Wall clock time and date at job start Tue Mar 31 2020 18:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48497 * 109.47058 * 239.99775 * 3 2 1 5 5 H 1.48501 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47099 * 119.99741 * 3 2 1 7 7 C 1.38811 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00374 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.47014 * 125.64955 * 0.04722 * 9 7 2 11 11 C 1.54331 * 107.26998 * 181.01886 * 10 9 7 12 12 H 1.09000 * 110.87198 * 263.75468 * 11 10 9 13 13 O 1.42903 * 110.71518 * 140.55636 * 11 10 9 14 14 C 1.55152 * 102.94141 * 22.19491 * 11 10 9 15 15 H 1.08995 * 111.00930 * 82.57281 * 14 11 10 16 16 C 1.53004 * 111.00413 * 206.42191 * 14 11 10 17 17 N 1.46492 * 109.47191 * 184.99910 * 16 14 11 18 18 C 1.34783 * 119.99766 * 180.02562 * 17 16 14 19 19 O 1.21580 * 120.00014 * 359.97438 * 18 17 16 20 20 C 1.47514 * 119.99843 * 179.97438 * 18 17 16 21 21 O 1.35189 * 127.15183 * 359.68511 * 20 18 17 22 22 N 1.21480 * 111.55003 * 179.80743 * 21 20 18 23 23 C 1.29072 * 111.68751 * 0.32242 * 22 21 20 24 24 C 1.35247 * 127.15523 * 179.97438 * 20 18 17 25 25 C 1.50108 * 131.33308 * 0.33736 * 24 20 18 26 26 C 1.53571 * 108.01486 * 163.70796 * 25 24 20 27 27 C 1.53004 * 109.80477 * 50.04676 * 26 25 24 28 28 C 1.50648 * 130.33988 * 180.15986 * 23 22 21 29 29 C 1.47430 * 125.64572 * 180.02562 * 9 7 2 30 30 H 0.97001 * 120.00199 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.88743 * 61.60231 * 10 9 7 32 32 H 1.08997 * 109.88268 * 300.43271 * 10 9 7 33 33 H 0.96700 * 114.00311 * 66.48015 * 13 11 10 34 34 H 1.09006 * 109.47079 * 305.00005 * 16 14 11 35 35 H 1.09007 * 109.46976 * 64.99473 * 16 14 11 36 36 H 0.96998 * 120.00560 * 0.02562 * 17 16 14 37 37 H 1.08997 * 109.75629 * 283.33731 * 25 24 20 38 38 H 1.08997 * 109.75636 * 44.07863 * 25 24 20 39 39 H 1.09004 * 109.41778 * 289.94447 * 26 25 24 40 40 H 1.09002 * 109.36418 * 170.11617 * 26 25 24 41 41 H 1.09001 * 109.38503 * 168.10017 * 27 26 25 42 42 H 1.09006 * 109.28662 * 48.37535 * 27 26 25 43 43 H 1.09003 * 109.74026 * 282.82563 * 28 23 22 44 44 H 1.09002 * 109.73656 * 43.53007 * 28 23 22 45 45 H 1.08997 * 110.36932 * 37.07042 * 29 9 7 46 46 H 1.09001 * 110.36275 * 274.74788 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1376 -2.5327 -0.0010 11 6 -0.4485 -4.0441 0.0254 12 1 -0.6332 -4.4202 -0.9808 13 8 -1.5632 -4.3161 0.8773 14 6 0.8516 -4.6562 0.6104 15 1 0.8563 -4.5967 1.6987 16 6 1.0368 -6.1009 0.1417 17 7 2.2056 -6.6836 0.8054 18 6 2.5641 -7.9563 0.5441 19 8 1.9172 -8.6209 -0.2421 20 6 3.7413 -8.5429 1.2121 21 8 4.5617 -7.9382 2.1002 22 7 5.4420 -8.6864 2.4756 23 6 5.3522 -9.8467 1.9172 24 6 4.2273 -9.7957 1.0592 25 6 3.7659 -10.9408 0.2053 26 6 4.9103 -11.9614 0.1206 27 6 5.4296 -12.2757 1.5250 28 6 6.2097 -11.0749 2.0772 29 6 1.9334 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5542 -2.0843 -0.9029 32 1 -0.5578 -2.0523 0.8826 33 1 -2.4008 -3.9547 0.5565 34 1 0.1491 -6.6812 0.3935 35 1 1.1868 -6.1162 -0.9379 36 1 2.7214 -6.1535 1.4330 37 1 2.8895 -11.4066 0.6560 38 1 3.5195 -10.5799 -0.7932 39 1 5.7200 -11.5487 -0.4812 40 1 4.5442 -12.8771 -0.3437 41 1 6.0863 -13.1446 1.4818 42 1 4.5861 -12.4920 2.1808 43 1 7.1384 -10.9507 1.5201 44 1 6.4313 -11.2343 3.1325 45 1 2.8326 -3.7406 0.6154 46 1 2.1668 -4.0418 -1.0189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958257751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:07 Heat of formation + Delta-G solvation = -33.299555 kcal Electronic energy + Delta-G solvation = -28803.069159 eV Core-core repulsion = 24695.171448 eV Total energy + Delta-G solvation = -4107.897711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.07106 -40.96033 -39.77690 -38.71522 -36.64574 -36.21987 -34.23674 -33.86533 -33.39143 -31.66530 -30.71045 -29.31148 -27.41754 -26.24170 -25.38243 -24.26443 -23.73777 -22.22975 -21.70897 -21.17384 -20.71554 -19.30462 -18.86135 -18.79733 -18.22626 -17.30860 -16.99073 -16.80512 -16.43786 -16.04873 -15.86062 -15.70438 -15.33648 -14.93249 -14.90605 -14.67798 -14.41155 -14.29624 -13.99912 -13.70751 -13.65790 -13.39714 -13.21823 -13.10585 -12.84665 -12.69399 -12.44795 -12.34965 -11.97146 -11.90114 -11.87779 -11.80543 -11.63565 -11.49225 -11.30169 -10.99768 -10.81994 -10.72668 -10.65613 -10.20732 -8.93683 -7.86828 -5.23104 -0.32343 0.97053 1.45895 1.46053 1.48805 1.54895 1.82717 2.10160 2.47722 2.84415 3.22815 3.32431 3.37472 3.55688 3.63812 3.73970 3.81359 3.88533 3.95281 3.98187 4.15630 4.29795 4.37614 4.40859 4.41845 4.45100 4.53273 4.60596 4.73532 4.85016 4.87209 4.90152 4.93363 4.98170 5.10403 5.14111 5.16554 5.29452 5.32902 5.40363 5.41680 5.49391 5.71516 6.16297 6.18862 6.79722 6.90550 6.98029 7.07193 7.73878 8.36792 9.22972 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.002361 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.025697 B =11859.016748 C =12891.785008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.085 0.915 9 N -0.626 5.626 10 C 0.160 3.840 11 C 0.099 3.901 12 H 0.080 0.920 13 O -0.570 6.570 14 C -0.092 4.092 15 H 0.086 0.914 16 C 0.146 3.854 17 N -0.702 5.702 18 C 0.609 3.391 19 O -0.536 6.536 20 C -0.094 4.094 21 O 0.088 5.912 22 N -0.355 5.355 23 C 0.019 3.981 24 C -0.121 4.121 25 C -0.051 4.051 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.043 4.043 29 C 0.137 3.863 30 H 0.247 0.753 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.394 0.606 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.415 0.585 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.053 0.947 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 -26.275 1.624 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.103 0.897 9 N -0.353 5.353 10 C 0.034 3.966 11 C 0.038 3.962 12 H 0.098 0.902 13 O -0.377 6.377 14 C -0.111 4.111 15 H 0.105 0.895 16 C 0.023 3.977 17 N -0.352 5.352 18 C 0.393 3.607 19 O -0.414 6.414 20 C -0.158 4.158 21 O 0.022 5.978 22 N -0.061 5.061 23 C -0.142 4.142 24 C -0.126 4.126 25 C -0.089 4.089 26 C -0.156 4.156 27 C -0.153 4.153 28 C -0.081 4.081 29 C 0.012 3.988 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.243 0.757 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.033 -26.251 2.277 27.855 hybrid contribution -0.483 1.936 -0.411 2.038 sum 8.549 -24.315 1.866 25.842 Atomic orbital electron populations 1.70146 1.06248 1.25403 1.58167 1.25657 0.96661 1.01074 1.02542 0.85152 0.77148 0.78791 0.78245 1.20230 1.22117 1.20344 1.19436 0.91086 0.83561 1.43153 0.89711 1.44605 1.02177 1.01249 1.87239 1.21607 0.84559 0.91950 0.98439 1.22877 0.86085 0.94049 0.93167 0.90178 1.86389 1.19498 1.79852 1.51935 1.22419 0.94447 0.92983 1.01278 0.89541 1.21296 0.87596 0.91403 0.97424 1.45871 1.31012 1.12397 1.45951 1.16486 0.81382 0.81912 0.80893 1.90835 1.53110 1.61564 1.35894 1.23402 0.97821 0.94928 0.99680 1.85251 1.29831 1.36398 1.46361 1.73439 1.08533 1.04150 1.19969 1.24065 0.98388 0.95826 0.95899 1.21534 0.95641 0.95519 0.99904 1.20243 0.99505 0.91148 0.97970 1.21703 0.97055 0.99040 0.97770 1.21652 1.00558 0.96958 0.96097 1.20401 0.96736 0.86974 1.03996 1.21819 0.95115 0.83940 0.97924 0.94360 0.96780 0.96326 0.75682 0.90050 0.90315 0.74808 0.89055 0.89893 0.91330 0.88597 0.87736 0.91402 0.87905 0.88430 0.92889 0.94876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.64 10.31 21.65 0.22 -56.42 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 3 Si 0.98 45.53 29.55 68.60 2.03 47.55 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.24 -13.47 10.28 84.03 0.86 -12.60 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -31.36 3.39 -692.03 -2.35 -33.71 16 10 C 0.16 7.67 5.15 86.73 0.45 8.12 16 11 C 0.10 3.47 3.80 31.78 0.12 3.59 16 12 H 0.08 2.50 8.04 -2.39 -0.02 2.49 16 13 O -0.57 -18.46 13.39 -148.98 -1.99 -20.46 16 14 C -0.09 -2.94 2.77 -9.41 -0.03 -2.97 16 15 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 16 C 0.15 3.85 5.13 86.38 0.44 4.30 16 17 N -0.70 -17.25 5.50 -466.29 -2.56 -19.82 16 18 C 0.61 16.00 7.82 86.69 0.68 16.67 16 19 O -0.54 -16.17 15.93 -3.97 -0.06 -16.24 16 20 C -0.09 -2.32 7.28 24.03 0.17 -2.14 16 21 O 0.09 2.25 11.10 59.47 0.66 2.91 16 22 N -0.36 -8.87 12.03 -50.83 -0.61 -9.48 16 23 C 0.02 0.39 7.21 43.77 0.32 0.70 16 24 C -0.12 -2.58 6.02 -19.92 -0.12 -2.70 16 25 C -0.05 -0.83 5.59 29.85 0.17 -0.67 16 26 C -0.12 -1.14 5.87 30.79 0.18 -0.96 16 27 C -0.11 -0.90 5.84 30.75 0.18 -0.72 16 28 C -0.04 -0.50 6.32 29.99 0.19 -0.31 16 29 C 0.14 5.22 6.65 86.85 0.58 5.80 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.01 0.75 7.51 -2.39 -0.02 0.73 16 32 H 0.02 1.02 7.30 -2.39 -0.02 1.01 16 33 H 0.39 9.79 9.12 -74.06 -0.68 9.11 16 34 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.08 2.07 7.96 -2.38 -0.02 2.05 16 36 H 0.42 9.31 8.31 -92.71 -0.77 8.54 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.54 7.77 -2.39 -0.02 1.52 16 39 H 0.07 0.68 8.11 -2.38 -0.02 0.66 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.07 0.59 8.10 -2.38 -0.02 0.57 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.03 1.23 7.91 -2.39 -0.02 1.21 16 Total: -1.00 -71.99 375.14 -0.44 -72.43 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.42 Total: 20.41 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 4.66 Total: 12.82 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -5.30 Total: -119.43 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.40 Total: -33.78 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.99 -0.44 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958257751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.127 kcal (2) G-P(sol) polarization free energy of solvation -71.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds