Wall clock time and date at job start Tue Mar 31 2020 19:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48501 * 109.47616 * 240.00107 * 3 2 1 5 5 H 1.48503 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47204 * 120.00256 * 3 2 1 7 7 C 1.38810 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00231 * 163.55035 * 7 2 1 9 9 N 1.36938 * 120.00249 * 343.55170 * 7 2 1 10 10 C 1.47152 * 120.98976 * 153.35144 * 9 7 2 11 11 C 1.53305 * 108.37027 * 129.39057 * 10 9 7 12 12 O 1.42965 * 109.22704 * 52.35202 * 11 10 9 13 13 C 1.42902 * 114.20818 * 297.50306 * 12 11 10 14 14 C 1.53304 * 109.51837 * 182.16190 * 13 12 11 15 15 C 1.53198 * 109.18411 * 59.14492 * 14 13 12 16 16 N 1.46926 * 108.89066 * 54.51836 * 15 14 13 17 17 C 1.34774 * 120.64423 * 126.23745 * 16 15 14 18 18 O 1.21284 * 119.99435 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00426 * 180.02562 * 17 16 15 20 20 C 1.50700 * 109.47167 * 180.02562 * 19 17 16 21 21 C 1.41382 * 128.00913 * 89.99794 * 20 19 17 22 22 N 1.30178 * 106.39404 * 179.97438 * 21 20 19 23 23 O 1.20924 * 111.60597 * 0.02562 * 22 21 20 24 24 C 1.34044 * 111.56465 * 359.76313 * 23 22 21 25 25 C 1.46938 * 118.72081 * 306.25789 * 16 15 14 26 26 C 1.52987 * 109.55818 * 302.53222 * 13 12 11 27 27 C 1.47155 * 120.98247 * 333.33541 * 9 7 2 28 28 H 0.96999 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.68382 * 249.10541 * 10 9 7 30 30 H 1.08999 * 109.68425 * 9.66978 * 10 9 7 31 31 H 1.09000 * 109.50899 * 172.27707 * 11 10 9 32 32 H 1.09003 * 109.50904 * 292.42628 * 11 10 9 33 33 H 1.08994 * 109.68173 * 299.17006 * 14 13 12 34 34 H 1.08998 * 109.46694 * 178.98821 * 14 13 12 35 35 H 1.09000 * 109.58561 * 294.66421 * 15 14 13 36 36 H 1.08998 * 109.58753 * 174.37638 * 15 14 13 37 37 H 1.09005 * 109.47311 * 299.99718 * 19 17 16 38 38 H 1.09000 * 109.47379 * 59.99746 * 19 17 16 39 39 H 1.07996 * 126.80281 * 359.97438 * 21 20 19 40 40 H 1.08005 * 126.77448 * 180.28545 * 24 23 22 41 41 H 1.08994 * 109.59105 * 173.45756 * 25 16 15 42 42 H 1.08999 * 109.58681 * 293.74280 * 25 16 15 43 43 H 1.08993 * 109.49041 * 180.99848 * 26 13 12 44 44 H 1.08993 * 109.51591 * 60.93341 * 26 13 12 45 45 H 1.08998 * 109.68334 * 110.76278 * 27 9 7 46 46 H 1.09006 * 109.67804 * 350.21743 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0572 -1.2211 -0.2654 9 7 1.3677 -2.3640 0.3347 10 6 1.8299 -3.6618 -0.1823 11 6 1.9764 -4.6280 0.9988 12 8 0.7599 -4.6415 1.7497 13 6 0.4183 -3.3830 2.3344 14 6 -0.8682 -3.5318 3.1548 15 6 -0.6498 -4.5833 4.2473 16 7 0.5323 -4.2109 5.0364 17 6 0.4564 -4.1021 6.3776 18 8 -0.5951 -4.3118 6.9445 19 6 1.6777 -3.7186 7.1728 20 6 1.3277 -3.6676 8.6377 21 6 1.3967 -4.7138 9.5862 22 7 0.9994 -4.2097 10.7188 23 8 0.7050 -3.0421 10.6076 24 6 0.8788 -2.6076 9.3516 25 6 1.7987 -3.9590 4.3352 26 6 1.5572 -2.9137 3.2415 27 6 0.1947 -2.3517 1.2231 28 1 -0.4850 0.8400 0.0004 29 1 1.1009 -4.0556 -0.8905 30 1 2.7933 -3.5379 -0.6770 31 1 2.1848 -5.6306 0.6253 32 1 2.7955 -4.2995 1.6385 33 1 -1.6840 -3.8472 2.5044 34 1 -1.1182 -2.5759 3.6149 35 1 -0.4903 -5.5591 3.7886 36 1 -1.5246 -4.6232 4.8962 37 1 2.4625 -4.4580 7.0127 38 1 2.0297 -2.7392 6.8487 39 1 1.7157 -5.7299 9.4067 40 1 0.6959 -1.6096 8.9815 41 1 2.5394 -3.5843 5.0416 42 1 2.1580 -4.8847 3.8858 43 1 1.2881 -1.9625 3.7006 44 1 2.4649 -2.7887 2.6513 45 1 -0.6986 -2.6118 0.6553 46 1 0.0761 -1.3604 1.6609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949447525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:01 Heat of formation + Delta-G solvation = -2.691359 kcal Electronic energy + Delta-G solvation = -30223.315834 eV Core-core repulsion = 26116.745394 eV Total energy + Delta-G solvation = -4106.570440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.85820 -41.57512 -40.23449 -37.42475 -36.12757 -35.56724 -33.91292 -33.16277 -33.05076 -32.08585 -30.30525 -29.31747 -28.14258 -25.32740 -24.76780 -24.22831 -23.88127 -23.00625 -22.06161 -20.67387 -19.83152 -18.77506 -18.74832 -18.61572 -18.07912 -17.16824 -16.85444 -16.66231 -16.24149 -16.06956 -15.77565 -15.72509 -15.35381 -15.25021 -14.73259 -14.59152 -14.55251 -14.11366 -14.05171 -13.65720 -13.36078 -13.26092 -13.15974 -12.93738 -12.72953 -12.67615 -12.38702 -12.24079 -12.17017 -12.12257 -12.09258 -11.73804 -11.60613 -11.34193 -10.96707 -10.87558 -10.66890 -10.40764 -10.26712 -9.60337 -8.66120 -7.86181 -5.33490 0.60575 1.27415 1.49012 1.49822 1.57001 1.64527 2.10986 2.42915 2.50226 2.94755 3.27482 3.38542 3.54569 3.62902 3.79377 3.83732 3.96775 4.06055 4.07763 4.14563 4.23537 4.39207 4.41644 4.47513 4.55516 4.59150 4.63387 4.71163 4.76629 4.82059 4.83525 4.88233 4.91187 5.01701 5.03450 5.10128 5.14685 5.23783 5.33567 5.37930 5.54409 5.61771 5.66300 6.33468 6.47460 6.50569 7.11063 7.18912 7.31859 7.80765 8.34828 9.18651 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015002 B = 0.003130 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.986719 B = 8943.813541 C = 9943.088267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.278 1.278 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.073 0.927 9 N -0.608 5.608 10 C 0.102 3.898 11 C 0.054 3.946 12 O -0.384 6.384 13 C 0.107 3.893 14 C -0.110 4.110 15 C 0.128 3.872 16 N -0.604 5.604 17 C 0.513 3.487 18 O -0.585 6.585 19 C -0.056 4.056 20 C -0.197 4.197 21 C -0.001 4.001 22 N -0.402 5.402 23 O 0.080 5.920 24 C -0.040 4.040 25 C 0.117 3.883 26 C -0.141 4.141 27 C 0.168 3.832 28 H 0.249 0.751 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.206 0.794 40 H 0.246 0.754 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.081 0.919 45 H -0.016 1.016 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -8.474 13.255 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.387 4.387 8 H 0.091 0.909 9 N -0.332 5.332 10 C -0.024 4.024 11 C -0.024 4.024 12 O -0.303 6.303 13 C 0.066 3.934 14 C -0.149 4.149 15 C 0.005 3.995 16 N -0.336 5.336 17 C 0.303 3.697 18 O -0.465 6.465 19 C -0.096 4.096 20 C -0.201 4.201 21 C -0.180 4.180 22 N -0.108 5.108 23 O 0.019 5.981 24 C -0.122 4.122 25 C -0.004 4.004 26 C -0.179 4.179 27 C 0.042 3.958 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.223 0.777 40 H 0.262 0.738 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.003 0.997 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.534 -9.090 14.795 18.553 hybrid contribution -0.047 1.488 -1.767 2.311 sum 6.487 -7.602 13.028 16.419 Atomic orbital electron populations 1.70188 1.06782 1.25846 1.55590 1.25780 0.95920 1.01471 1.01339 0.85378 0.77517 0.79238 0.78541 1.20405 1.22634 1.19661 1.19478 0.92755 0.85367 1.41102 0.90889 1.44314 1.33483 1.02157 1.53290 1.21814 0.98187 0.86869 0.95495 1.23065 0.86818 1.00099 0.92414 1.87802 1.42546 1.31257 1.68701 1.21952 0.94655 0.84539 0.92267 1.21818 0.96434 0.99930 0.96725 1.21336 0.88651 0.97553 0.91951 1.48191 1.11855 1.67844 1.05757 1.21095 0.90649 0.76153 0.81824 1.90694 1.32978 1.52418 1.70442 1.20031 0.95822 1.07248 0.86502 1.20999 1.08188 0.93315 0.97614 1.25353 1.01397 1.03046 0.88208 1.73840 1.18087 0.93538 1.25383 1.84764 1.63444 1.19679 1.30199 1.26476 0.99625 1.02934 0.83124 1.21882 0.84728 0.99159 0.94674 1.22207 0.99804 0.98860 0.97041 1.21146 0.87458 0.97462 0.89756 0.94234 0.97517 0.91177 0.86930 0.91800 0.90835 0.91253 0.90490 0.90288 0.84392 0.84659 0.77708 0.73766 0.86314 0.89944 0.91995 0.90024 0.99749 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.70 11.14 21.65 0.24 -53.46 16 2 C -0.05 -2.64 4.95 84.86 0.42 -2.22 16 3 Si 0.97 42.35 29.58 68.60 2.03 44.38 16 4 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.26 -13.11 9.65 84.03 0.81 -12.30 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -28.39 2.55 -697.59 -1.78 -30.17 16 10 C 0.10 3.87 6.74 86.36 0.58 4.45 16 11 C 0.05 1.55 6.60 72.08 0.48 2.03 16 12 O -0.38 -12.40 9.00 -148.98 -1.34 -13.74 16 13 C 0.11 3.60 0.68 -10.61 -0.01 3.59 16 14 C -0.11 -3.40 5.14 30.76 0.16 -3.24 16 15 C 0.13 3.39 6.19 86.36 0.53 3.92 16 16 N -0.60 -13.72 2.97 -818.86 -2.43 -16.15 16 17 C 0.51 11.70 7.69 87.66 0.67 12.38 16 18 O -0.58 -18.53 15.45 -3.04 -0.05 -18.58 16 19 C -0.06 -0.77 4.63 29.10 0.13 -0.63 16 20 C -0.20 -3.49 4.82 -19.73 -0.10 -3.59 16 21 C 0.00 -0.03 12.16 85.71 1.04 1.01 16 22 N -0.40 -9.79 12.07 -59.25 -0.72 -10.51 16 23 O 0.08 1.77 11.20 71.60 0.80 2.57 16 24 C -0.04 -0.68 12.26 67.18 0.82 0.15 16 25 C 0.12 2.23 6.11 86.36 0.53 2.76 16 26 C -0.14 -3.94 4.33 30.66 0.13 -3.81 16 27 C 0.17 7.66 4.09 86.34 0.35 8.02 16 28 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.07 2.49 7.96 -2.39 -0.02 2.47 16 31 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.06 1.67 6.29 -2.39 -0.02 1.65 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 2.00 7.82 -2.39 -0.02 1.98 16 36 H 0.08 2.24 7.00 -2.39 -0.02 2.22 16 37 H 0.14 1.09 7.94 -2.38 -0.02 1.07 16 38 H 0.14 1.20 7.69 -2.39 -0.02 1.18 16 39 H 0.21 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.25 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.12 1.36 5.93 -2.39 -0.01 1.35 16 42 H 0.08 1.49 7.83 -2.39 -0.02 1.48 16 43 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 2.48 6.16 -2.39 -0.01 2.47 16 45 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.06 3.18 6.15 -2.38 -0.01 3.17 16 Total: -1.00 -72.79 363.27 4.32 -68.47 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.99 Total: 14.66 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.57 Total: 12.53 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -4.69 Total: -110.29 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.59 Total: -29.75 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -72.79 4.32 -68.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949447525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.778 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds