Wall clock time and date at job start Tue Mar 31 2020 18:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99652 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99840 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21693 * 120.00200 * 359.72115 * 14 13 12 16 16 C 1.46658 * 119.99639 * 179.72443 * 14 13 12 17 17 C 1.36549 * 125.98694 * 179.71618 * 16 14 13 18 18 C 1.40364 * 106.70848 * 179.85276 * 17 16 14 19 19 C 1.35134 * 107.11069 * 0.40397 * 18 17 16 20 20 C 1.50701 * 125.61278 * 179.77849 * 19 18 17 21 21 N 1.46902 * 109.47010 * 89.98862 * 20 19 18 22 22 C 1.46849 * 110.99832 * 294.20998 * 21 20 19 23 23 C 1.53037 * 109.52277 * 174.15950 * 22 21 20 24 24 C 1.53118 * 109.28178 * 59.18261 * 23 22 21 25 25 C 1.53124 * 109.15388 * 302.34365 * 24 23 22 26 26 C 1.46845 * 111.00170 * 170.00193 * 21 20 19 27 27 O 1.33929 * 108.77005 * 359.75286 * 19 18 17 28 28 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 31 31 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 33 33 H 1.08000 * 126.64269 * 359.95722 * 17 16 14 34 34 H 1.07993 * 126.44371 * 180.15294 * 18 17 16 35 35 H 1.09001 * 109.47693 * 209.98725 * 20 19 18 36 36 H 1.08997 * 109.47330 * 329.99047 * 20 19 18 37 37 H 1.08997 * 109.46512 * 294.17819 * 22 21 20 38 38 H 1.09001 * 109.46554 * 54.14084 * 22 21 20 39 39 H 1.09003 * 109.50599 * 299.23714 * 23 22 21 40 40 H 1.09002 * 109.53262 * 179.14289 * 23 22 21 41 41 H 1.08995 * 109.52594 * 182.44482 * 24 23 22 42 42 H 1.08998 * 109.52159 * 62.24632 * 24 23 22 43 43 H 1.08996 * 109.50796 * 297.71279 * 25 24 23 44 44 H 1.09001 * 109.49863 * 177.59376 * 25 24 23 45 45 H 1.09002 * 109.46128 * 305.85180 * 26 21 20 46 46 H 1.08997 * 109.46199 * 65.82119 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5502 -7.4695 -0.0035 16 6 2.6997 -8.3618 -0.0091 17 6 2.3814 -9.6897 -0.0092 18 6 3.5946 -10.3955 -0.0190 19 6 4.5878 -9.4791 -0.0153 20 6 6.0636 -9.7844 -0.0182 21 7 6.5417 -9.8770 -1.4041 22 6 5.9404 -11.0263 -2.0925 23 6 6.3454 -11.0077 -3.5682 24 6 7.8718 -11.0668 -3.6745 25 6 8.4748 -9.8859 -2.9086 26 6 8.0082 -9.9371 -1.4520 27 8 4.0446 -8.2549 -0.0093 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0002 30 1 0.6169 -4.9209 -0.8887 31 1 0.6175 -4.9205 0.8913 32 1 3.1496 -5.7992 0.0012 33 1 1.3885 -10.1145 -0.0045 34 1 3.7123 -11.4690 -0.0240 35 1 6.6003 -8.9890 0.4989 36 1 6.2396 -10.7320 0.4909 37 1 6.2906 -11.9498 -1.6315 38 1 4.8548 -10.9700 -2.0131 39 1 5.9835 -10.0908 -4.0334 40 1 5.9116 -11.8691 -4.0761 41 1 8.1665 -11.0100 -4.7223 42 1 8.2309 -12.0017 -3.2442 43 1 8.1464 -8.9514 -3.3633 44 1 9.5626 -9.9463 -2.9446 45 1 8.4244 -9.0896 -0.9073 46 1 8.3487 -10.8657 -0.9939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935961822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:27 Heat of formation + Delta-G solvation = -62.126992 kcal Electronic energy + Delta-G solvation = -28006.555426 eV Core-core repulsion = 23897.407663 eV Total energy + Delta-G solvation = -4109.147763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.80597 -39.50303 -39.21779 -38.07243 -34.62984 -34.45432 -33.76225 -33.02833 -31.40010 -31.25083 -30.49603 -28.16726 -26.51646 -24.62583 -23.52531 -23.40385 -22.01445 -21.46630 -20.13073 -20.04576 -19.64437 -18.44946 -17.90287 -16.93623 -16.29717 -15.91780 -15.74491 -15.41789 -15.19836 -15.05611 -14.76237 -14.67345 -14.45335 -14.11447 -13.76847 -13.67678 -13.58037 -13.44080 -13.11284 -13.02501 -12.98976 -12.57529 -12.21843 -11.98374 -11.87235 -11.63156 -11.55756 -11.12230 -11.08442 -10.78760 -10.74283 -10.45448 -10.33578 -10.19598 -10.09497 -9.63528 -9.01628 -8.81135 -8.64123 -8.52624 -8.10080 -6.51238 -3.93158 1.00199 2.15115 2.52858 3.12146 3.22111 3.25781 3.27440 3.33208 3.56747 3.73701 4.11384 4.33675 4.41867 4.51429 4.58194 4.73872 4.77228 4.84823 4.86166 4.97604 4.98958 5.12029 5.15643 5.17025 5.20958 5.33867 5.48870 5.53445 5.57412 5.58565 5.67021 5.74083 5.80256 5.82691 5.88169 5.91949 6.02889 6.04559 6.22681 6.52200 6.59068 6.66021 6.84114 7.46557 7.70485 7.91568 8.24566 8.45322 9.04811 9.38895 9.86915 10.65632 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002187 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.653708 B =12798.313282 C =14240.638187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.595 6.595 12 C 0.107 3.893 13 N -0.694 5.694 14 C 0.599 3.401 15 O -0.530 6.530 16 C -0.063 4.063 17 C -0.124 4.124 18 C -0.217 4.217 19 C 0.028 3.972 20 C 0.129 3.871 21 N -0.535 5.535 22 C 0.049 3.951 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.118 4.118 26 C 0.057 3.943 27 O -0.148 6.148 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.162 -24.151 -2.871 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.213 3.787 11 O -0.481 6.481 12 C -0.020 4.020 13 N -0.346 5.346 14 C 0.384 3.616 15 O -0.409 6.409 16 C -0.116 4.116 17 C -0.145 4.145 18 C -0.237 4.237 19 C -0.025 4.025 20 C 0.002 3.998 21 N -0.260 5.260 22 C -0.079 4.079 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.070 4.070 27 O -0.042 6.042 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.256 0.744 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.000 -23.350 -3.103 26.436 hybrid contribution 0.285 0.057 0.409 0.502 sum 12.284 -23.293 -2.694 26.471 Atomic orbital electron populations 1.69613 1.06007 1.28536 1.49304 1.25331 0.95677 0.99944 0.96784 0.85807 0.79230 0.80458 0.78503 1.20249 1.20798 1.19304 1.19735 0.93481 0.81955 1.48222 0.87648 1.41783 1.09488 1.04428 1.62623 1.19689 0.88304 0.84933 0.85777 1.90515 1.13647 1.86732 1.57201 1.21048 0.91732 0.85579 1.03646 1.45636 1.12237 1.04288 1.72472 1.16512 0.86323 0.81208 0.77531 1.90866 1.14022 1.84194 1.51790 1.22116 0.80482 0.96014 1.12980 1.21871 1.00086 0.91173 1.01383 1.21532 0.91449 1.00422 1.10314 1.22448 0.95572 0.81839 1.02657 1.20506 0.86821 1.01968 0.90491 1.61820 1.07388 1.43113 1.13714 1.22235 1.00414 0.90584 0.94647 1.21585 0.95837 1.02611 0.95530 1.21590 0.95687 0.98231 1.00439 1.21598 0.99762 0.99585 0.94652 1.22105 0.86389 1.00730 0.97772 1.84076 1.19370 1.31047 1.69751 0.91581 0.77000 0.89371 0.89369 0.74439 0.82227 0.82995 0.88333 0.91192 0.94802 0.89981 0.90865 0.91481 0.91731 0.92387 0.90736 0.91368 0.90267 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 13.05 55.50 0.72 -23.20 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 16 10 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 11 O -0.59 -15.55 15.24 5.55 0.08 -15.47 16 12 C 0.11 2.02 6.15 -5.19 -0.03 1.98 16 13 N -0.69 -12.45 5.52 -62.80 -0.35 -12.80 16 14 C 0.60 10.34 7.79 -12.86 -0.10 10.24 16 15 O -0.53 -10.16 16.86 5.20 0.09 -10.07 16 16 C -0.06 -0.94 7.13 -36.79 -0.26 -1.21 16 17 C -0.12 -1.56 10.62 -39.39 -0.42 -1.98 16 18 C -0.22 -2.23 9.21 -39.89 -0.37 -2.59 16 19 C 0.03 0.32 6.22 -35.41 -0.22 0.10 16 20 C 0.13 1.08 5.50 -4.97 -0.03 1.06 16 21 N -0.53 -4.70 4.65 -236.11 -1.10 -5.80 16 22 C 0.05 0.38 5.26 -3.83 -0.02 0.36 16 23 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 24 C -0.12 -0.78 6.00 -26.61 -0.16 -0.94 16 25 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 26 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 27 O -0.15 -2.11 10.40 5.01 0.05 -2.06 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 29 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 30 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.42 7.65 7.19 -40.82 -0.29 7.36 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.10 0.79 7.99 -51.93 -0.41 0.37 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.72 5.97 -51.93 -0.31 0.40 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.54 8.02 -51.93 -0.42 0.12 16 46 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -31.60 384.62 -8.82 -40.42 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.76 Total: 13.91 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -2.28 Total: 7.40 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.78 Total: -55.54 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: 0.22 Total: -27.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.60 -8.82 -40.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935961822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.702 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds