Wall clock time and date at job start Tue Mar 31 2020 19:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00088 * 2 1 4 4 H 1.48500 * 109.47294 * 85.35436 * 3 2 1 5 5 H 1.48496 * 109.47230 * 205.35978 * 3 2 1 6 6 H 1.48504 * 109.46700 * 325.35692 * 3 2 1 7 7 C 1.38812 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00305 * 197.96770 * 7 2 1 9 9 N 1.36933 * 120.00097 * 17.96253 * 7 2 1 10 10 C 1.46938 * 120.63887 * 27.30912 * 9 7 2 11 11 C 1.53629 * 108.53276 * 126.29677 * 10 9 7 12 12 C 1.53000 * 109.27549 * 54.80996 * 11 10 9 13 13 C 1.52984 * 109.63187 * 298.65577 * 12 11 10 14 14 C 1.46926 * 120.64668 * 207.59149 * 9 7 2 15 15 C 1.53251 * 109.36314 * 178.71434 * 12 11 10 16 16 N 1.47152 * 108.41020 * 187.91233 * 15 12 11 17 17 C 1.34772 * 120.98615 * 230.49332 * 16 15 12 18 18 O 1.21279 * 120.00151 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00068 * 180.02562 * 17 16 15 20 20 C 1.50699 * 109.47321 * 179.97438 * 19 17 16 21 21 C 1.41379 * 128.00945 * 269.68339 * 20 19 17 22 22 N 1.30178 * 106.39697 * 179.89492 * 21 20 19 23 23 O 1.20922 * 111.60335 * 0.38674 * 22 21 20 24 24 C 1.34045 * 111.56484 * 359.74595 * 23 22 21 25 25 C 1.47146 * 118.02485 * 50.47594 * 16 15 12 26 26 C 1.53299 * 108.37377 * 309.40455 * 25 16 15 27 27 O 1.42898 * 109.54901 * 58.91180 * 12 11 10 28 28 H 0.97004 * 120.00500 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.58803 * 246.12230 * 10 9 7 30 30 H 1.09000 * 109.58639 * 6.55983 * 10 9 7 31 31 H 1.09000 * 109.62875 * 294.80567 * 11 10 9 32 32 H 1.08998 * 109.44250 * 174.69846 * 11 10 9 33 33 H 1.09001 * 109.49185 * 301.24624 * 13 12 11 34 34 H 1.09000 * 109.51583 * 181.18566 * 13 12 11 35 35 H 1.08998 * 109.58602 * 353.44186 * 14 9 7 36 36 H 1.09005 * 109.58769 * 113.71694 * 14 9 7 37 37 H 1.09003 * 109.67597 * 307.64603 * 15 12 11 38 38 H 1.09007 * 109.67682 * 68.14414 * 15 12 11 39 39 H 1.08995 * 109.46770 * 300.00419 * 19 17 16 40 40 H 1.09003 * 109.47017 * 60.00340 * 19 17 16 41 41 H 1.08004 * 126.80048 * 0.03040 * 21 20 19 42 42 H 1.08005 * 126.77112 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.68878 * 69.12549 * 25 16 15 44 44 H 1.09000 * 109.68417 * 189.68538 * 25 16 15 45 45 H 1.08999 * 109.51680 * 172.28258 * 26 25 16 46 46 H 1.09005 * 109.51118 * 292.38099 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3995 2.1032 1.3955 5 1 3.5933 1.4139 -0.5996 6 1 1.5001 2.6223 -0.7959 7 6 2.0102 -1.2021 0.0005 8 1 3.0507 -1.2248 0.2891 9 7 1.3757 -2.3593 -0.3647 10 6 0.2344 -2.3277 -1.2896 11 6 0.5211 -3.2905 -2.4520 12 6 0.8379 -4.6785 -1.8917 13 6 2.0845 -4.6039 -1.0081 14 6 1.8188 -3.6559 0.1656 15 6 1.0927 -5.6483 -3.0507 16 7 1.2056 -7.0089 -2.5018 17 6 2.2477 -7.8017 -2.8213 18 8 3.1104 -7.3964 -3.5712 19 6 2.3408 -9.1918 -2.2468 20 6 3.5893 -9.8638 -2.7574 21 6 3.7391 -10.6549 -3.9195 22 7 4.9883 -11.0193 -3.9575 23 8 5.6071 -10.5869 -3.0130 24 6 4.8265 -9.8544 -2.2062 25 6 0.1473 -7.4781 -1.5935 26 6 -0.0587 -6.4196 -0.5040 27 8 -0.2692 -5.1461 -1.1185 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6689 -2.6411 -0.7663 30 1 0.1041 -1.3163 -1.6747 31 1 1.3730 -2.9271 -3.0268 32 1 -0.3547 -3.3502 -3.0981 33 1 2.9240 -4.2303 -1.5945 34 1 2.3207 -5.5974 -0.6270 35 1 2.7345 -3.5215 0.7413 36 1 1.0422 -4.0733 0.8066 37 1 0.2622 -5.6044 -3.7553 38 1 2.0190 -5.3785 -3.5581 39 1 2.3780 -9.1335 -1.1590 40 1 1.4677 -9.7696 -2.5502 41 1 2.9700 -10.9054 -4.6352 42 1 5.1251 -9.3556 -1.2959 43 1 -0.7795 -7.6171 -2.1503 44 1 0.4469 -8.4215 -1.1370 45 1 -0.9287 -6.6814 0.0983 46 1 0.8250 -6.3758 0.1328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949164216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:07 Heat of formation + Delta-G solvation = -1.496363 kcal Electronic energy + Delta-G solvation = -30160.008894 eV Core-core repulsion = 26053.490273 eV Total energy + Delta-G solvation = -4106.518621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.87135 -41.77994 -40.03099 -37.78382 -35.73368 -35.59578 -34.64063 -33.18235 -32.84034 -31.53156 -30.21534 -30.02173 -27.91127 -25.90752 -24.64327 -23.96497 -23.77174 -23.11468 -22.15292 -20.55286 -19.96430 -18.87778 -18.77853 -18.60190 -18.07464 -17.25515 -16.90911 -16.76927 -16.42717 -16.03321 -15.95576 -15.72348 -15.19157 -15.15247 -14.88808 -14.77524 -14.61860 -14.10962 -14.02630 -13.71548 -13.25514 -13.16053 -13.08630 -13.04269 -12.88900 -12.68641 -12.61155 -12.25244 -12.14650 -12.08960 -11.84911 -11.71956 -11.45136 -11.38143 -11.26017 -10.87048 -10.78143 -10.52278 -10.28792 -9.49013 -8.66626 -7.86802 -5.31034 0.59821 1.24788 1.45557 1.47736 1.57664 1.60475 1.97376 2.42471 2.51269 2.85894 3.27463 3.37287 3.54423 3.66294 3.77918 3.79136 3.83491 3.94599 3.97354 4.09259 4.22123 4.28031 4.36933 4.43867 4.49097 4.58380 4.65339 4.71124 4.73174 4.76198 4.80953 4.83213 4.93162 4.95508 5.00042 5.09014 5.14095 5.15372 5.31104 5.38315 5.47241 5.64753 5.80472 6.37035 6.39433 6.41746 7.13880 7.15694 7.31504 7.87521 8.39728 9.19338 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020457 B = 0.002776 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.429295 B =10084.097665 C =10785.396258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.272 1.272 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.609 5.609 10 C 0.189 3.811 11 C -0.120 4.120 12 C 0.128 3.872 13 C -0.136 4.136 14 C 0.152 3.848 15 C 0.099 3.901 16 N -0.610 5.610 17 C 0.512 3.488 18 O -0.583 6.583 19 C -0.052 4.052 20 C -0.199 4.199 21 C -0.003 4.003 22 N -0.403 5.403 23 O 0.079 5.921 24 C -0.039 4.039 25 C 0.075 3.925 26 C 0.031 3.969 27 O -0.382 6.382 28 H 0.250 0.750 29 H 0.002 0.998 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.205 0.795 42 H 0.248 0.752 43 H 0.091 0.909 44 H 0.137 0.863 45 H 0.124 0.876 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -23.723 -2.269 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.197 1.197 6 H -0.217 1.217 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.333 5.333 10 C 0.063 3.937 11 C -0.160 4.160 12 C 0.087 3.913 13 C -0.175 4.175 14 C 0.026 3.974 15 C -0.025 4.025 16 N -0.343 5.343 17 C 0.302 3.698 18 O -0.463 6.463 19 C -0.092 4.092 20 C -0.203 4.203 21 C -0.182 4.182 22 N -0.110 5.110 23 O 0.018 5.982 24 C -0.120 4.120 25 C -0.047 4.047 26 C -0.046 4.046 27 O -0.302 6.302 28 H 0.059 0.941 29 H 0.020 0.980 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.222 0.778 42 H 0.264 0.736 43 H 0.109 0.891 44 H 0.155 0.845 45 H 0.142 0.858 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.179 -24.030 -3.470 24.308 hybrid contribution -0.178 1.807 0.306 1.841 sum 1.001 -22.223 -3.165 22.469 Atomic orbital electron populations 1.70194 1.06595 1.25818 1.55200 1.25749 0.96002 1.01365 1.01338 0.85317 0.78198 0.79836 0.77433 1.21192 1.19670 1.21743 1.19484 0.93060 0.86318 1.40617 0.91900 1.44320 1.36328 1.01967 1.50672 1.20486 0.87911 0.96824 0.88437 1.22088 1.01455 0.93688 0.98728 1.21456 0.86618 0.92965 0.90226 1.22312 0.97268 0.99615 0.98318 1.20856 0.96793 0.85976 0.93730 1.22110 1.02804 0.81846 0.95711 1.48221 1.24172 1.14122 1.47800 1.21251 0.79935 0.88059 0.80544 1.90727 1.40806 1.76168 1.38578 1.20038 0.95754 0.89734 1.03645 1.21017 0.97430 1.04310 0.97570 1.25368 0.94425 0.98739 0.99643 1.73851 1.08585 1.20815 1.07732 1.84770 1.36704 1.50501 1.26211 1.26516 0.89690 0.96450 0.99375 1.22753 0.91264 0.99231 0.91405 1.23261 1.03706 0.82722 0.94925 1.88052 1.38569 1.36333 1.67206 0.94072 0.98000 0.93040 0.91677 0.90770 0.92973 0.90399 0.93495 0.96429 0.90262 0.90315 0.83878 0.84088 0.77802 0.73628 0.89073 0.84548 0.85783 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 11.20 21.65 0.24 -55.36 16 2 C -0.05 -2.77 4.90 84.86 0.42 -2.35 16 3 Si 0.96 45.29 29.59 68.60 2.03 47.32 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.78 9.59 84.03 0.81 -13.98 16 8 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 9 N -0.61 -31.01 2.99 -698.21 -2.09 -33.10 16 10 C 0.19 9.26 5.11 86.51 0.44 9.70 16 11 C -0.12 -4.54 5.12 30.81 0.16 -4.38 16 12 C 0.13 4.00 0.68 -10.71 -0.01 4.00 16 13 C -0.14 -4.53 4.33 30.65 0.13 -4.39 16 14 C 0.15 6.30 6.28 86.36 0.54 6.85 16 15 C 0.10 2.60 5.29 86.34 0.46 3.06 16 16 N -0.61 -11.76 2.52 -817.43 -2.06 -13.82 16 17 C 0.51 10.23 7.70 87.66 0.68 10.90 16 18 O -0.58 -17.85 15.50 -3.03 -0.05 -17.90 16 19 C -0.05 -0.50 4.66 29.10 0.14 -0.36 16 20 C -0.20 -3.03 4.82 -19.74 -0.10 -3.12 16 21 C 0.00 -0.06 12.16 85.71 1.04 0.99 16 22 N -0.40 -9.35 12.07 -59.26 -0.72 -10.06 16 23 O 0.08 1.65 11.20 71.58 0.80 2.45 16 24 C -0.04 -0.57 12.26 67.17 0.82 0.25 16 25 C 0.08 0.88 6.54 86.36 0.56 1.44 16 26 C 0.03 0.57 6.60 72.08 0.48 1.04 16 27 O -0.38 -11.53 9.00 -148.98 -1.34 -12.87 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.00 0.10 7.82 -2.39 -0.02 0.08 16 30 H 0.05 2.86 6.02 -2.39 -0.01 2.85 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 2.15 6.16 -2.39 -0.01 2.14 16 35 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 36 H 0.02 0.75 7.83 -2.38 -0.02 0.73 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.41 7.08 -2.38 -0.02 2.39 16 39 H 0.14 0.43 7.66 -2.39 -0.02 0.41 16 40 H 0.14 0.48 8.02 -2.39 -0.02 0.46 16 41 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.25 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.14 0.36 6.05 -2.39 -0.01 0.35 16 45 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.07 6.29 -2.38 -0.02 1.06 16 Total: -1.00 -80.02 363.46 4.38 -75.63 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.99 Total: 8.08 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.57 Total: 9.63 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -4.62 Total: -112.35 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.59 Total: -28.32 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -80.02 4.38 -75.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949164216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.137 kcal (2) G-P(sol) polarization free energy of solvation -80.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds