Wall clock time and date at job start Tue Mar 31 2020 18:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47224 * 239.99585 * 3 2 1 5 5 H 1.48494 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47064 * 120.00071 * 3 2 1 7 7 C 1.38808 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99743 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00617 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64588 * 0.03915 * 9 7 2 11 11 C 1.54370 * 107.28984 * 181.05681 * 10 9 7 12 12 H 1.08997 * 110.70719 * 263.79644 * 11 10 9 13 13 O 1.42894 * 110.75329 * 140.50411 * 11 10 9 14 14 C 1.55161 * 102.92058 * 22.13917 * 11 10 9 15 15 H 1.08998 * 111.00277 * 82.63557 * 14 11 10 16 16 C 1.52990 * 111.00496 * 206.45256 * 14 11 10 17 17 N 1.46497 * 109.47443 * 181.81852 * 16 14 11 18 18 C 1.34776 * 120.00385 * 180.02562 * 17 16 14 19 19 O 1.21695 * 119.99757 * 359.97438 * 18 17 16 20 20 C 1.46678 * 120.00229 * 180.02562 * 18 17 16 21 21 C 1.38157 * 126.19134 * 180.02562 * 20 18 17 22 22 C 1.38948 * 106.94838 * 179.97438 * 21 20 18 23 23 C 1.36366 * 107.99689 * 0.02562 * 22 21 20 24 24 N 1.34653 * 108.83574 * 359.96846 * 23 22 21 25 25 H 0.97000 * 125.68871 * 180.02562 * 24 23 22 26 26 C 1.51089 * 122.51273 * 179.79818 * 23 22 21 27 27 C 1.53540 * 107.77005 * 344.17252 * 26 23 22 28 28 O 1.42987 * 109.69330 * 47.99965 * 27 26 23 29 29 C 1.43425 * 114.34212 * 288.98441 * 28 27 26 30 30 C 1.47420 * 125.65239 * 179.97438 * 9 7 2 31 31 H 0.97000 * 120.00101 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.87809 * 300.44340 * 10 9 7 33 33 H 1.09001 * 109.88236 * 61.44876 * 10 9 7 34 34 H 0.96707 * 114.00330 * 66.48541 * 13 11 10 35 35 H 1.09006 * 109.47195 * 61.81705 * 16 14 11 36 36 H 1.09003 * 109.47252 * 301.82014 * 16 14 11 37 37 H 0.97004 * 119.99850 * 0.02562 * 17 16 14 38 38 H 1.07999 * 126.52561 * 359.97438 * 21 20 18 39 39 H 1.09002 * 109.81004 * 224.58617 * 26 23 22 40 40 H 1.09001 * 109.81108 * 103.75591 * 26 23 22 41 41 H 1.08995 * 109.43549 * 168.07303 * 27 26 23 42 42 H 1.08998 * 109.43620 * 287.93543 * 27 26 23 43 43 H 1.09003 * 109.76320 * 170.34004 * 29 28 27 44 44 H 1.08996 * 109.75700 * 291.05380 * 29 28 27 45 45 H 1.08998 * 110.36894 * 37.07044 * 30 9 7 46 46 H 1.09001 * 110.37017 * 274.74397 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0008 11 6 -0.4491 -4.0445 0.0269 12 1 -0.6320 -4.4188 -0.9803 13 8 -1.5636 -4.3162 0.8790 14 6 0.8512 -4.6560 0.6122 15 1 0.8556 -4.5963 1.7005 16 6 1.0367 -6.1007 0.1443 17 7 2.2486 -6.6584 0.7497 18 6 2.6150 -7.9268 0.4787 19 8 1.9389 -8.6089 -0.2687 20 6 3.8281 -8.4853 1.0853 21 6 4.3207 -9.7622 0.8971 22 6 5.4807 -9.8647 1.6550 23 6 5.6788 -8.6719 2.2856 24 7 4.6836 -7.8305 1.9465 25 1 4.5851 -6.9166 2.2564 26 6 6.8526 -8.4238 3.2039 27 6 7.4555 -9.7869 3.5725 28 8 7.6315 -10.5715 2.3901 29 6 6.4093 -11.0434 1.8065 30 6 1.9334 -3.7311 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5584 -2.0519 0.8822 33 1 -0.5538 -2.0822 -0.9019 34 1 -2.4014 -3.9552 0.5580 35 1 1.1302 -6.1219 -0.9415 36 1 0.1736 -6.6941 0.4462 37 1 2.7873 -6.1148 1.3457 38 1 3.8867 -10.5339 0.2786 39 1 6.5146 -7.9133 4.1058 40 1 7.5992 -7.8156 2.6931 41 1 8.4210 -9.6377 4.0558 42 1 6.7849 -10.3071 4.2564 43 1 6.6125 -11.4807 0.8289 44 1 5.9548 -11.7906 2.4570 45 1 2.8326 -3.7406 0.6165 46 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958130174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:49 Heat of formation + Delta-G solvation = -60.188762 kcal Electronic energy + Delta-G solvation = -28540.762243 eV Core-core repulsion = 24431.698528 eV Total energy + Delta-G solvation = -4109.063715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93332 -39.53662 -38.39739 -38.00936 -35.24957 -34.74243 -32.79185 -32.44244 -31.74732 -29.98307 -29.12706 -27.67890 -26.17375 -25.18074 -24.12225 -23.36511 -21.99751 -20.62239 -20.28829 -19.93421 -19.32887 -18.57311 -17.02103 -16.88081 -16.62374 -16.20534 -15.87778 -15.73877 -15.33368 -15.04067 -14.61525 -14.53741 -14.26969 -13.98141 -13.82295 -13.66347 -13.39853 -13.15841 -12.82378 -12.72508 -12.51595 -12.41495 -12.06931 -11.75391 -11.55159 -11.30610 -11.26528 -11.04592 -10.86410 -10.68824 -10.28828 -10.17806 -10.13123 -9.89104 -9.87030 -9.28838 -9.16386 -9.07930 -8.72650 -8.22916 -6.98133 -5.82671 -3.17714 1.24914 2.30400 2.67862 3.07387 3.29122 3.32992 3.37369 3.38881 3.50296 4.24442 4.37006 4.46405 4.61493 4.67401 4.76163 4.78349 4.89634 4.96151 5.10566 5.12839 5.16628 5.24824 5.36314 5.42925 5.43284 5.51264 5.59547 5.69047 5.79251 5.85520 5.95056 5.96139 6.12517 6.25069 6.29746 6.40839 6.46696 6.60074 6.72654 6.80339 7.04827 7.32210 7.41378 7.43092 7.67313 8.10549 8.11846 8.13426 9.08406 9.68944 10.32984 11.28780 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.002425 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.390005 B =11545.774703 C =13090.646515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.234 4.234 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.058 0.942 13 O -0.566 6.566 14 C -0.108 4.108 15 H 0.088 0.912 16 C 0.134 3.866 17 N -0.724 5.724 18 C 0.588 3.412 19 O -0.531 6.531 20 C -0.054 4.054 21 C -0.087 4.087 22 C -0.223 4.223 23 C 0.056 3.944 24 N -0.522 5.522 25 H 0.418 0.582 26 C -0.089 4.089 27 C 0.069 3.931 28 O -0.380 6.380 29 C 0.137 3.863 30 C 0.142 3.858 31 H 0.254 0.746 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.377 0.623 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.395 0.605 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.098 -18.825 6.829 22.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.076 0.924 13 O -0.371 6.371 14 C -0.128 4.128 15 H 0.107 0.893 16 C 0.011 3.989 17 N -0.375 5.375 18 C 0.375 3.625 19 O -0.408 6.408 20 C -0.166 4.166 21 C -0.113 4.113 22 C -0.230 4.230 23 C -0.064 4.064 24 N -0.117 5.117 25 H 0.255 0.745 26 C -0.127 4.127 27 C -0.008 4.008 28 O -0.299 6.299 29 C 0.060 3.940 30 C 0.015 3.985 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.224 0.776 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.228 0.772 38 H 0.168 0.832 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 10.088 -19.231 6.565 22.687 hybrid contribution -0.167 2.241 0.155 2.252 sum 9.921 -16.991 6.720 20.791 Atomic orbital electron populations 1.69926 1.04949 1.25376 1.56640 1.24823 0.95767 0.97816 1.01888 0.86163 0.78463 0.82964 0.77937 1.21070 1.21497 1.21107 1.19004 0.90402 0.82244 1.44503 0.90354 1.44293 1.01336 0.99880 1.87408 1.21845 0.85141 0.88509 1.01887 1.23113 0.85045 0.97878 0.91656 0.92429 1.86417 1.18881 1.80135 1.51700 1.22619 0.96326 0.92294 1.01573 0.89326 1.21414 0.86088 0.93347 0.98044 1.45926 1.28347 1.13274 1.49937 1.16986 0.83137 0.81462 0.80872 1.90842 1.53504 1.59683 1.36785 1.20533 0.96755 0.94995 1.04333 1.20809 0.95101 0.94890 1.00521 1.19945 1.00518 0.96873 1.05646 1.20253 0.92808 0.91011 1.02343 1.41629 1.19835 1.13726 1.36522 0.74467 1.21043 0.93654 1.00126 0.97853 1.22535 1.01531 0.89414 0.87349 1.88022 1.29925 1.69802 1.42112 1.21045 0.82461 0.91757 0.98712 1.21611 0.93908 0.85894 0.97039 0.93546 0.92407 0.93541 0.77630 0.91068 0.90895 0.77206 0.83153 0.89436 0.89114 0.87981 0.92490 0.87911 0.92004 0.94237 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.31 55.49 0.57 -25.82 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.79 3.39 -170.03 -0.58 -15.37 16 10 C 0.15 3.53 5.16 -3.04 -0.02 3.52 16 11 C 0.08 1.52 3.80 -24.87 -0.09 1.42 16 12 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 13 O -0.57 -9.63 13.39 -35.23 -0.47 -10.10 16 14 C -0.11 -1.82 2.79 -88.46 -0.25 -2.06 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.13 1.98 5.12 -4.05 -0.02 1.96 16 17 N -0.72 -9.39 5.44 -61.62 -0.34 -9.73 16 18 C 0.59 8.44 7.79 -12.85 -0.10 8.34 16 19 O -0.53 -9.42 16.88 5.19 0.09 -9.33 16 20 C -0.05 -0.66 7.07 -81.74 -0.58 -1.23 16 21 C -0.09 -1.02 10.63 -39.35 -0.42 -1.44 16 22 C -0.22 -2.30 6.02 -104.98 -0.63 -2.93 16 23 C 0.06 0.52 7.14 -81.84 -0.58 -0.06 16 24 N -0.52 -4.95 5.97 -5.43 -0.03 -4.98 16 25 H 0.42 2.94 8.19 -40.82 -0.33 2.61 16 26 C -0.09 -0.57 6.56 -27.41 -0.18 -0.75 16 27 C 0.07 0.43 6.78 37.44 0.25 0.69 16 28 O -0.38 -3.43 10.74 -35.23 -0.38 -3.81 16 29 C 0.14 1.14 7.25 36.06 0.26 1.41 16 30 C 0.14 2.73 6.56 -2.52 -0.02 2.72 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.52 7.29 -51.93 -0.38 1.14 16 33 H 0.05 1.19 7.50 -51.93 -0.39 0.80 16 34 H 0.38 4.95 9.12 45.56 0.42 5.36 16 35 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.39 4.24 7.56 -40.82 -0.31 3.93 16 38 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -34.64 376.55 -9.12 -43.76 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.01 Total: 8.31 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.62 Total: 4.84 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.37 Total: -55.90 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.76 Total: -23.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.64 -9.12 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958130174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.428 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds