Wall clock time and date at job start Tue Mar 31 2020 18:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99676 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99652 * 3 2 1 6 6 H 1.48499 * 109.47283 * 149.99840 * 3 2 1 7 7 C 1.38954 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00084 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99845 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00069 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.28062 * 13 12 10 15 15 O 1.21693 * 120.00200 * 359.72115 * 14 13 12 16 16 C 1.46658 * 119.99639 * 179.72443 * 14 13 12 17 17 C 1.36549 * 125.98694 * 179.71618 * 16 14 13 18 18 C 1.40364 * 106.70848 * 179.85276 * 17 16 14 19 19 C 1.35134 * 107.11069 * 0.40397 * 18 17 16 20 20 C 1.50701 * 125.61278 * 179.77849 * 19 18 17 21 21 N 1.46902 * 109.47010 * 89.98862 * 20 19 18 22 22 C 1.46849 * 110.99832 * 294.20998 * 21 20 19 23 23 C 1.53037 * 109.52277 * 174.15950 * 22 21 20 24 24 C 1.53118 * 109.28178 * 59.18261 * 23 22 21 25 25 C 1.53124 * 109.15388 * 302.34365 * 24 23 22 26 26 C 1.46845 * 111.00170 * 170.00193 * 21 20 19 27 27 O 1.33929 * 108.77005 * 359.75286 * 19 18 17 28 28 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99865 * 0.02562 * 9 7 2 30 30 H 1.09009 * 109.46601 * 60.00324 * 12 10 9 31 31 H 1.08998 * 109.47035 * 300.00831 * 12 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 33 33 H 1.08000 * 126.64269 * 359.95722 * 17 16 14 34 34 H 1.07993 * 126.44371 * 180.15294 * 18 17 16 35 35 H 1.09001 * 109.47693 * 209.98725 * 20 19 18 36 36 H 1.08997 * 109.47330 * 329.99047 * 20 19 18 37 37 H 1.08997 * 109.46512 * 294.17819 * 22 21 20 38 38 H 1.09001 * 109.46554 * 54.14084 * 22 21 20 39 39 H 1.09003 * 109.50599 * 299.23714 * 23 22 21 40 40 H 1.09002 * 109.53262 * 179.14289 * 23 22 21 41 41 H 1.08995 * 109.52594 * 182.44482 * 24 23 22 42 42 H 1.08998 * 109.52159 * 62.24632 * 24 23 22 43 43 H 1.08996 * 109.50796 * 297.71279 * 25 24 23 44 44 H 1.09001 * 109.49863 * 177.59376 * 25 24 23 45 45 H 1.09002 * 109.46128 * 305.85180 * 26 21 20 46 46 H 1.08997 * 109.46199 * 65.82119 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8630 0.0011 13 7 2.1960 -5.9765 0.0016 14 6 1.7467 -7.2471 -0.0035 15 8 0.5502 -7.4695 -0.0035 16 6 2.6997 -8.3618 -0.0091 17 6 2.3814 -9.6897 -0.0092 18 6 3.5946 -10.3955 -0.0190 19 6 4.5878 -9.4791 -0.0153 20 6 6.0636 -9.7844 -0.0182 21 7 6.5417 -9.8770 -1.4041 22 6 5.9404 -11.0263 -2.0925 23 6 6.3454 -11.0077 -3.5682 24 6 7.8718 -11.0668 -3.6745 25 6 8.4748 -9.8859 -2.9086 26 6 8.0082 -9.9371 -1.4520 27 8 4.0446 -8.2549 -0.0093 28 1 -0.4850 0.8400 -0.0004 29 1 0.3535 -2.3907 -0.0002 30 1 0.6169 -4.9209 -0.8887 31 1 0.6175 -4.9205 0.8913 32 1 3.1496 -5.7992 0.0012 33 1 1.3885 -10.1145 -0.0045 34 1 3.7123 -11.4690 -0.0240 35 1 6.6003 -8.9890 0.4989 36 1 6.2396 -10.7320 0.4909 37 1 6.2906 -11.9498 -1.6315 38 1 4.8548 -10.9700 -2.0131 39 1 5.9835 -10.0908 -4.0334 40 1 5.9116 -11.8691 -4.0761 41 1 8.1665 -11.0100 -4.7223 42 1 8.2309 -12.0017 -3.2442 43 1 8.1464 -8.9514 -3.3633 44 1 9.5626 -9.9463 -2.9446 45 1 8.4244 -9.0896 -0.9073 46 1 8.3487 -10.8657 -0.9939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935961822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:27 Heat of formation + Delta-G solvation = -84.839929 kcal Electronic energy + Delta-G solvation = -28007.540332 eV Core-core repulsion = 23897.407663 eV Total energy + Delta-G solvation = -4110.132669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.78262 -40.95390 -39.94867 -39.77606 -36.32753 -35.51874 -35.11139 -33.99765 -33.40694 -31.87797 -31.38747 -29.55839 -27.57716 -26.36104 -24.35460 -23.98777 -22.97644 -22.46253 -21.43788 -21.23542 -20.59585 -20.17119 -19.52416 -17.77996 -17.60625 -17.13865 -17.03463 -16.81592 -16.47966 -16.32835 -15.92314 -15.67957 -15.37062 -15.28948 -15.27019 -15.06876 -14.24501 -14.18517 -14.05820 -14.01023 -13.93097 -13.65642 -13.61009 -13.55906 -13.15929 -12.92317 -12.54495 -12.47463 -12.13440 -12.11931 -11.64013 -11.59267 -11.58023 -11.31624 -11.30332 -11.00673 -10.60809 -10.41950 -10.11673 -9.65508 -9.28202 -8.52590 -6.02951 -0.06878 1.24781 1.35299 1.41799 1.50962 1.55988 1.86763 1.99424 2.04283 2.30036 2.95596 3.05739 3.14244 3.45165 3.81088 3.87924 3.92033 3.96736 4.05418 4.16617 4.21241 4.33596 4.35994 4.37093 4.41149 4.52788 4.57745 4.62412 4.68793 4.80744 4.83943 4.87068 4.94559 5.03465 5.05855 5.07836 5.24336 5.31759 5.36769 5.37259 5.48436 5.80270 5.89766 6.01724 6.12377 6.33009 6.46218 6.85862 7.01677 7.40890 7.91895 8.64230 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013860 B = 0.002187 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.653708 B =12798.313282 C =14240.638187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.431 3.569 11 O -0.625 6.625 12 C 0.120 3.880 13 N -0.699 5.699 14 C 0.602 3.398 15 O -0.555 6.555 16 C -0.103 4.103 17 C -0.110 4.110 18 C -0.209 4.209 19 C 0.032 3.968 20 C 0.129 3.871 21 N -0.557 5.557 22 C 0.049 3.951 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.119 4.119 26 C 0.058 3.942 27 O -0.169 6.169 28 H 0.281 0.719 29 H 0.400 0.600 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.414 0.586 33 H 0.171 0.829 34 H 0.187 0.813 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.151 -25.971 -2.717 29.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.192 5.192 10 C 0.218 3.782 11 O -0.513 6.513 12 C -0.008 4.008 13 N -0.351 5.351 14 C 0.390 3.610 15 O -0.436 6.436 16 C -0.155 4.155 17 C -0.131 4.131 18 C -0.228 4.228 19 C -0.021 4.021 20 C 0.002 3.998 21 N -0.283 5.283 22 C -0.078 4.078 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.157 4.157 26 C -0.069 4.069 27 O -0.065 6.065 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.188 0.812 34 H 0.205 0.795 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.971 -25.189 -2.953 28.486 hybrid contribution 0.045 0.502 0.340 0.608 sum 13.016 -24.687 -2.613 28.030 Atomic orbital electron populations 1.69675 1.06967 1.29706 1.49070 1.26141 0.96573 1.02678 0.95693 0.84863 0.77905 0.76432 0.78752 1.19513 1.19491 1.19514 1.19731 0.92949 0.83520 1.50535 0.89684 1.41820 1.09630 1.04504 1.63249 1.20371 0.88094 0.85930 0.83828 1.90489 1.15288 1.87484 1.58076 1.20908 0.91407 0.83433 1.05004 1.45646 1.11794 1.04505 1.73163 1.16742 0.86552 0.81235 0.76461 1.90835 1.15090 1.84572 1.53073 1.21761 0.80793 0.95914 1.17053 1.22193 1.01504 0.90406 0.98978 1.21874 0.89879 1.01880 1.09165 1.23205 0.97161 0.81017 1.00737 1.20677 0.84915 1.03420 0.90782 1.61771 1.08478 1.44069 1.13986 1.22234 0.99779 0.90995 0.94775 1.21593 0.96681 1.01963 0.95445 1.21574 0.94848 0.98502 1.00697 1.21609 1.00662 0.98831 0.94571 1.22136 0.85378 1.01505 0.97905 1.84053 1.19119 1.32865 1.70462 0.90989 0.76549 0.87991 0.87866 0.74789 0.81160 0.79527 0.88289 0.88189 0.93022 0.90999 0.93154 0.90315 0.91462 0.91119 0.92813 0.89948 0.90391 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.79 13.05 21.66 0.28 -48.51 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 42.13 29.55 68.60 2.03 44.16 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.41 5.29 -306.98 -1.62 -30.04 16 10 C 0.43 20.53 7.85 87.66 0.69 21.22 16 11 O -0.63 -33.71 15.24 -3.07 -0.05 -33.76 16 12 C 0.12 4.54 6.15 85.63 0.53 5.07 16 13 N -0.70 -25.63 5.52 -470.83 -2.60 -28.23 16 14 C 0.60 21.09 7.79 86.44 0.67 21.76 16 15 O -0.55 -21.38 16.86 -4.33 -0.07 -21.45 16 16 C -0.10 -3.08 7.13 24.07 0.17 -2.91 16 17 C -0.11 -2.61 10.62 22.39 0.24 -2.37 16 18 C -0.21 -3.75 9.21 22.07 0.20 -3.54 16 19 C 0.03 0.66 6.22 24.97 0.16 0.82 16 20 C 0.13 1.88 5.50 85.56 0.47 2.35 16 21 N -0.56 -8.85 4.65 -900.92 -4.19 -13.03 16 22 C 0.05 0.67 5.26 86.33 0.45 1.12 16 23 C -0.12 -1.59 6.09 30.65 0.19 -1.41 16 24 C -0.12 -1.30 6.00 30.68 0.18 -1.12 16 25 C -0.12 -1.46 6.09 30.65 0.19 -1.28 16 26 C 0.06 0.71 5.46 86.33 0.47 1.18 16 27 O -0.17 -4.83 10.40 -4.97 -0.05 -4.88 16 28 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 30 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 31 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.41 15.76 7.19 -92.71 -0.67 15.09 16 33 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.10 1.43 7.99 -2.39 -0.02 1.41 16 36 H 0.10 0.88 8.12 -2.39 -0.02 0.86 16 37 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 1.10 5.97 -2.39 -0.01 1.09 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.96 8.02 -2.39 -0.02 0.94 16 46 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -68.86 384.62 -0.77 -69.62 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.38 Total: 43.36 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 5.89 Total: 22.76 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -8.13 Total: -119.80 kcal Atomic # 8 Polarization: -59.92 SS G_CDS: -0.17 Total: -60.09 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.86 -0.77 -69.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935961822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.218 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds