Wall clock time and date at job start Tue Mar 31 2020 18:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47058 * 239.99775 * 3 2 1 5 5 H 1.48501 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47099 * 119.99741 * 3 2 1 7 7 C 1.38811 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00374 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.47014 * 125.64955 * 0.04722 * 9 7 2 11 11 C 1.54331 * 107.26998 * 181.01886 * 10 9 7 12 12 H 1.09000 * 110.87198 * 263.75468 * 11 10 9 13 13 O 1.42903 * 110.71518 * 140.55636 * 11 10 9 14 14 C 1.55152 * 102.94141 * 22.19491 * 11 10 9 15 15 H 1.08995 * 111.00930 * 82.57281 * 14 11 10 16 16 C 1.53004 * 111.00413 * 206.42191 * 14 11 10 17 17 N 1.46492 * 109.47191 * 184.99910 * 16 14 11 18 18 C 1.34783 * 119.99766 * 180.02562 * 17 16 14 19 19 O 1.21580 * 120.00014 * 359.97438 * 18 17 16 20 20 C 1.47514 * 119.99843 * 179.97438 * 18 17 16 21 21 O 1.35189 * 127.15183 * 359.68511 * 20 18 17 22 22 N 1.21480 * 111.55003 * 179.80743 * 21 20 18 23 23 C 1.29072 * 111.68751 * 0.32242 * 22 21 20 24 24 C 1.35247 * 127.15523 * 179.97438 * 20 18 17 25 25 C 1.50108 * 131.33308 * 0.33736 * 24 20 18 26 26 C 1.53571 * 108.01486 * 163.70796 * 25 24 20 27 27 C 1.53004 * 109.80477 * 50.04676 * 26 25 24 28 28 C 1.50648 * 130.33988 * 180.15986 * 23 22 21 29 29 C 1.47430 * 125.64572 * 180.02562 * 9 7 2 30 30 H 0.97001 * 120.00199 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.88743 * 61.60231 * 10 9 7 32 32 H 1.08997 * 109.88268 * 300.43271 * 10 9 7 33 33 H 0.96700 * 114.00311 * 66.48015 * 13 11 10 34 34 H 1.09006 * 109.47079 * 305.00005 * 16 14 11 35 35 H 1.09007 * 109.46976 * 64.99473 * 16 14 11 36 36 H 0.96998 * 120.00560 * 0.02562 * 17 16 14 37 37 H 1.08997 * 109.75629 * 283.33731 * 25 24 20 38 38 H 1.08997 * 109.75636 * 44.07863 * 25 24 20 39 39 H 1.09004 * 109.41778 * 289.94447 * 26 25 24 40 40 H 1.09002 * 109.36418 * 170.11617 * 26 25 24 41 41 H 1.09001 * 109.38503 * 168.10017 * 27 26 25 42 42 H 1.09006 * 109.28662 * 48.37535 * 27 26 25 43 43 H 1.09003 * 109.74026 * 282.82563 * 28 23 22 44 44 H 1.09002 * 109.73656 * 43.53007 * 28 23 22 45 45 H 1.08997 * 110.36932 * 37.07042 * 29 9 7 46 46 H 1.09001 * 110.36275 * 274.74788 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 -0.0010 11 6 -0.4485 -4.0441 0.0254 12 1 -0.6332 -4.4202 -0.9808 13 8 -1.5632 -4.3161 0.8773 14 6 0.8516 -4.6562 0.6104 15 1 0.8563 -4.5967 1.6987 16 6 1.0368 -6.1009 0.1417 17 7 2.2056 -6.6836 0.8054 18 6 2.5641 -7.9563 0.5441 19 8 1.9172 -8.6209 -0.2421 20 6 3.7413 -8.5429 1.2121 21 8 4.5617 -7.9382 2.1002 22 7 5.4420 -8.6864 2.4756 23 6 5.3522 -9.8467 1.9172 24 6 4.2273 -9.7957 1.0592 25 6 3.7659 -10.9408 0.2053 26 6 4.9103 -11.9614 0.1206 27 6 5.4296 -12.2757 1.5250 28 6 6.2097 -11.0749 2.0772 29 6 1.9334 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5542 -2.0843 -0.9029 32 1 -0.5578 -2.0523 0.8826 33 1 -2.4008 -3.9547 0.5565 34 1 0.1491 -6.6812 0.3935 35 1 1.1868 -6.1162 -0.9379 36 1 2.7214 -6.1535 1.4330 37 1 2.8895 -11.4066 0.6560 38 1 3.5195 -10.5799 -0.7932 39 1 5.7200 -11.5487 -0.4812 40 1 4.5442 -12.8771 -0.3437 41 1 6.0863 -13.1446 1.4818 42 1 4.5861 -12.4920 2.1808 43 1 7.1384 -10.9507 1.5201 44 1 6.4313 -11.2343 3.1325 45 1 2.8326 -3.7406 0.6154 46 1 2.1668 -4.0418 -1.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958257751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:08 Heat of formation + Delta-G solvation = -9.378583 kcal Electronic energy + Delta-G solvation = -28802.031868 eV Core-core repulsion = 24695.171448 eV Total energy + Delta-G solvation = -4106.860420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.18761 -39.81538 -38.31389 -38.02368 -35.26079 -34.76451 -33.22715 -32.65693 -32.25846 -30.43711 -29.54393 -27.63728 -25.94989 -25.25628 -24.03749 -23.50916 -22.60332 -20.74188 -20.38133 -20.20033 -19.72694 -18.25070 -17.95407 -16.98901 -16.78837 -16.08546 -15.99986 -15.42517 -15.36435 -15.01949 -14.68670 -14.38521 -14.25433 -14.06069 -13.78705 -13.49456 -13.24517 -12.97617 -12.81324 -12.67723 -12.48215 -12.11308 -12.05110 -11.52309 -11.40491 -11.35803 -11.25142 -11.01484 -10.91248 -10.81529 -10.65118 -10.48070 -10.19477 -10.09052 -9.86166 -9.83570 -9.73909 -9.25864 -9.12721 -8.67373 -6.92421 -5.77359 -3.11950 0.63234 1.80685 2.43866 2.86040 3.10962 3.38116 3.42400 3.43470 3.57257 4.14662 4.36476 4.42229 4.42913 4.58707 4.66641 4.71353 4.85737 4.96108 5.02770 5.07716 5.13248 5.17239 5.36185 5.39633 5.41878 5.47505 5.53621 5.59988 5.63169 5.70529 5.79592 5.85406 5.88669 5.92870 5.99382 6.15161 6.21464 6.34453 6.50114 6.77952 7.23384 7.36568 7.47184 7.72591 7.80480 7.92839 8.15865 8.17748 9.14186 9.74655 10.38473 11.34219 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.002361 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.025697 B =11859.016748 C =12891.785008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.083 3.917 12 H 0.058 0.942 13 O -0.567 6.567 14 C -0.109 4.109 15 H 0.092 0.908 16 C 0.132 3.868 17 N -0.706 5.706 18 C 0.604 3.396 19 O -0.514 6.514 20 C -0.077 4.077 21 O 0.102 5.898 22 N -0.332 5.332 23 C 0.014 3.986 24 C -0.122 4.122 25 C -0.049 4.049 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.040 4.040 29 C 0.140 3.860 30 H 0.254 0.746 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.377 0.623 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.409 0.591 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -23.807 1.676 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.372 6.372 14 C -0.129 4.129 15 H 0.110 0.890 16 C 0.009 3.991 17 N -0.356 5.356 18 C 0.387 3.613 19 O -0.391 6.391 20 C -0.141 4.141 21 O 0.033 5.967 22 N -0.035 5.035 23 C -0.146 4.146 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.078 4.078 29 C 0.014 3.986 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.245 0.755 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.629 -23.772 2.326 25.074 hybrid contribution -0.068 1.222 -0.437 1.300 sum 7.561 -22.550 1.889 23.859 Atomic orbital electron populations 1.69924 1.04934 1.25306 1.56861 1.24817 0.95762 0.97793 1.02000 0.86165 0.78451 0.82984 0.77957 1.21109 1.21567 1.21080 1.19023 0.90454 0.82225 1.44204 0.90277 1.44297 1.01312 0.99939 1.87390 1.21826 0.85210 0.88443 1.01847 1.23120 0.85023 0.97946 0.91587 0.92459 1.86419 1.18877 1.80084 1.51783 1.22624 0.96341 0.92033 1.01885 0.88997 1.21521 0.86923 0.93345 0.97286 1.45966 1.31300 1.12393 1.45991 1.16464 0.81388 0.82125 0.81298 1.90850 1.52273 1.61063 1.34889 1.23487 0.97589 0.94186 0.98870 1.85279 1.29501 1.36035 1.45905 1.73452 1.08024 1.03151 1.18880 1.23419 0.98501 0.95486 0.97213 1.21103 0.95936 0.95495 1.00187 1.20118 0.98172 0.91198 0.99118 1.21686 0.98118 0.99161 0.96998 1.21632 1.00294 0.96879 0.96917 1.20134 0.96629 0.88147 1.02912 1.21640 0.94112 0.85783 0.97091 0.93609 0.93606 0.92372 0.77659 0.90577 0.90737 0.75518 0.89400 0.88836 0.91376 0.90554 0.90403 0.91218 0.89258 0.89432 0.93753 0.95845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.91 3.39 -170.09 -0.58 -15.49 16 10 C 0.15 3.55 5.15 -3.06 -0.02 3.53 16 11 C 0.08 1.50 3.80 -24.90 -0.09 1.40 16 12 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 13 O -0.57 -9.51 13.39 -35.23 -0.47 -9.98 16 14 C -0.11 -1.81 2.77 -88.48 -0.25 -2.06 16 15 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 16 C 0.13 1.86 5.13 -4.04 -0.02 1.84 16 17 N -0.71 -9.08 5.50 -61.35 -0.34 -9.42 16 18 C 0.60 8.17 7.82 -12.48 -0.10 8.08 16 19 O -0.51 -8.00 15.93 5.30 0.08 -7.91 16 20 C -0.08 -0.96 7.28 -36.87 -0.27 -1.23 16 21 O 0.10 1.31 11.10 13.82 0.15 1.47 16 22 N -0.33 -4.25 12.03 33.15 0.40 -3.85 16 23 C 0.01 0.16 7.21 -82.51 -0.60 -0.44 16 24 C -0.12 -1.37 6.02 -104.70 -0.63 -2.00 16 25 C -0.05 -0.43 5.59 -27.87 -0.16 -0.59 16 26 C -0.12 -0.76 5.87 -26.43 -0.16 -0.91 16 27 C -0.12 -0.66 5.84 -26.48 -0.15 -0.81 16 28 C -0.04 -0.28 6.32 -27.66 -0.17 -0.46 16 29 C 0.14 2.72 6.65 -2.54 -0.02 2.70 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 32 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 33 H 0.38 4.87 9.12 45.56 0.42 5.29 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.06 7.96 -51.92 -0.41 0.65 16 36 H 0.41 4.77 8.31 -40.82 -0.34 4.43 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.91 7.77 -51.93 -0.40 0.51 16 39 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.02 0.46 7.91 -51.93 -0.41 0.04 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -32.68 375.14 -8.53 -41.21 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.11 Total: 5.25 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.88 Total: 2.27 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.06 Total: -54.79 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.23 Total: -16.43 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.68 -8.53 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds