39368 -16.37396 -16.17054 -15.89014 -15.49554 -15.30618 -15.24034 -15.11914 -14.86909 -14.83961 -14.71389 -14.62622 -14.57179 -14.50588 -14.38906 -13.63913 -13.42265 -13.15878 -12.93691 -12.75708 -12.53318 -12.40651 -12.31784 -12.21693 -12.03195 -11.87571 -11.85260 -11.30161 -11.14601 -10.98627 -10.83500 -10.29130 -9.71272 -9.26398 -8.53615 -6.72278 1.24018 1.34431 1.47015 1.52897 1.89479 2.14672 2.26707 2.63664 2.72326 3.04178 3.09001 3.21711 3.37027 3.57956 3.74211 3.83196 3.96894 4.06915 4.13635 4.16382 4.21141 4.31624 4.42498 4.46442 4.55722 4.69742 4.72827 4.74569 4.80622 4.82933 4.85058 4.95551 5.02690 5.09327 5.31055 5.34924 5.39516 5.48393 5.78459 5.93362 5.98340 6.10039 6.42172 6.94204 6.99276 7.51088 8.58398 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.003599 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.518746 B = 7777.670779 C = 8608.760159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.062 3.938 3 Si 0.937 3.063 4 H -0.250 1.250 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.233 3.767 10 H 0.074 0.926 11 N -0.730 5.730 12 C 0.693 3.307 13 O -0.619 6.619 14 N -0.634 5.634 15 C 0.108 3.892 16 C 0.050 3.950 17 N -0.537 5.537 18 C 0.090 3.910 19 C -0.157 4.157 20 C -0.178 4.178 21 C -0.173 4.173 22 C 0.051 3.949 23 C 0.131 3.869 24 C 0.443 3.557 25 F -0.190 7.190 26 F -0.187 7.187 27 F -0.187 7.187 28 H 0.280 0.720 29 H 0.404 0.596 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.026 0.974 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.970 5.462 -14.699 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.762 3.238 4 H -0.174 1.174 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.128 3.872 10 H 0.092 0.908 11 N -0.389 5.389 12 C 0.396 3.604 13 O -0.500 6.500 14 N -0.372 5.372 15 C -0.015 4.015 16 C -0.079 4.079 17 N -0.261 5.261 18 C -0.037 4.037 19 C -0.175 4.175 20 C -0.215 4.215 21 C -0.210 4.210 22 C -0.078 4.078 23 C 0.008 3.992 24 C 0.388 3.612 25 F -0.172 7.172 26 F -0.169 7.169 27 F -0.168 7.168 28 H 0.089 0.911 29 H 0.244 0.756 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.052 0.948 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.044 0.956 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.103 5.954 -13.992 22.148 hybrid contribution 0.040 -0.626 0.065 0.631 sum 16.143 5.328 -13.927 21.976 Atomic orbital electron populations 1.69951 1.07713 1.29326 1.46545 1.25477 0.95194 1.01899 0.91807 0.85896 0.78753 0.79152 0.80004 1.17365 1.21687 1.19414 1.20736 0.87061 0.95479 1.54498 0.91641 1.19766 0.94297 0.84417 0.88751 0.90808 1.46549 1.17103 1.60084 1.15180 1.16343 0.81751 0.78602 0.83753 1.90847 1.60207 1.66837 1.32116 1.47495 1.24467 1.54176 1.11020 1.21931 0.94602 1.03187 0.81783 1.22431 0.91534 0.94347 0.99573 1.61911 1.07479 1.54537 1.02206 1.21671 0.92983 0.95879 0.93186 1.22254 0.99042 1.01110 0.95117 1.23036 0.95024 1.01495 1.01957 1.23042 1.01939 0.96008 1.00028 1.22455 0.97000 0.99587 0.88720 1.21646 0.82419 0.96064 0.99022 1.21420 0.74550 0.92191 0.73087 1.93160 1.32255 1.97134 1.94619 1.93098 1.82038 1.84196 1.57530 1.93076 1.93389 1.82721 1.47639 0.91061 0.75611 0.89754 0.89721 0.86990 0.95047 0.89575 0.94763 0.87756 0.88426 0.88234 0.88642 0.88464 0.95619 0.87470 0.90189 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.82 13.96 21.45 0.30 -49.52 16 2 C 0.06 3.25 5.47 84.65 0.46 3.71 16 3 Si 0.94 41.68 26.03 68.60 1.79 43.47 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.66 5.80 99.48 0.58 -12.08 16 7 C -0.54 -28.05 8.65 25.60 0.22 -27.83 16 8 H 0.07 3.75 7.95 -2.91 -0.02 3.73 16 9 C 0.23 10.93 1.36 44.24 0.06 10.99 16 10 H 0.07 3.73 6.56 -2.39 -0.02 3.72 16 11 N -0.73 -30.04 2.78 -461.42 -1.28 -31.32 16 12 C 0.69 28.01 7.13 179.05 1.28 29.28 16 13 O -0.62 -29.17 14.16 -3.98 -0.06 -29.23 16 14 N -0.63 -19.92 3.01 -835.94 -2.52 -22.44 16 15 C 0.11 2.65 6.53 86.35 0.56 3.21 16 16 C 0.05 0.97 5.62 86.39 0.49 1.45 16 17 N -0.54 -10.08 4.63 -895.25 -4.14 -14.23 16 18 C 0.09 1.36 5.24 86.31 0.45 1.81 16 19 C -0.16 -2.14 5.66 -10.79 -0.06 -2.20 16 20 C -0.18 -2.01 10.25 30.59 0.31 -1.69 16 21 C -0.17 -2.07 10.18 30.59 0.31 -1.76 16 22 C 0.05 1.06 5.47 86.39 0.47 1.53 16 23 C 0.13 3.47 6.61 86.35 0.57 4.04 16 24 C 0.44 20.04 2.79 71.98 0.20 20.24 16 25 F -0.19 -8.61 15.63 44.97 0.70 -7.91 16 26 F -0.19 -8.57 16.86 44.97 0.76 -7.81 16 27 F -0.19 -8.07 16.97 44.97 0.76 -7.31 16 28 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.40 15.08 6.12 -92.71 -0.57 14.51 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 2.09 5.75 -2.39 -0.01 2.07 16 32 H 0.11 1.64 7.99 -2.38 -0.02 1.62 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.14 7.70 -2.39 -0.02 1.12 16 35 H 0.03 0.55 8.12 -2.39 -0.02 0.53 16 36 H 0.10 1.51 6.33 -2.39 -0.02 1.50 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.09 8.03 -2.39 -0.02 1.07 16 41 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.11 1.78 6.12 -2.39 -0.01 1.77 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.40 7.04 -2.39 -0.02 2.38 16 Total: -1.00 -63.47 358.03 1.98 -61.48 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.34 Total: 22.02 kcal Atomic # 6 Polarization: 37.46 SS G_CDS: 5.33 Total: 42.79 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -7.64 Total: -117.50 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.23 kcal Atomic # 9 Polarization: -25.25 SS G_CDS: 2.22 Total: -23.03 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.79 Total: 43.47 kcal Total: -63.47 1.98 -61.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932928178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.715 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds