Wall clock time and date at job start Tue Mar 31 2020 19:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47294 * 85.35436 * 3 2 1 5 5 H 1.48496 * 109.47230 * 205.35978 * 3 2 1 6 6 H 1.48504 * 109.46700 * 325.35692 * 3 2 1 7 7 C 1.38812 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00305 * 197.96770 * 7 2 1 9 9 N 1.36933 * 120.00097 * 17.96253 * 7 2 1 10 10 C 1.46938 * 120.63887 * 27.30912 * 9 7 2 11 11 C 1.53629 * 108.53276 * 126.29677 * 10 9 7 12 12 C 1.53000 * 109.27549 * 54.80996 * 11 10 9 13 13 C 1.52984 * 109.63187 * 298.65577 * 12 11 10 14 14 C 1.46926 * 120.64668 * 207.59149 * 9 7 2 15 15 C 1.53251 * 109.36314 * 178.71434 * 12 11 10 16 16 N 1.47152 * 108.41020 * 187.91233 * 15 12 11 17 17 C 1.34772 * 120.98615 * 230.49332 * 16 15 12 18 18 O 1.21279 * 120.00151 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00068 * 180.02562 * 17 16 15 20 20 C 1.50699 * 109.47321 * 179.97438 * 19 17 16 21 21 C 1.41379 * 128.00945 * 269.68339 * 20 19 17 22 22 N 1.30178 * 106.39697 * 179.89492 * 21 20 19 23 23 O 1.20922 * 111.60335 * 0.38674 * 22 21 20 24 24 C 1.34045 * 111.56484 * 359.74595 * 23 22 21 25 25 C 1.47146 * 118.02485 * 50.47594 * 16 15 12 26 26 C 1.53299 * 108.37377 * 309.40455 * 25 16 15 27 27 O 1.42898 * 109.54901 * 58.91180 * 12 11 10 28 28 H 0.97004 * 120.00500 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58803 * 246.12230 * 10 9 7 30 30 H 1.09000 * 109.58639 * 6.55983 * 10 9 7 31 31 H 1.09000 * 109.62875 * 294.80567 * 11 10 9 32 32 H 1.08998 * 109.44250 * 174.69846 * 11 10 9 33 33 H 1.09001 * 109.49185 * 301.24624 * 13 12 11 34 34 H 1.09000 * 109.51583 * 181.18566 * 13 12 11 35 35 H 1.08998 * 109.58602 * 353.44186 * 14 9 7 36 36 H 1.09005 * 109.58769 * 113.71694 * 14 9 7 37 37 H 1.09003 * 109.67597 * 307.64603 * 15 12 11 38 38 H 1.09007 * 109.67682 * 68.14414 * 15 12 11 39 39 H 1.08995 * 109.46770 * 300.00419 * 19 17 16 40 40 H 1.09003 * 109.47017 * 60.00340 * 19 17 16 41 41 H 1.08004 * 126.80048 * 0.03040 * 21 20 19 42 42 H 1.08005 * 126.77112 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.68878 * 69.12549 * 25 16 15 44 44 H 1.09000 * 109.68417 * 189.68538 * 25 16 15 45 45 H 1.08999 * 109.51680 * 172.28258 * 26 25 16 46 46 H 1.09005 * 109.51118 * 292.38099 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3995 2.1032 1.3955 5 1 3.5933 1.4139 -0.5996 6 1 1.5001 2.6223 -0.7959 7 6 2.0102 -1.2021 0.0005 8 1 3.0507 -1.2248 0.2891 9 7 1.3757 -2.3593 -0.3647 10 6 0.2344 -2.3277 -1.2896 11 6 0.5211 -3.2905 -2.4520 12 6 0.8379 -4.6785 -1.8917 13 6 2.0845 -4.6039 -1.0081 14 6 1.8188 -3.6559 0.1656 15 6 1.0927 -5.6483 -3.0507 16 7 1.2056 -7.0089 -2.5018 17 6 2.2477 -7.8017 -2.8213 18 8 3.1104 -7.3964 -3.5712 19 6 2.3408 -9.1918 -2.2468 20 6 3.5893 -9.8638 -2.7574 21 6 3.7391 -10.6549 -3.9195 22 7 4.9883 -11.0193 -3.9575 23 8 5.6071 -10.5869 -3.0130 24 6 4.8265 -9.8544 -2.2062 25 6 0.1473 -7.4781 -1.5935 26 6 -0.0587 -6.4196 -0.5040 27 8 -0.2692 -5.1461 -1.1185 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6689 -2.6411 -0.7663 30 1 0.1041 -1.3163 -1.6747 31 1 1.3730 -2.9271 -3.0268 32 1 -0.3547 -3.3502 -3.0981 33 1 2.9240 -4.2303 -1.5945 34 1 2.3207 -5.5974 -0.6270 35 1 2.7345 -3.5215 0.7413 36 1 1.0422 -4.0733 0.8066 37 1 0.2622 -5.6044 -3.7553 38 1 2.0190 -5.3785 -3.5581 39 1 2.3780 -9.1335 -1.1590 40 1 1.4677 -9.7696 -2.5502 41 1 2.9700 -10.9054 -4.6352 42 1 5.1251 -9.3556 -1.2959 43 1 -0.7795 -7.6171 -2.1503 44 1 0.4469 -8.4215 -1.1370 45 1 -0.9287 -6.6814 0.0983 46 1 0.8250 -6.3758 0.1328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949164216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:08 Heat of formation + Delta-G solvation = 21.641606 kcal Electronic energy + Delta-G solvation = -30159.005557 eV Core-core repulsion = 26053.490273 eV Total energy + Delta-G solvation = -4105.515284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.15983 -40.73701 -38.91994 -36.26146 -34.90355 -34.64971 -33.06984 -32.37189 -31.24819 -29.94186 -29.36881 -28.82645 -26.60061 -24.29238 -23.55933 -23.21286 -22.32708 -22.05482 -20.87189 -19.24053 -18.96570 -18.10224 -17.87642 -17.30857 -16.91709 -16.26195 -15.88805 -15.34482 -15.12574 -14.94154 -14.79354 -14.50972 -14.05460 -13.75719 -13.62849 -13.39557 -13.36511 -13.27501 -13.00812 -12.45099 -12.38340 -12.00837 -11.78865 -11.54972 -11.49086 -11.36714 -11.06724 -10.85099 -10.66919 -10.61319 -10.41195 -10.30497 -10.19527 -9.99041 -9.86085 -9.64570 -9.51857 -9.36675 -8.48680 -8.44096 -6.64970 -5.77286 -3.18463 1.25561 1.95326 2.42975 2.78469 3.02887 3.37942 3.45568 3.48333 3.93057 3.99744 4.29491 4.37309 4.49217 4.51116 4.69392 4.77421 4.83805 5.00081 5.03698 5.05992 5.22936 5.30857 5.33584 5.38462 5.40312 5.50897 5.62140 5.64661 5.71672 5.76403 5.85560 6.01190 6.22501 6.26071 6.29909 6.50068 6.53198 6.64000 6.72267 6.98117 7.19551 7.39806 7.52503 7.73023 7.81166 7.98247 7.99912 8.46297 9.23224 9.86954 10.44350 11.31035 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020457 B = 0.002776 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.429295 B =10084.097665 C =10785.396258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.118 3.882 13 C -0.151 4.151 14 C 0.152 3.848 15 C 0.089 3.911 16 N -0.610 5.610 17 C 0.514 3.486 18 O -0.532 6.532 19 C -0.062 4.062 20 C -0.187 4.187 21 C 0.004 3.996 22 N -0.367 5.367 23 O 0.097 5.903 24 C -0.041 4.041 25 C 0.071 3.929 26 C 0.043 3.957 27 O -0.355 6.355 28 H 0.253 0.747 29 H 0.028 0.972 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.188 0.812 42 H 0.216 0.784 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 -21.356 -2.858 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.078 3.922 13 C -0.191 4.191 14 C 0.026 3.974 15 C -0.033 4.033 16 N -0.344 5.344 17 C 0.302 3.698 18 O -0.408 6.408 19 C -0.103 4.103 20 C -0.191 4.191 21 C -0.175 4.175 22 N -0.071 5.071 23 O 0.033 5.967 24 C -0.123 4.123 25 C -0.052 4.052 26 C -0.035 4.035 27 O -0.274 6.274 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.205 0.795 42 H 0.232 0.768 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.431 -21.618 -4.092 22.048 hybrid contribution -0.216 1.105 0.411 1.199 sum 1.215 -20.513 -3.681 20.876 Atomic orbital electron populations 1.70044 1.05222 1.25427 1.53835 1.25014 0.95244 0.98349 1.01027 0.86327 0.79288 0.83863 0.77584 1.21520 1.20446 1.21552 1.19173 0.92849 0.84992 1.41186 0.91804 1.44060 1.36254 1.01114 1.49913 1.20782 0.89011 0.97598 0.87378 1.22283 1.00974 0.92882 1.00559 1.21767 0.87032 0.93825 0.89545 1.22509 0.97198 0.99472 0.99878 1.20763 0.97336 0.86985 0.92340 1.22495 1.03534 0.80455 0.96852 1.48135 1.23326 1.15378 1.47594 1.20451 0.81119 0.86743 0.81489 1.90735 1.38961 1.74872 1.36203 1.19918 0.95423 0.92911 1.02016 1.20721 0.96405 1.04172 0.97825 1.24891 0.94559 0.99104 0.98954 1.73860 1.07494 1.19099 1.06601 1.84814 1.36113 1.49866 1.25935 1.25800 0.89885 0.97611 0.98998 1.22534 0.91427 0.98610 0.92630 1.22901 1.02651 0.84025 0.93972 1.88091 1.38918 1.33502 1.66850 0.93667 0.95374 0.89477 0.91122 0.92371 0.91416 0.93175 0.93167 0.96179 0.91053 0.88387 0.87364 0.87411 0.79538 0.76759 0.90406 0.89212 0.88055 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.68 2.99 -172.04 -0.51 -15.19 16 10 C 0.18 4.21 5.11 -3.48 -0.02 4.19 16 11 C -0.13 -2.38 5.12 -26.40 -0.14 -2.51 16 12 C 0.12 1.92 0.68 -90.50 -0.06 1.86 16 13 C -0.15 -2.59 4.33 -26.64 -0.12 -2.71 16 14 C 0.15 3.16 6.28 -3.71 -0.02 3.14 16 15 C 0.09 1.25 5.29 -3.56 -0.02 1.23 16 16 N -0.61 -6.98 2.52 -172.30 -0.43 -7.41 16 17 C 0.51 6.03 7.70 -10.99 -0.08 5.94 16 18 O -0.53 -8.57 15.50 5.56 0.09 -8.48 16 19 C -0.06 -0.46 4.66 -29.03 -0.14 -0.59 16 20 C -0.19 -1.71 4.82 -104.42 -0.50 -2.22 16 21 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 22 N -0.37 -4.38 12.07 30.36 0.37 -4.01 16 23 O 0.10 1.05 11.20 17.16 0.19 1.24 16 24 C -0.04 -0.35 12.26 29.74 0.36 0.01 16 25 C 0.07 0.60 6.54 -3.53 -0.02 0.58 16 26 C 0.04 0.47 6.60 37.31 0.25 0.72 16 27 O -0.36 -5.67 9.00 -35.23 -0.32 -5.99 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.72 7.82 -51.93 -0.41 0.31 16 30 H 0.09 2.31 6.02 -51.93 -0.31 1.99 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.76 6.16 -51.93 -0.32 0.44 16 35 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 36 H 0.02 0.43 7.83 -51.93 -0.41 0.02 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.53 7.08 -51.93 -0.37 1.16 16 39 H 0.11 0.53 7.66 -51.93 -0.40 0.13 16 40 H 0.11 0.53 8.02 -51.93 -0.42 0.11 16 41 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.22 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.44 6.05 -51.93 -0.31 0.13 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.68 6.29 -51.93 -0.33 0.35 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -34.55 363.46 -7.11 -41.66 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.61 Total: -0.86 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.94 Total: 2.39 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.04 Total: -52.02 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.04 Total: -13.23 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.55 -7.11 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949164216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.297 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds