Wall clock time and date at job start Tue Mar 31 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99564 * 2 1 4 4 H 1.48502 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47240 * 299.99616 * 3 2 1 6 6 H 1.48505 * 109.47038 * 60.00100 * 3 2 1 7 7 C 1.38810 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00114 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.64533 * 0.05598 * 9 7 2 11 11 C 1.54912 * 104.83306 * 204.07767 * 10 9 7 12 12 H 1.08995 * 111.03828 * 204.90274 * 11 10 9 13 13 O 1.42903 * 110.99758 * 81.06681 * 11 10 9 14 14 C 1.55149 * 101.58182 * 322.99349 * 11 10 9 15 15 H 1.09002 * 110.72219 * 277.13706 * 14 11 10 16 16 C 1.53001 * 110.72077 * 153.85835 * 14 11 10 17 17 N 1.46504 * 109.47036 * 175.00109 * 16 14 11 18 18 C 1.34774 * 119.99981 * 180.02562 * 17 16 14 19 19 O 1.21699 * 120.00182 * 359.97438 * 18 17 16 20 20 C 1.46684 * 119.99960 * 180.02562 * 18 17 16 21 21 C 1.38158 * 126.18787 * 180.02562 * 20 18 17 22 22 C 1.38936 * 106.94737 * 179.97438 * 21 20 18 23 23 C 1.36271 * 108.02556 * 0.03573 * 22 21 20 24 24 N 1.34744 * 108.83303 * 359.69538 * 23 22 21 25 25 H 0.97000 * 125.71388 * 180.31679 * 24 23 22 26 26 C 1.51086 * 122.58583 * 179.88492 * 23 22 21 27 27 C 1.53547 * 107.71532 * 344.10611 * 26 23 22 28 28 O 1.42991 * 109.68743 * 48.02862 * 27 26 23 29 29 C 1.43419 * 114.33634 * 288.96417 * 28 27 26 30 30 C 1.47014 * 125.65028 * 179.97438 * 9 7 2 31 31 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 32 32 H 1.09009 * 110.36844 * 85.24387 * 10 9 7 33 33 H 1.09002 * 110.37005 * 322.91886 * 10 9 7 34 34 H 0.96700 * 114.00311 * 67.80834 * 13 11 10 35 35 H 1.08996 * 109.47758 * 294.99881 * 16 14 11 36 36 H 1.08998 * 109.46845 * 55.00181 * 16 14 11 37 37 H 0.97000 * 120.00243 * 0.02562 * 17 16 14 38 38 H 1.08007 * 126.52745 * 0.02562 * 21 20 18 39 39 H 1.09000 * 109.81260 * 224.55399 * 26 23 22 40 40 H 1.09000 * 109.86068 * 103.68753 * 26 23 22 41 41 H 1.09003 * 109.43404 * 287.95820 * 27 26 23 42 42 H 1.09007 * 109.43356 * 168.09508 * 27 26 23 43 43 H 1.08996 * 109.77123 * 291.11989 * 29 28 27 44 44 H 1.09008 * 109.80438 * 170.37004 * 29 28 27 45 45 H 1.08999 * 109.88292 * 59.56690 * 30 9 7 46 46 H 1.09001 * 109.88362 * 298.40882 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1413 -2.5332 0.0011 11 6 -0.4016 -3.9321 0.6135 12 1 -1.3588 -4.3331 0.2804 13 8 -0.3371 -3.8865 2.0404 14 6 0.7786 -4.7524 0.0294 15 1 0.5465 -5.0985 -0.9778 16 6 1.1231 -5.9308 0.9425 17 7 2.1570 -6.7532 0.3093 18 6 2.6198 -7.8536 0.9349 19 8 2.1791 -8.1638 2.0261 20 6 3.6554 -8.6767 0.3012 21 6 4.2185 -9.8247 0.8244 22 6 5.1495 -10.2776 -0.1021 23 6 5.1451 -9.4178 -1.1592 24 7 4.2389 -8.4479 -0.9273 25 1 4.0330 -7.7111 -1.5236 26 6 6.0427 -9.6008 -2.3607 27 6 7.1431 -10.5995 -1.9741 28 8 6.5573 -11.7414 -1.3435 29 6 6.0423 -11.4912 -0.0286 30 6 1.9320 -3.7274 0.0017 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5267 -2.4874 -1.0175 33 1 -0.5994 -1.7586 0.6161 34 1 -1.0545 -3.3844 2.4507 35 1 1.4916 -5.5553 1.8970 36 1 0.2307 -6.5340 1.1094 37 1 2.5086 -6.5058 -0.5602 38 1 3.9798 -10.2832 1.7727 39 1 6.4906 -8.6460 -2.6361 40 1 5.4653 -9.9931 -3.1979 41 1 7.8401 -10.1223 -1.2852 42 1 7.6781 -10.9145 -2.8701 43 1 6.8657 -11.3018 0.6600 44 1 5.4669 -12.3519 0.3127 45 1 2.5585 -3.8506 0.8851 46 1 2.5284 -3.8644 -0.9003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958130175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:51 Heat of formation + Delta-G solvation = -84.419435 kcal Electronic energy + Delta-G solvation = -28654.307711 eV Core-core repulsion = 24544.193275 eV Total energy + Delta-G solvation = -4110.114435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.72621 -40.69691 -39.73706 -38.81783 -36.36520 -36.19488 -34.06112 -33.42154 -32.64035 -31.45262 -30.06379 -29.39419 -27.50010 -26.43465 -25.15410 -24.40510 -22.96606 -22.17962 -21.46662 -21.01019 -20.03437 -19.54799 -19.11237 -18.11062 -17.33609 -17.01543 -16.84771 -16.79031 -16.63946 -16.18576 -15.85884 -15.66254 -15.41376 -15.26057 -14.83925 -14.63757 -14.55214 -14.43027 -14.04608 -13.97187 -13.70065 -13.46973 -13.20781 -13.10858 -13.00453 -12.69375 -12.38076 -12.33885 -12.08298 -11.90626 -11.85353 -11.77056 -11.72269 -11.22532 -10.84056 -10.76616 -10.68819 -10.28596 -9.90377 -9.03335 -8.88540 -7.81563 -5.23975 0.33493 1.44278 1.45436 1.50932 1.55085 1.88667 2.05913 2.26785 2.46371 2.96679 3.24912 3.32636 3.56523 3.65437 3.75697 3.86343 3.91440 3.95284 3.99621 4.04534 4.19525 4.34982 4.39109 4.54348 4.57488 4.60909 4.65429 4.76970 4.79186 4.82192 4.85843 4.94638 4.97015 5.00702 5.10248 5.22325 5.31260 5.37347 5.48302 5.65138 5.75157 5.76386 6.23129 6.26440 6.31739 6.47937 6.94244 7.04916 7.08767 7.75200 8.37674 9.20746 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.002338 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.494934 B =11974.411460 C =13160.987745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.127 3.873 11 C 0.092 3.908 12 H 0.090 0.910 13 O -0.570 6.570 14 C -0.091 4.091 15 H 0.116 0.884 16 C 0.157 3.843 17 N -0.716 5.716 18 C 0.588 3.412 19 O -0.574 6.574 20 C -0.077 4.077 21 C -0.098 4.098 22 C -0.239 4.239 23 C 0.065 3.935 24 N -0.512 5.512 25 H 0.429 0.571 26 C -0.086 4.086 27 C 0.061 3.939 28 O -0.397 6.397 29 C 0.137 3.863 30 C 0.143 3.857 31 H 0.247 0.753 32 H 0.003 0.997 33 H 0.079 0.921 34 H 0.389 0.611 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.012 0.988 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.025 -21.436 -6.637 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.032 3.968 12 H 0.108 0.892 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.134 0.866 16 C 0.033 3.967 17 N -0.367 5.367 18 C 0.377 3.623 19 O -0.454 6.454 20 C -0.189 4.189 21 C -0.125 4.125 22 C -0.245 4.245 23 C -0.056 4.056 24 N -0.108 5.108 25 H 0.269 0.731 26 C -0.123 4.123 27 C -0.015 4.015 28 O -0.315 6.315 29 C 0.060 3.940 30 C 0.017 3.983 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.097 0.903 34 H 0.238 0.762 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.164 0.836 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.144 0.856 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.030 0.970 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.119 -21.795 -6.128 24.799 hybrid contribution -0.443 2.474 -0.158 2.518 sum 9.676 -19.321 -6.286 22.504 Atomic orbital electron populations 1.69992 1.06009 1.24957 1.58779 1.25562 0.96691 1.00754 1.02773 0.85017 0.78037 0.79536 0.76777 1.19396 1.21687 1.21973 1.19438 0.90880 0.83870 1.42309 0.90574 1.44648 1.02618 1.00726 1.86646 1.22454 0.84713 0.95274 0.97428 1.23120 0.97289 0.95225 0.81185 0.89197 1.86383 1.55491 1.76828 1.19038 1.22457 0.95300 0.93371 0.99832 0.86597 1.20939 0.90411 0.89968 0.95333 1.45821 1.41684 1.26007 1.23151 1.17260 0.80682 0.80066 0.84312 1.90821 1.60537 1.72246 1.21836 1.20191 1.05509 1.02774 0.90474 1.20980 0.96877 0.94501 1.00116 1.20204 1.05196 1.02246 0.96819 1.20845 0.95140 0.90339 0.99289 1.41579 1.30309 1.23309 1.15568 0.73050 1.21206 0.95730 1.02474 0.92939 1.22798 0.93415 0.86208 0.99128 1.87998 1.77906 1.34905 1.30731 1.21109 0.94448 0.94131 0.84287 1.21444 0.94555 0.84756 0.97511 0.94280 0.97905 0.90264 0.76238 0.93026 0.90935 0.75722 0.83623 0.87080 0.88092 0.92032 0.85625 0.91008 0.87349 0.97035 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.86 10.09 21.65 0.22 -54.64 16 2 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 3 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.24 -13.08 10.27 84.03 0.86 -12.22 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -31.09 3.39 -691.99 -2.35 -33.44 16 10 C 0.13 5.87 5.62 86.86 0.49 6.36 16 11 C 0.09 3.21 4.17 31.98 0.13 3.35 16 12 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 13 O -0.57 -20.55 12.33 -148.98 -1.84 -22.38 16 14 C -0.09 -2.82 2.89 -9.61 -0.03 -2.84 16 15 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.16 4.74 4.50 86.38 0.39 5.13 16 17 N -0.72 -18.15 5.47 -467.07 -2.55 -20.70 16 18 C 0.59 17.28 7.79 86.45 0.67 17.95 16 19 O -0.57 -21.66 16.88 -4.35 -0.07 -21.73 16 20 C -0.08 -1.86 7.07 40.37 0.29 -1.58 16 21 C -0.10 -2.33 10.63 22.42 0.24 -2.09 16 22 C -0.24 -4.65 6.02 -20.11 -0.12 -4.77 16 23 C 0.06 1.06 7.14 41.78 0.30 1.36 16 24 N -0.51 -8.66 5.97 -171.10 -1.02 -9.68 16 25 H 0.43 4.77 8.19 -92.71 -0.76 4.01 16 26 C -0.09 -0.79 6.56 30.15 0.20 -0.59 16 27 C 0.06 0.59 6.78 72.17 0.49 1.08 16 28 O -0.40 -6.26 10.74 -148.98 -1.60 -7.86 16 29 C 0.14 2.12 7.25 71.28 0.52 2.63 16 30 C 0.14 5.62 6.75 86.73 0.59 6.21 16 31 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 32 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 33 H 0.08 4.22 5.87 -2.39 -0.01 4.20 16 34 H 0.39 11.46 9.12 -74.06 -0.68 10.78 16 35 H 0.05 1.91 7.52 -2.39 -0.02 1.89 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.41 7.78 7.60 -92.71 -0.70 7.08 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.55 8.09 -2.39 -0.02 0.53 16 42 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.01 0.50 7.68 -2.39 -0.02 0.48 16 46 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -77.37 374.37 -2.81 -80.19 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -1.10 Total: 26.27 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.47 Total: 16.79 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -5.71 Total: -118.47 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -3.51 Total: -51.97 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -77.37 -2.81 -80.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958130175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -77.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds