Wall clock time and date at job start Tue Mar 31 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48497 * 109.47224 * 239.99585 * 3 2 1 5 5 H 1.48494 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47064 * 120.00071 * 3 2 1 7 7 C 1.38808 * 119.99683 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99743 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00617 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64588 * 0.03915 * 9 7 2 11 11 C 1.54370 * 107.28984 * 181.05681 * 10 9 7 12 12 H 1.08997 * 110.70719 * 263.79644 * 11 10 9 13 13 O 1.42894 * 110.75329 * 140.50411 * 11 10 9 14 14 C 1.55161 * 102.92058 * 22.13917 * 11 10 9 15 15 H 1.08998 * 111.00277 * 82.63557 * 14 11 10 16 16 C 1.52990 * 111.00496 * 206.45256 * 14 11 10 17 17 N 1.46497 * 109.47443 * 181.81852 * 16 14 11 18 18 C 1.34776 * 120.00385 * 180.02562 * 17 16 14 19 19 O 1.21695 * 119.99757 * 359.97438 * 18 17 16 20 20 C 1.46678 * 120.00229 * 180.02562 * 18 17 16 21 21 C 1.38157 * 126.19134 * 180.02562 * 20 18 17 22 22 C 1.38948 * 106.94838 * 179.97438 * 21 20 18 23 23 C 1.36366 * 107.99689 * 0.02562 * 22 21 20 24 24 N 1.34653 * 108.83574 * 359.96846 * 23 22 21 25 25 H 0.97000 * 125.68871 * 180.02562 * 24 23 22 26 26 C 1.51089 * 122.51273 * 179.79818 * 23 22 21 27 27 C 1.53540 * 107.77005 * 344.17252 * 26 23 22 28 28 O 1.42987 * 109.69330 * 47.99965 * 27 26 23 29 29 C 1.43425 * 114.34212 * 288.98441 * 28 27 26 30 30 C 1.47420 * 125.65239 * 179.97438 * 9 7 2 31 31 H 0.97000 * 120.00101 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.87809 * 300.44340 * 10 9 7 33 33 H 1.09001 * 109.88236 * 61.44876 * 10 9 7 34 34 H 0.96707 * 114.00330 * 66.48541 * 13 11 10 35 35 H 1.09006 * 109.47195 * 61.81705 * 16 14 11 36 36 H 1.09003 * 109.47252 * 301.82014 * 16 14 11 37 37 H 0.97004 * 119.99850 * 0.02562 * 17 16 14 38 38 H 1.07999 * 126.52561 * 359.97438 * 21 20 18 39 39 H 1.09002 * 109.81004 * 224.58617 * 26 23 22 40 40 H 1.09001 * 109.81108 * 103.75591 * 26 23 22 41 41 H 1.08995 * 109.43549 * 168.07303 * 27 26 23 42 42 H 1.08998 * 109.43620 * 287.93543 * 27 26 23 43 43 H 1.09003 * 109.76320 * 170.34004 * 29 28 27 44 44 H 1.08996 * 109.75700 * 291.05380 * 29 28 27 45 45 H 1.08998 * 110.36894 * 37.07044 * 30 9 7 46 46 H 1.09001 * 110.37017 * 274.74397 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0008 11 6 -0.4491 -4.0445 0.0269 12 1 -0.6320 -4.4188 -0.9803 13 8 -1.5636 -4.3162 0.8790 14 6 0.8512 -4.6560 0.6122 15 1 0.8556 -4.5963 1.7005 16 6 1.0367 -6.1007 0.1443 17 7 2.2486 -6.6584 0.7497 18 6 2.6150 -7.9268 0.4787 19 8 1.9389 -8.6089 -0.2687 20 6 3.8281 -8.4853 1.0853 21 6 4.3207 -9.7622 0.8971 22 6 5.4807 -9.8647 1.6550 23 6 5.6788 -8.6719 2.2856 24 7 4.6836 -7.8305 1.9465 25 1 4.5851 -6.9166 2.2564 26 6 6.8526 -8.4238 3.2039 27 6 7.4555 -9.7869 3.5725 28 8 7.6315 -10.5715 2.3901 29 6 6.4093 -11.0434 1.8065 30 6 1.9334 -3.7311 0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5584 -2.0519 0.8822 33 1 -0.5538 -2.0822 -0.9019 34 1 -2.4014 -3.9552 0.5580 35 1 1.1302 -6.1219 -0.9415 36 1 0.1736 -6.6941 0.4462 37 1 2.7873 -6.1148 1.3457 38 1 3.8867 -10.5339 0.2786 39 1 6.5146 -7.9133 4.1058 40 1 7.5992 -7.8156 2.6931 41 1 8.4210 -9.6377 4.0558 42 1 6.7849 -10.3071 4.2564 43 1 6.6125 -11.4807 0.8289 44 1 5.9548 -11.7906 2.4570 45 1 2.8326 -3.7406 0.6165 46 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958130174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:48 Heat of formation + Delta-G solvation = -87.915777 kcal Electronic energy + Delta-G solvation = -28541.964576 eV Core-core repulsion = 24431.698528 eV Total energy + Delta-G solvation = -4110.266048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72074 -40.69192 -39.72913 -38.81643 -36.68504 -36.20047 -34.11296 -33.41789 -32.64126 -31.47775 -30.03320 -29.30372 -27.51333 -26.41453 -25.13767 -24.39929 -22.95678 -22.19433 -21.65213 -21.09028 -20.04358 -19.59339 -18.85340 -18.26523 -17.36963 -17.19327 -16.95392 -16.71521 -16.66266 -16.15934 -15.85650 -15.76612 -15.30011 -15.25145 -14.80262 -14.64827 -14.49434 -14.43589 -14.10489 -13.99595 -13.71764 -13.46942 -13.24978 -13.13353 -13.02410 -12.70949 -12.49770 -12.37125 -12.36692 -11.96626 -11.83226 -11.76035 -11.60496 -11.26388 -10.85401 -10.76138 -10.74996 -10.29803 -9.89722 -9.02561 -8.97246 -7.89133 -5.26041 0.34035 1.44817 1.47591 1.51395 1.53920 1.88421 2.04116 2.26957 2.45652 2.97462 3.19768 3.31240 3.52041 3.59897 3.67369 3.80801 3.84858 3.97612 4.05141 4.10387 4.19853 4.35108 4.36395 4.40578 4.55016 4.57750 4.65297 4.68881 4.78550 4.81648 4.82665 4.89506 4.94817 5.01199 5.10087 5.17844 5.29549 5.38690 5.45339 5.65782 5.68208 5.77421 6.13312 6.23917 6.30789 6.46995 6.85726 7.03092 7.03887 7.70674 8.33970 9.20757 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.002425 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.390005 B =11545.774703 C =13090.646515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.087 0.913 9 N -0.624 5.624 10 C 0.161 3.839 11 C 0.096 3.904 12 H 0.075 0.925 13 O -0.569 6.569 14 C -0.089 4.089 15 H 0.088 0.912 16 C 0.148 3.852 17 N -0.715 5.715 18 C 0.590 3.410 19 O -0.572 6.572 20 C -0.078 4.078 21 C -0.096 4.096 22 C -0.239 4.239 23 C 0.064 3.936 24 N -0.512 5.512 25 H 0.429 0.571 26 C -0.087 4.087 27 C 0.062 3.938 28 O -0.398 6.398 29 C 0.137 3.863 30 C 0.140 3.860 31 H 0.247 0.753 32 H 0.020 0.980 33 H 0.013 0.987 34 H 0.394 0.606 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 -19.589 8.096 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.035 3.965 11 C 0.036 3.964 12 H 0.093 0.907 13 O -0.376 6.376 14 C -0.109 4.109 15 H 0.106 0.894 16 C 0.024 3.976 17 N -0.366 5.366 18 C 0.379 3.621 19 O -0.452 6.452 20 C -0.190 4.190 21 C -0.123 4.123 22 C -0.245 4.245 23 C -0.057 4.057 24 N -0.108 5.108 25 H 0.269 0.731 26 C -0.125 4.125 27 C -0.014 4.014 28 O -0.317 6.317 29 C 0.060 3.940 30 C 0.015 3.985 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.243 0.757 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.242 0.758 38 H 0.165 0.835 39 H 0.130 0.870 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 12.182 -19.994 7.855 24.695 hybrid contribution -0.757 2.435 -0.201 2.558 sum 11.425 -17.559 7.654 22.303 Atomic orbital electron populations 1.70151 1.06346 1.25464 1.58051 1.25679 0.96640 1.01166 1.02432 0.85137 0.77132 0.78664 0.78306 1.20302 1.22241 1.20053 1.19444 0.91133 0.83454 1.43331 0.89491 1.44593 1.02071 1.01242 1.87252 1.21608 0.84688 0.91730 0.98489 1.22885 0.86227 0.94239 0.93046 0.90678 1.86386 1.19505 1.79939 1.51795 1.22411 0.94440 0.92818 1.01199 0.89390 1.21150 0.86861 0.91768 0.97848 1.45755 1.27869 1.13127 1.49826 1.17205 0.83343 0.81270 0.80245 1.90814 1.54979 1.60672 1.38734 1.20205 0.97050 0.95570 1.06223 1.20982 0.95762 0.94879 1.00673 1.20230 1.00412 0.98174 1.05665 1.20838 0.92853 0.90482 1.01528 1.41579 1.19250 1.14232 1.35730 0.73119 1.21206 0.92408 1.00648 0.98197 1.22785 1.03035 0.88984 0.86644 1.88002 1.30175 1.70328 1.43176 1.21114 0.82136 0.91304 0.99419 1.21781 0.95091 0.83909 0.97755 0.94341 0.96169 0.96883 0.75678 0.91380 0.90991 0.75757 0.83456 0.86995 0.88434 0.85752 0.91796 0.87468 0.90793 0.92479 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.07 10.31 21.65 0.22 -55.85 16 2 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 3 Si 0.98 44.54 29.55 68.60 2.03 46.57 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.24 -13.24 10.28 84.03 0.86 -12.37 16 8 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -30.73 3.39 -691.84 -2.35 -33.08 16 10 C 0.16 7.66 5.16 86.74 0.45 8.11 16 11 C 0.10 3.45 3.80 31.80 0.12 3.57 16 12 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16 13 O -0.57 -18.74 13.39 -148.98 -1.99 -20.73 16 14 C -0.09 -2.85 2.79 -9.39 -0.03 -2.88 16 15 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 16 C 0.15 4.13 5.12 86.38 0.44 4.57 16 17 N -0.72 -17.43 5.44 -467.09 -2.54 -19.98 16 18 C 0.59 16.51 7.79 86.45 0.67 17.19 16 19 O -0.57 -20.28 16.88 -4.33 -0.07 -20.35 16 20 C -0.08 -1.83 7.07 40.37 0.29 -1.55 16 21 C -0.10 -2.21 10.63 22.42 0.24 -1.98 16 22 C -0.24 -4.57 6.02 -20.09 -0.12 -4.69 16 23 C 0.06 1.05 7.14 41.81 0.30 1.35 16 24 N -0.51 -8.66 5.97 -171.09 -1.02 -9.68 16 25 H 0.43 4.96 8.19 -92.71 -0.76 4.20 16 26 C -0.09 -0.83 6.56 30.15 0.20 -0.63 16 27 C 0.06 0.60 6.78 72.16 0.49 1.08 16 28 O -0.40 -6.33 10.74 -148.98 -1.60 -7.93 16 29 C 0.14 2.08 7.25 71.27 0.52 2.59 16 30 C 0.14 5.19 6.56 86.87 0.57 5.76 16 31 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 32 H 0.02 1.10 7.29 -2.39 -0.02 1.08 16 33 H 0.01 0.69 7.50 -2.39 -0.02 0.68 16 34 H 0.39 9.99 9.12 -74.05 -0.68 9.32 16 35 H 0.07 1.99 8.04 -2.38 -0.02 1.97 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.41 7.87 7.56 -92.71 -0.70 7.17 16 38 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.53 8.09 -2.39 -0.02 0.51 16 43 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.03 1.05 7.96 -2.39 -0.02 1.03 16 Total: -1.00 -76.01 376.55 -2.97 -78.98 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -1.10 Total: 25.11 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 5.46 Total: 16.93 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -5.69 Total: -118.59 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -3.67 Total: -49.01 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.01 -2.97 -78.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958130174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.932 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds