Wall clock time and date at job start Tue Mar 31 2020 18:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99564 * 2 1 4 4 H 1.48502 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47240 * 299.99616 * 3 2 1 6 6 H 1.48505 * 109.47038 * 60.00100 * 3 2 1 7 7 C 1.38810 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64533 * 0.05598 * 9 7 2 11 11 C 1.54912 * 104.83306 * 204.07767 * 10 9 7 12 12 H 1.08995 * 111.03828 * 204.90274 * 11 10 9 13 13 O 1.42903 * 110.99758 * 81.06681 * 11 10 9 14 14 C 1.55149 * 101.58182 * 322.99349 * 11 10 9 15 15 H 1.09002 * 110.72219 * 277.13706 * 14 11 10 16 16 C 1.53001 * 110.72077 * 153.85835 * 14 11 10 17 17 N 1.46504 * 109.47036 * 175.00109 * 16 14 11 18 18 C 1.34774 * 119.99981 * 180.02562 * 17 16 14 19 19 O 1.21699 * 120.00182 * 359.97438 * 18 17 16 20 20 C 1.46684 * 119.99960 * 180.02562 * 18 17 16 21 21 C 1.38158 * 126.18787 * 180.02562 * 20 18 17 22 22 C 1.38936 * 106.94737 * 179.97438 * 21 20 18 23 23 C 1.36271 * 108.02556 * 0.03573 * 22 21 20 24 24 N 1.34744 * 108.83303 * 359.69538 * 23 22 21 25 25 H 0.97000 * 125.71388 * 180.31679 * 24 23 22 26 26 C 1.51086 * 122.58583 * 179.88492 * 23 22 21 27 27 C 1.53547 * 107.71532 * 344.10611 * 26 23 22 28 28 O 1.42991 * 109.68743 * 48.02862 * 27 26 23 29 29 C 1.43419 * 114.33634 * 288.96417 * 28 27 26 30 30 C 1.47014 * 125.65028 * 179.97438 * 9 7 2 31 31 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.09009 * 110.36844 * 85.24387 * 10 9 7 33 33 H 1.09002 * 110.37005 * 322.91886 * 10 9 7 34 34 H 0.96700 * 114.00311 * 67.80834 * 13 11 10 35 35 H 1.08996 * 109.47758 * 294.99881 * 16 14 11 36 36 H 1.08998 * 109.46845 * 55.00181 * 16 14 11 37 37 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 38 38 H 1.08007 * 126.52745 * 0.02562 * 21 20 18 39 39 H 1.09000 * 109.81260 * 224.55399 * 26 23 22 40 40 H 1.09000 * 109.86068 * 103.68753 * 26 23 22 41 41 H 1.09003 * 109.43404 * 287.95820 * 27 26 23 42 42 H 1.09007 * 109.43356 * 168.09508 * 27 26 23 43 43 H 1.08996 * 109.77123 * 291.11989 * 29 28 27 44 44 H 1.09008 * 109.80438 * 170.37004 * 29 28 27 45 45 H 1.08999 * 109.88292 * 59.56690 * 30 9 7 46 46 H 1.09001 * 109.88362 * 298.40882 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1413 -2.5332 0.0011 11 6 -0.4016 -3.9321 0.6135 12 1 -1.3588 -4.3331 0.2804 13 8 -0.3371 -3.8865 2.0404 14 6 0.7786 -4.7524 0.0294 15 1 0.5465 -5.0985 -0.9778 16 6 1.1231 -5.9308 0.9425 17 7 2.1570 -6.7532 0.3093 18 6 2.6198 -7.8536 0.9349 19 8 2.1791 -8.1638 2.0261 20 6 3.6554 -8.6767 0.3012 21 6 4.2185 -9.8247 0.8244 22 6 5.1495 -10.2776 -0.1021 23 6 5.1451 -9.4178 -1.1592 24 7 4.2389 -8.4479 -0.9273 25 1 4.0330 -7.7111 -1.5236 26 6 6.0427 -9.6008 -2.3607 27 6 7.1431 -10.5995 -1.9741 28 8 6.5573 -11.7414 -1.3435 29 6 6.0423 -11.4912 -0.0286 30 6 1.9320 -3.7274 0.0017 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5267 -2.4874 -1.0175 33 1 -0.5994 -1.7586 0.6161 34 1 -1.0545 -3.3844 2.4507 35 1 1.4916 -5.5553 1.8970 36 1 0.2307 -6.5340 1.1094 37 1 2.5086 -6.5058 -0.5602 38 1 3.9798 -10.2832 1.7727 39 1 6.4906 -8.6460 -2.6361 40 1 5.4653 -9.9931 -3.1979 41 1 7.8401 -10.1223 -1.2852 42 1 7.6781 -10.9145 -2.8701 43 1 6.8657 -11.3018 0.6600 44 1 5.4669 -12.3519 0.3127 45 1 2.5585 -3.8506 0.8851 46 1 2.5284 -3.8644 -0.9003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958130175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:52 Heat of formation + Delta-G solvation = -56.360378 kcal Electronic energy + Delta-G solvation = -28653.090979 eV Core-core repulsion = 24544.193275 eV Total energy + Delta-G solvation = -4108.897703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.92225 -39.50546 -38.40692 -37.99681 -34.97789 -34.58805 -32.78778 -32.39170 -31.73066 -29.93625 -29.12067 -27.81517 -26.13278 -25.16003 -24.12346 -23.37296 -21.98381 -20.62806 -20.15195 -19.78090 -19.29776 -18.50613 -17.35845 -16.73813 -16.48140 -16.17916 -15.75145 -15.64106 -15.24330 -14.90772 -14.61543 -14.56723 -14.19900 -13.90579 -13.86983 -13.75416 -13.40507 -13.14304 -12.84660 -12.72934 -12.46708 -12.33571 -12.00297 -11.74907 -11.44754 -11.31336 -11.26580 -10.86993 -10.71870 -10.43779 -10.35205 -10.18024 -10.08844 -9.90832 -9.86951 -9.16241 -9.12923 -9.03129 -8.74044 -8.21944 -6.90521 -5.74691 -3.15016 1.26733 2.31659 2.68559 3.12960 3.32614 3.34323 3.40113 3.42376 3.50375 4.24438 4.40994 4.46467 4.62877 4.70090 4.76727 4.80665 4.91316 5.06379 5.13257 5.16995 5.24457 5.24750 5.32811 5.43042 5.45147 5.51344 5.56058 5.70839 5.83671 5.87004 6.00311 6.05816 6.27488 6.34583 6.38201 6.44502 6.55468 6.62164 6.77744 6.80385 7.05745 7.22066 7.47281 7.52019 7.69925 8.15319 8.18787 8.32560 9.12859 9.74162 10.37765 11.30263 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.002338 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.494934 B =11974.411460 C =13160.987745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.126 3.874 11 C 0.082 3.918 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.107 4.107 15 H 0.085 0.915 16 C 0.142 3.858 17 N -0.727 5.727 18 C 0.587 3.413 19 O -0.529 6.529 20 C -0.052 4.052 21 C -0.088 4.088 22 C -0.222 4.222 23 C 0.054 3.946 24 N -0.523 5.523 25 H 0.417 0.583 26 C -0.088 4.088 27 C 0.069 3.931 28 O -0.381 6.381 29 C 0.137 3.863 30 C 0.145 3.855 31 H 0.252 0.748 32 H 0.019 0.981 33 H 0.113 0.887 34 H 0.376 0.624 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.392 0.608 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.029 0.971 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.705 -20.339 -4.807 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.103 0.897 16 C 0.019 3.981 17 N -0.378 5.378 18 C 0.374 3.626 19 O -0.406 6.406 20 C -0.164 4.164 21 C -0.114 4.114 22 C -0.229 4.229 23 C -0.066 4.066 24 N -0.118 5.118 25 H 0.255 0.745 26 C -0.126 4.126 27 C -0.009 4.009 28 O -0.299 6.299 29 C 0.060 3.940 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.130 0.870 34 H 0.223 0.777 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.225 0.775 38 H 0.168 0.832 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.046 0.954 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 8.788 -20.700 -4.262 22.888 hybrid contribution -0.107 2.171 -0.701 2.284 sum 8.681 -18.528 -4.963 21.054 Atomic orbital electron populations 1.69754 1.04927 1.24736 1.57996 1.24773 0.95765 0.97764 1.02423 0.85976 0.78649 0.83464 0.77276 1.20538 1.21759 1.21651 1.19124 0.90529 0.82395 1.42690 0.90461 1.44348 1.01548 0.99732 1.86690 1.22597 0.85706 0.93020 0.98605 1.23197 0.95058 0.98066 0.81497 0.92723 1.86395 1.54357 1.76666 1.18834 1.22514 0.97526 0.94402 0.98177 0.89722 1.21278 0.89866 0.90143 0.96790 1.46028 1.42295 1.26724 1.22738 1.16988 0.80726 0.80045 0.84866 1.90852 1.58843 1.71047 1.19835 1.20578 1.04680 1.02314 0.88872 1.20813 0.96442 0.94389 0.99801 1.19922 1.05015 1.01153 0.96795 1.20240 0.96046 0.91504 0.98775 1.41643 1.30813 1.22932 1.16437 0.74539 1.21034 0.96199 1.01175 0.94208 1.22542 0.93373 0.86750 0.98203 1.88015 1.77736 1.33507 1.30633 1.21050 0.94348 0.94664 0.83940 1.21314 0.93335 0.85754 0.97701 0.93741 0.96317 0.86989 0.77735 0.89949 0.91443 0.77488 0.83151 0.89423 0.89228 0.92432 0.87994 0.91971 0.87908 0.95357 0.96598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.28 10.09 55.49 0.56 -25.72 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -14.92 3.39 -170.07 -0.58 -15.50 16 10 C 0.13 2.91 5.62 -2.53 -0.01 2.89 16 11 C 0.08 1.49 4.17 -24.59 -0.10 1.39 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 O -0.56 -10.19 12.33 -35.23 -0.43 -10.63 16 14 C -0.11 -1.77 2.89 -88.79 -0.26 -2.02 16 15 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.14 2.22 4.50 -4.04 -0.02 2.20 16 17 N -0.73 -9.68 5.47 -61.62 -0.34 -10.02 16 18 C 0.59 8.70 7.79 -12.85 -0.10 8.60 16 19 O -0.53 -9.77 16.88 5.19 0.09 -9.69 16 20 C -0.05 -0.64 7.07 -81.75 -0.58 -1.22 16 21 C -0.09 -1.06 10.63 -39.35 -0.42 -1.48 16 22 C -0.22 -2.31 6.02 -105.01 -0.63 -2.94 16 23 C 0.05 0.50 7.14 -81.83 -0.58 -0.08 16 24 N -0.52 -4.96 5.97 -5.43 -0.03 -4.99 16 25 H 0.42 2.87 8.19 -40.82 -0.33 2.54 16 26 C -0.09 -0.56 6.56 -27.41 -0.18 -0.74 16 27 C 0.07 0.43 6.78 37.44 0.25 0.69 16 28 O -0.38 -3.42 10.74 -35.23 -0.38 -3.80 16 29 C 0.14 1.15 7.25 36.07 0.26 1.42 16 30 C 0.15 2.93 6.75 -3.07 -0.02 2.91 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 34 H 0.38 5.60 9.12 45.56 0.42 6.02 16 35 H 0.08 1.52 7.52 -51.93 -0.39 1.13 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.39 4.19 7.60 -40.82 -0.31 3.88 16 38 H 0.15 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 374.37 15.07 5.64 5.64 Total: -1.00 -34.96 374.37 -9.07 -44.03 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.94 Total: 8.88 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.64 Total: 4.99 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.39 Total: -56.24 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.73 Total: -24.11 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.96 -9.07 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958130175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.332 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds