Wall clock time and date at job start Tue Mar 31 2020 19:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48501 * 109.47616 * 240.00107 * 3 2 1 5 5 H 1.48503 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47204 * 120.00256 * 3 2 1 7 7 C 1.38810 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00231 * 163.55035 * 7 2 1 9 9 N 1.36938 * 120.00249 * 343.55170 * 7 2 1 10 10 C 1.47152 * 120.98976 * 153.35144 * 9 7 2 11 11 C 1.53305 * 108.37027 * 129.39057 * 10 9 7 12 12 O 1.42965 * 109.22704 * 52.35202 * 11 10 9 13 13 C 1.42902 * 114.20818 * 297.50306 * 12 11 10 14 14 C 1.53304 * 109.51837 * 182.16190 * 13 12 11 15 15 C 1.53198 * 109.18411 * 59.14492 * 14 13 12 16 16 N 1.46926 * 108.89066 * 54.51836 * 15 14 13 17 17 C 1.34774 * 120.64423 * 126.23745 * 16 15 14 18 18 O 1.21284 * 119.99435 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00426 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.47167 * 180.02562 * 19 17 16 21 21 C 1.41382 * 128.00913 * 89.99794 * 20 19 17 22 22 N 1.30178 * 106.39404 * 179.97438 * 21 20 19 23 23 O 1.20924 * 111.60597 * 0.02562 * 22 21 20 24 24 C 1.34044 * 111.56465 * 359.76313 * 23 22 21 25 25 C 1.46938 * 118.72081 * 306.25789 * 16 15 14 26 26 C 1.52987 * 109.55818 * 302.53222 * 13 12 11 27 27 C 1.47155 * 120.98247 * 333.33541 * 9 7 2 28 28 H 0.96999 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.68382 * 249.10541 * 10 9 7 30 30 H 1.08999 * 109.68425 * 9.66978 * 10 9 7 31 31 H 1.09000 * 109.50899 * 172.27707 * 11 10 9 32 32 H 1.09003 * 109.50904 * 292.42628 * 11 10 9 33 33 H 1.08994 * 109.68173 * 299.17006 * 14 13 12 34 34 H 1.08998 * 109.46694 * 178.98821 * 14 13 12 35 35 H 1.09000 * 109.58561 * 294.66421 * 15 14 13 36 36 H 1.08998 * 109.58753 * 174.37638 * 15 14 13 37 37 H 1.09005 * 109.47311 * 299.99718 * 19 17 16 38 38 H 1.09000 * 109.47379 * 59.99746 * 19 17 16 39 39 H 1.07996 * 126.80281 * 359.97438 * 21 20 19 40 40 H 1.08005 * 126.77448 * 180.28545 * 24 23 22 41 41 H 1.08994 * 109.59105 * 173.45756 * 25 16 15 42 42 H 1.08999 * 109.58681 * 293.74280 * 25 16 15 43 43 H 1.08993 * 109.49041 * 180.99848 * 26 13 12 44 44 H 1.08993 * 109.51591 * 60.93341 * 26 13 12 45 45 H 1.08998 * 109.68334 * 110.76278 * 27 9 7 46 46 H 1.09006 * 109.67804 * 350.21743 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2211 -0.2654 9 7 1.3677 -2.3640 0.3347 10 6 1.8299 -3.6618 -0.1823 11 6 1.9764 -4.6280 0.9988 12 8 0.7599 -4.6415 1.7497 13 6 0.4183 -3.3830 2.3344 14 6 -0.8682 -3.5318 3.1548 15 6 -0.6498 -4.5833 4.2473 16 7 0.5323 -4.2109 5.0364 17 6 0.4564 -4.1021 6.3776 18 8 -0.5951 -4.3118 6.9445 19 6 1.6777 -3.7186 7.1728 20 6 1.3277 -3.6676 8.6377 21 6 1.3967 -4.7138 9.5862 22 7 0.9994 -4.2097 10.7188 23 8 0.7050 -3.0421 10.6076 24 6 0.8788 -2.6076 9.3516 25 6 1.7987 -3.9590 4.3352 26 6 1.5572 -2.9137 3.2415 27 6 0.1947 -2.3517 1.2231 28 1 -0.4850 0.8400 0.0004 29 1 1.1009 -4.0556 -0.8905 30 1 2.7933 -3.5379 -0.6770 31 1 2.1848 -5.6306 0.6253 32 1 2.7955 -4.2995 1.6385 33 1 -1.6840 -3.8472 2.5044 34 1 -1.1182 -2.5759 3.6149 35 1 -0.4903 -5.5591 3.7886 36 1 -1.5246 -4.6232 4.8962 37 1 2.4625 -4.4580 7.0127 38 1 2.0297 -2.7392 6.8487 39 1 1.7157 -5.7299 9.4067 40 1 0.6959 -1.6096 8.9815 41 1 2.5394 -3.5843 5.0416 42 1 2.1580 -4.8847 3.8858 43 1 1.2881 -1.9625 3.7006 44 1 2.4649 -2.7887 2.6513 45 1 -0.6986 -2.6118 0.6553 46 1 0.0761 -1.3604 1.6609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949447525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:02 Heat of formation + Delta-G solvation = 17.574217 kcal Electronic energy + Delta-G solvation = -30222.437053 eV Core-core repulsion = 26116.745394 eV Total energy + Delta-G solvation = -4105.691659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.07099 -40.40899 -38.98232 -36.18570 -34.77086 -34.44328 -32.71972 -32.17994 -31.30969 -30.95656 -29.26855 -28.04737 -26.51621 -23.82295 -23.53559 -23.04008 -22.90842 -21.98566 -20.80230 -19.42772 -18.64632 -17.99494 -17.74643 -17.10642 -16.92903 -15.87595 -15.69688 -15.47811 -15.04114 -14.77556 -14.53518 -14.36388 -13.93761 -13.69835 -13.55811 -13.52083 -13.23620 -13.18580 -12.85322 -12.41654 -12.27129 -12.22820 -11.80246 -11.65327 -11.40700 -11.09055 -10.97344 -10.94075 -10.71064 -10.63964 -10.51450 -10.34111 -10.32868 -9.96345 -9.92422 -9.52558 -9.43149 -9.07769 -8.59413 -8.48555 -6.77829 -5.89785 -3.33787 1.34630 2.05643 2.59332 3.01080 3.16482 3.29014 3.35617 3.36305 4.10062 4.26599 4.39004 4.47684 4.50622 4.61991 4.87917 4.97144 5.08638 5.16626 5.23189 5.28479 5.36401 5.41993 5.45472 5.49485 5.52680 5.60481 5.74139 5.81034 5.84865 5.86814 5.92904 6.03831 6.13198 6.23826 6.31868 6.44875 6.50337 6.63515 6.71636 6.77031 7.03885 7.44210 7.44448 7.64932 7.89447 8.08026 8.15989 8.28250 9.06042 9.68984 10.26566 11.17831 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.003130 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.986719 B = 8943.813541 C = 9943.088267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.381 6.381 13 C 0.096 3.904 14 C -0.115 4.115 15 C 0.118 3.882 16 N -0.603 5.603 17 C 0.514 3.486 18 O -0.543 6.543 19 C -0.065 4.065 20 C -0.183 4.183 21 C 0.004 3.996 22 N -0.368 5.368 23 O 0.095 5.905 24 C -0.044 4.044 25 C 0.109 3.891 26 C -0.147 4.147 27 C 0.158 3.842 28 H 0.256 0.744 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.187 0.813 40 H 0.216 0.784 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.026 0.974 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -7.663 12.261 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.085 0.915 9 N -0.316 5.316 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.301 6.301 13 C 0.055 3.945 14 C -0.153 4.153 15 C -0.004 4.004 16 N -0.337 5.337 17 C 0.302 3.698 18 O -0.420 6.420 19 C -0.105 4.105 20 C -0.187 4.187 21 C -0.175 4.175 22 N -0.073 5.073 23 O 0.031 5.969 24 C -0.126 4.126 25 C -0.014 4.014 26 C -0.186 4.186 27 C 0.032 3.968 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.205 0.795 40 H 0.232 0.768 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.044 0.956 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.796 -8.262 13.803 16.528 hybrid contribution 0.825 1.259 -1.331 2.009 sum 4.622 -7.004 12.471 15.031 Atomic orbital electron populations 1.70007 1.05245 1.25780 1.53584 1.25042 0.95300 0.98400 1.00736 0.86373 0.78915 0.83324 0.78167 1.20852 1.21565 1.20979 1.19117 0.92368 0.84417 1.42531 0.91525 1.44052 1.33609 1.01300 1.52683 1.21593 0.98475 0.87714 0.93948 1.23012 0.86874 0.99401 0.93906 1.87792 1.41695 1.31923 1.68678 1.22207 0.92790 0.85916 0.93566 1.21886 0.97375 0.99614 0.96440 1.21545 0.87930 0.98249 0.92653 1.48134 1.11925 1.68079 1.05523 1.20404 0.89980 0.77413 0.82045 1.90702 1.30947 1.50612 1.69752 1.19946 0.97302 1.04993 0.88258 1.20762 1.07600 0.93439 0.96918 1.24892 1.02283 1.01946 0.88384 1.73847 1.16447 0.92855 1.24105 1.84801 1.63116 1.19857 1.29097 1.25791 1.01196 1.01665 0.83919 1.21815 0.84653 0.99883 0.95007 1.22325 1.01664 0.98035 0.96548 1.21362 0.89052 0.97456 0.88903 0.93433 0.95779 0.92165 0.90326 0.93597 0.90105 0.90472 0.90892 0.89573 0.87455 0.87276 0.79547 0.76784 0.90380 0.90969 0.91017 0.89043 0.95567 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.88 11.14 55.49 0.62 -24.26 16 2 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 3 Si 0.90 20.49 29.58 -169.99 -5.03 15.46 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.49 9.65 -15.06 -0.15 -6.64 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -13.71 2.55 -171.84 -0.44 -14.15 16 10 C 0.11 2.12 6.74 -3.53 -0.02 2.10 16 11 C 0.05 0.73 6.60 37.32 0.25 0.98 16 12 O -0.38 -6.52 9.00 -35.23 -0.32 -6.83 16 13 C 0.10 1.64 0.68 -90.34 -0.06 1.58 16 14 C -0.11 -1.76 5.14 -26.47 -0.14 -1.89 16 15 C 0.12 1.65 6.19 -3.71 -0.02 1.62 16 16 N -0.60 -7.73 2.97 -172.76 -0.51 -8.25 16 17 C 0.51 6.62 7.69 -10.99 -0.08 6.54 16 18 O -0.54 -9.01 15.45 5.55 0.09 -8.92 16 19 C -0.06 -0.58 4.63 -29.04 -0.13 -0.72 16 20 C -0.18 -1.88 4.82 -104.42 -0.50 -2.38 16 21 C 0.00 0.04 12.16 -17.06 -0.21 -0.16 16 22 N -0.37 -4.65 12.07 30.36 0.37 -4.28 16 23 O 0.10 1.10 11.20 17.17 0.19 1.29 16 24 C -0.04 -0.42 12.26 29.74 0.36 -0.05 16 25 C 0.11 1.27 6.11 -3.70 -0.02 1.24 16 26 C -0.15 -2.23 4.33 -26.63 -0.12 -2.34 16 27 C 0.16 3.49 4.09 -3.55 -0.01 3.47 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.69 6.29 -51.93 -0.33 0.36 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 36 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 37 H 0.11 0.73 7.94 -51.93 -0.41 0.32 16 38 H 0.11 0.78 7.69 -51.93 -0.40 0.38 16 39 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.22 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 42 H 0.07 0.84 7.83 -51.93 -0.41 0.44 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 2.28 6.15 -51.93 -0.32 1.96 16 LS Contribution 363.27 15.07 5.47 5.47 Total: -1.00 -31.92 363.27 -7.11 -39.03 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.61 Total: 2.06 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.95 Total: 3.38 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.03 Total: -50.94 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.04 Total: -14.47 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.92 -7.11 -39.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949447525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.606 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds